Thamnophis sirtalis (common garter snake): 106539856
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Entry
106539856 CDS
T06107
Symbol
SAMD4A
Name
(RefSeq) protein Smaug homolog 1
KO
K27396
protein Smaug
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106539856 (SAMD4A)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106539856 (SAMD4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SAM_1
SAM_2
PHAT
Motif
Other DBs
NCBI-GeneID:
106539856
NCBI-ProteinID:
XP_013910238
UniProt:
A0A6I9XGT1
LinkDB
All DBs
Position
Unknown
AA seq
612 aa
AA seq
DB search
MMFRDQVGVLAGWFKGWNECEQTVALLSLLKRVTRSQARFLQLCLEHSLADCTELHVLEN
EANSPGIINQWQQESKDKVISLLLTHLPLLKPGNIEGKVEYMKLLPKILAHSIEHNQHIE
ESRQLLSYALIHPATSLEDRSALAMWLNHLEDRTSGTFGSQNRGRSDSVDYGQSHYYHQR
QNSDDKLNGWQSSRDSGICVNASSWQDKNLGCENGHLPLYSSSSVPATINTIGTGTGTIL
SSQTHHSPLKRSVSLTPPMTVPSQPLGHGWMSHEDLRDRGPQGIPSDHAPLSPQSSVASS
GSGGSEHLEDQTSTRNTFQEEGSGMKDVPAWLKSLRLHKYAALFSQMTYDEMMSLTECHL
EAQNVTKGARHKIVISIQKLKERQNLLKSLERVTSLVCTQLLVSRPDEENISSYLQLIDK
CLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKSILDLSGYRQQRTRGFGQSNSLPTAGSA
GAGMGRRNPRQFQIPSRNLPTTRLGLLGPSGLLGASQRNGAANPTILKQGRQNLWFANPG
GSNSMPSRSHSSVQRTRSLPVHTSPQTMLMFQQPEFQVPVTEPDINNRLESLCLSMTEHA
LGDGVDRIWGRC
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttcgagaccaggttggagtattggcaggttggttcaaaggctggaatgaatgt
gaacagacagttgctttgctttccttactgaagagagtgactcggagccaggcccgtttc
cttcagctctgccttgagcattccctggccgactgcacagaactgcacgttctggaaaac
gaagccaacagccctggaatcattaaccagtggcagcaagaatcaaaggacaaagtgatt
tctctattgctcacccacctgcctttgctgaagccagggaatattgaaggaaaagtggag
tacatgaagctccttcccaaaatcctggctcactcaattgaacacaaccaacacatagag
gagagcaggcaactcctgtcctatgctttgatccatcctgccacatccctggaggacagg
agtgctcttgccatgtggttgaaccacttggaggaccgcacgtcgggtacctttggcagc
caaaacagaggccggtctgactcggtggattatgggcagtctcattactatcaccaaaga
cagaactcggatgataaactcaacgggtggcagagctctcgggattctggcatatgtgtg
aatgcctccagctggcaagataaaaacttggggtgtgagaatggccacctccccctctat
tcctcgtcctcggttcctgcaaccatcaacacgattgggactggtacaggcacaattctc
tcaagtcagacccaccacagccctctgaaacggtctgtgtccctcaccccacccatgact
gtgcctagccagccccttggacacggatggatgtctcatgaggacttgcgggatagggga
ccccagggcatcccttccgatcatgcccccctgtctccgcaaagcagtgtagcgtcttca
ggcagtggtgggagtgaacatttagaagatcagacttctactcgtaacacattccaggaa
gaagggagtggtatgaaagatgttcctgcctggctcaaaagcctgcgtctccacaagtat
gctgcccttttttcccagatgacctacgatgaaatgatgtccttgactgaatgtcatctt
gaggctcaaaatgttaccaaaggtgcaaggcataagattgtgatcagtatccaaaagcta
aaagagaggcagaatctcctcaaatccttggaaagagtcacctcactggtttgtacccag
ctccttgtctccagacctgatgaggagaatataagctcctatttacagctcatagacaaa
tgcctaattcatgaggcatttaccgagacacagaagaaaagactgttgtcatggaaacag
caggtgcaaaaactattcaggtctttccctcgcaaatccatcttagacctctcgggatac
cggcagcaaagaacccgaggttttggccagtcaaactccttaccgacagctggatctgca
ggtgcaggaatgggcagaagaaacccacgccaattccaaattccctctcgaaatctcccc
actacacggctggggcttttgggtcccagtggcctcctaggtgccagccagcgcaatgga
gctgccaaccccaccatcttaaagcaaggaagacagaatctttggtttgcaaatccagga
ggaagtaacagtatgcccagccgaagccatagttctgtacagaggacccgttcactgccc
gtccacacctctcctcagaccatgcttatgtttcagcaacctgagttccaggtcccagtg
acagaacctgatatcaataataggctggagtccttgtgcctgagtatgactgaacatgcc
ctaggagatggtgttgacagaatctgggggcggtgttaa
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