Thamnophis sirtalis (common garter snake): 106540041
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Entry
106540041 CDS
T06107
Symbol
SMG1
Name
(RefSeq) serine/threonine-protein kinase SMG1
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106540041 (SMG1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tsr01001
]
106540041 (SMG1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106540041 (SMG1)
Enzymes [BR:
tsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
106540041 (SMG1)
Protein kinases [BR:
tsr01001
]
Serine/threonine kinases: Other
PIKK family [OT]
106540041 (SMG1)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
106540041 (SMG1)
mRNA cycle factors
Common to processing body (P body) and stress granule
106540041 (SMG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PI3_PI4_kinase
SMG1
FATC
HEAT_ATR
HEAT
Motif
Other DBs
NCBI-GeneID:
106540041
NCBI-ProteinID:
XP_013910494
UniProt:
A0A6I9X527
LinkDB
All DBs
Position
Unknown
AA seq
2488 aa
AA seq
DB search
MVLTKPGDSSPEVINYLGNKACECYVSIADWSAVQEWQNAVHDLKKNSSGGSVNLKADFN
YIKSLSSFGAGELAECTEQLELLPGEDINLLIGGAKEKIDMKKLLPNVLSPDPRELQKAI
EVQLLRSSVCLATAVGYLDQDQKWQPMTENLTKYLKQTSRIALGPLRLSTLTISQSLPVL
STLQLYCSSALENTVSSRLSSEDCLIPLFSEALRSCKQHDVRPWMHALRYTMFQNQLLEK
LKGQSVPVKSHLMELGLTAAKFARKRGNVALATRLLAQCSEIQLGKTTTAQDLVHHFKKQ
PAPIQMDEKWGPELEIEKTKLLYTAGQSTHAMEMLSSCAICFCKSAKAESAVAKSILTLA
KWIQAEWKEISGQLKQVYRARQQQNLTGLSMLSRNIYTLIDLPSVNSMEEEYPRIESEST
VNIGVGEPDFILGQLYRLSSAQAPEVAKSWAALASWAYRWGRKVVDNASQGGVRLLPRET
SEVQNLLPENITEDDREKIYNILGQAVCRPAGIQDEDITLQIAENEDNEEDDMVDVIWRQ
LLSSCPWLLDLEENSTEGLIKVWRKVVDRIFSLYKLSCSAYFTFLKLNAGQVPLDEDDPR
LHLRNISEQSTDDVIVMATLRLLRLLVKHAGELRQYLEHGLETTPTAPWRGIIPQLFSRL
NHPEVYVRQSICNLLCRVAQDSPHLILYPAIVGTISLSSESQASGSKFPSAIPTFLGNIQ
GEELLGSECDGASPPASQESLKEEAKLGLNEDQAMMQDCYSKIVEKLSAANPTMVLQVQM
LVAELRRVTVLWDELWLGVLLQQHMYVLRRIQQLEDEVKRVQNNNTLRKEEKIAIMREKH
TALMKPIVFALEHVQSITAAPTETPHEKWFQDNYGDAIENALEKLKNPSNPAKPGSSWIP
FKEVMLNLQQRAQKRASYILRLEEISPWLAAMTNTEIALPGEVSARDTVTIHSVGSTITI
LPTKTKPKKLLFLGSDGKNYPYLFKGLEDLHLDERIMQFLSIVNTMFATINRQETPRFHA
RHYSVTPLGTRSGLIQWVDGATPLFGLYKRWQQREAALQAQKDSYQAPQNPGIVPRPSEL
YYSKIGPALKAVGLSLDVSRRDWPLNVMKSVLEELMEATPPSLLAKELWSSCATPDEWWR
VTQSYARSTAVMSMVGYIIGLGDRHLDNVLIDMTTGEVVHIDYNVCFEKGKSLRVPEKVP
FRMTQNIETAFGVTKVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWTAGGEAG
