Thamnophis sirtalis (common garter snake): 106539620
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Entry
106539620 CDS
T06107
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04510
Focal adhesion
tsr04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106539620 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106539620 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106539620 (COL2A1)
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106539620 (COL2A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COLFI
Collagen
WAP
Kunitz_BPTI
Motif
Other DBs
NCBI-GeneID:
106539620
NCBI-ProteinID:
XP_013909920
UniProt:
A0A6I9XZI7
LinkDB
All DBs
Position
Unknown
AA seq
584 aa
AA seq
DB search
MSKRCQRLFYGGCYGNANNFKELSECERQCVTPEHSGVCPRRVEIQPFVPCNNTCNIDRD
CPLTEKCCFTGCSRGCLPSDTPMLSLTFKGCARTDQCAKGYYSGTSLADKHKQTRVACCE
TDGCNSGPLPIPRHNDLKPNGLTCPGVYEENGSSIENGTVLCLGNEVQCYNAKLRMRACS
FSWVVVSYSILHVCGIKYLNFVSSPHSLSKQGERGETGAVGSHGAPGSPGAPGPVGPTGK
QGDRGETGPQGPIGPIGLAGTRGLPGAQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGP
PGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETGPSGPPGNPGPPGPPGPPGAGIDMSA
FAGLGQTEKGPDPMRYMRSDQAFSNLRPHDVEVDATLKTLNNQIESIRNPEGSKKNPART
CRDLKLCHPEWKSGESQAQCPCLIWDGPEFCQLSDFSYGDDSLAPNTANIQMTFLRLLSS
EGSQNLTYHCKNSIAYMDDTAGNLKKALLIQGSNDVEMRAEGNSRFTYTALQDGCTKHTG
KWGKTIIEYRSQKTSRLPIIDIAPMDIGGADQEFGVDIGPVCFL
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagagatgccaacgtctcttctacggaggctgctatgggaatgctaacaatttc
aaggagctgtctgaatgtgagcgccagtgtgtcaccccagaacactctggcgtgtgtccc
aggagggtcgaaatacagcccttcgttccctgcaacaacacctgcaatattgaccgtgac
tgtcccctgaccgagaagtgctgcttcaccggctgcagccgaggctgcctgccctcagac
actcctatgctgtccttgactttcaaaggctgtgcaagaactgaccaatgtgccaaaggt
tattatagcggcacatcactagccgacaaacacaagcagacaagagtagcatgttgtgag
actgacggctgtaattcgggacctcttcctataccacggcataacgacctgaaaccgaat
ggattgacttgtccgggcgtttatgaagaaaatggctcctctatagaaaatggaaccgtc
ttgtgtctcggcaatgaggtccaatgttacaatgcaaaactccgaatgcgtgcatgcagt
ttctcctgggtagttgtctcttactccatccttcatgtatgtggcattaaatatttgaac
tttgtttcttccccccactctctctccaaacagggtgaacgtggtgagactggtgctgtt
ggaagtcatggtgctcctggctcacctggtgctccaggtcctgttggtccaactggcaaa
caaggagacagaggggaaacaggtcctcaaggtcccattggccctattggcctcgcagga
acaaggggcttacctggtgcacaaggtcctcgtggcgacaagggtgaagctggagaggca
ggagaacgaggtctgaagggtcaccgaggattcactggcctgcagggtctccctgggccc
cctggtcccccaggccctgttggtccctctggcaaggatggctctaatggaatgcctgga
ccaattggtcctcccggccctcgtggtcgtagtggagaaactggtccatctggtcctcct
ggcaaccccggcccccctggccctcccggcccacctggagctgggattgatatgtcagcc
tttgctggcctcggccagactgagaaaggccccgatccaatgcgctacatgcgatccgat
caggcattcagtaatttgcggccgcatgacgttgaggtcgatgccaccttgaagactctc
aacaaccagattgaaagcatccgaaaccctgagggcagcaagaagaacccagctcgaacc
tgtcgtgacctgaaactatgccaccctgaatggaagagtggtgagtctcaggcgcaatgc
ccctgtctcatttgggatggacctgagttctgtcagctcagtgattttagctacggagat
gacagcctggctcctaacactgccaacatccagatgactttcctgcggctcttgtcttct
gaaggctcacagaatcttacctaccactgcaagaacagcattgcctacatggatgacaca
gccggcaatcttaagaaagctctcctgattcagggatccaacgacgtggagatgagagcc
gagggcaatagcaggtttacctacactgccttgcaggatggatgtactaaacataccggc
aagtgggggaagacaatcatcgagtaccgatctcagaagacttcgcgcctgcccatcatt
gacattgcgcctatggacattggtggcgccgatcaggaatttggtgttgacattggcccc
gtatgctttttgtaa
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