FAGAVYGGGGQQAENKQSKREMERDITRSLFSSRVAEIKVNWFKNRDEMLTVIPKLDSSL
GEYLHLQEQLTDIEKLQGKLLEESDYLESAEGVEHPSHTLQHRYSEHTQLQSQQRAVQEA
VQVKLNEFEQWISHYQAAFSNLEATQLASLLQEISTQMDLGPPSYVPATAFLQNAGQAHL
ISQCEQLEGEVGAFLQQRRSVLRGCLEQLHNYATVALQYPKTVFQKHRVEQWKVWMEDLI
VNMTIDHCQDLYRKYEIQYAPQPPPAVCQFISTTEITLQRYAADINSRLIRQVERLKQEA
VTVPVCEEQLKEIERCIKVFLHENGEEGSLSLASVIISALCSLTRRNLMMEGAASSAGEQ
LVDLTSRDGAWFLEELCSMSGNVTCLVQLLKQCHLTPQDLDIPNPVEASEAIHLANGVYI
SLQELNSNFRQIIFPEALRCLMKGEYTLESMLNELDTLIEQITDVPLQNLVESLQSYLRN
AAMGLEEETHSHYIDVARMLHAQYGELIQPRNGSVDETPKMSAGQMLLVAFDGMFAQVET
AFGLLVEKLNKMEIPAAWRKIDIIREARSTQTNFFDDENNRQVLEEIFFLKRLQTIKEFF
KLCGTFSKTLSGINSMEDQTTVNGPVPIVNVKTLYRNSCFSEDQMAKPIKAFTADFVRQL
LIGLPNQALGLTLCSFISALGVDIIAQVEAKDFGAESKVSVDDLCKKAVEHNIQIGKYSQ
LVMNRATVLASSYDTAWKKHDLVRRLETSISSCKTSLQRVQLHIAMFQWQHEDLLLNRPQ
AMTVTPPPRSAILASMKKKLHTLGQIEASIVAVQEKLAALEASIEQRLKWAGGANPALAP
VLQDFDATIAERRNLVLKESQRANQVTFLCSNIIHFESLRTRTAEALNLDAALFELIKRC
QQMCSFASQFNSTVSDLELRLLHRVGTNHDHPIGSSEWLVIAHKQLTQDTSAQRTAQAEK
EQHIDTVCETIQNLVDSIKTVLTGHNRQLGDVKHLLKAMAKDEEAALADGEDVPYENSVR
QFLGEYKLWQDNIQTVLFTLVQAMGQVRSQEHIEMLQEITPTLKELRTQSQSVYNNLVSF
ASPLITDTPNECSSPTSVAVCQPTFAAAVRSNTGQKTQPEIMSQNTRKLIQKNLAPSADT
PPGTIAGAGKSVISSPKKAIRDPKTGKAVQERNSYAVSVWKRVKAKLEGRDLDPNRRMSV
AEQVDYVIKEATNLDNLAQLYEGWTAWV
NT seq
7467 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgaccaagccaggggattcttcccccgaagtcatcaattacctggggaacaaa
gcttgcgagtgttacgtttccatcgctgactggtctgcggtgcaggaatggcagaatgcg
gtgcacgacttgaaaaaaaacagcagcggcggctcagtgaatttaaaagccgacttcaac
tacatcaagtccctgagcagctttggagccggagaacttgccgaatgtacagaacaactg
gagctgcttcctggggaggacatcaacctgcttattggaggggccaaagaaaaaatagat
atgaagaagctccttccaaacgtgttgtctcccgatcccagagaacttcagaaagccatt
gaggttcagctgttgaggagctccgtctgtttggccacagccgtaggctacctcgaccag
gaccagaaatggcagcccatgacagagaacttgaccaagtatttgaagcagacgtcccgc
attgctcttgggcctttgcgactgtccaccttgaccatttctcaatctttgcccgtcctc
agcactctccagctgtactgttcgtctgctttggaaaacacggtctccagccggctgtcc
tccgaggattgcctcattcccttgttcagcgaagccttgcgttcatgtaagcaacatgat
gtaaggccatggatgcacgctttaagatacaccatgttccaaaatcagttgctggagaag
ctgaaagggcagagtgttcctgtgaaaagccatttgatggaactggggctgacggctgca
aaatttgcgaggaaacgtgggaacgtggccctggcgacgcggctgcttgctcagtgtagc
gaaatccagctagggaaaaccaccacagcccaggatttagtccaccactttaagaagcag
ccggcaccgattcagatggacgaaaaatggggtcctgagcttgaaatagaaaagaccaaa
ttgttgtacacagctggccagtccactcacgccatggagatgctgagctcctgcgccatc
tgcttctgcaaatctgccaaagctgaaagtgctgtggccaagtccatcctgaccttagcc
aaatggatccaagccgagtggaaggaaatctcaggacagttgaaacaagtgtaccgagcc
cgacagcagcaaaatctcacgggcctctccatgctgtccagaaacatctacaccttgatt
gatctgccatccgttaactccatggaggaagaatatccgaggatcgaaagtgaatccaca
gtcaacattggtgttggagaacctgatttcattttggggcagctgtaccgtctctcttca
gcccaggctcccgaagtagcgaaatcatgggccgctctagctagctgggcctacagatgg
ggccgaaaggtggttgacaatgccagtcaaggaggtgtgcgcttgctgccaagagagaca
tcagaagttcaaaacctgcttccagaaaatattacagaagatgacagagagaaaatctac
aacattcttggacaggcagtctgccggcctgctgggattcaggatgaggatataaccctt
cagattgcagagaatgaagacaacgaggaagacgatatggtggatgtgatctggcgccag
ttgttgagcagttgtccctggctcttggacctggaagagaactcaaccgagggtctcatc
aaagtgtggaggaaagttgtagacaggatcttcagcctttataagctttcctgtagtgcc
tattttactttcctgaaacttaatgctggccaggttcctcttgatgaagacgatcccaga
ttgcacctcaggaatatttcagaacagagcactgatgatgtcatcgtaatggccaccttg
aggttgttaaggctgcttgtgaaacacgccggggaactgaggcagtatctcgagcatgga
ctggaaacgactcctacagctccatggcggggcataattcctcaactcttctcacgtcta
aatcacccagaagtgtatgttcgacagagcatttgcaacctcctctgccgagtagcacaa
gattctcctcacctcatcctgtaccctgcaattgttggcactatttctctgagcagcgaa
tctcaagcctcagggagcaaattcccctcagcaatccctaccttcttgggcaacattcaa
ggggaagaactgctgggcagtgagtgtgatggggccagccctccggcttctcaagagagc
ctcaaggaggaggccaaactgggcttaaatgaagaccaggcaatgatgcaagactgctac
agcaaaattgttgagaagctgtcagctgcaaatccaacaatggtgttacaggttcaaatg
cttgtagccgagctgcgccgagtcaccgttctctgggacgaactttggctgggtgtcctt
ttgcagcaacacatgtatgtcctcaggcggattcagcaactggaagatgaagtaaagaga
gtccagaataacaacaccttacgcaaagaggaaaaaatagccatcatgcgtgaaaagcac
actgccttaatgaaacccatcgtctttgctctggaacatgtacaaagcatcaccgccgca
cccaccgagacgccccacgagaagtggtttcaggataattacggggacgccattgaaaac
gccttggaaaagctgaagaacccttccaatcccgcaaagcccggaagcagctggatccct
ttcaaagaggtgatgctcaaccttcaacagagagcccagaagcgggccagctacattttg
cgcctcgaggagatcagcccctggctggctgccatgaccaacacggagatagccctcccc
ggagaagtgtctgccagagacacggtcaccatacacagcgtaggaagcaccatcaccatc
ctgccaaccaaaaccaaaccaaagaagctcctctttctgggctccgatgggaaaaactac
ccgtatcttttcaaaggcctggaagacttgcatctggacgaacggatcatgcagttcctg
tcaatcgtcaacaccatgtttgctaccatcaatcgccaagagacgccgcgtttccatgcc
aggcattactcggtgactcccctgggaaccaggtcgggcctgattcagtgggtggatgga
gccacgcctttgtttgggctctacaagaggtggcagcagcgggaggcggccttgcaagcc
cagaaggattcctaccaggccccacagaacccagggatcgtacccagacccagcgaactc
tactacagcaaaattggaccagccttgaaagcagttggacttagtctggatgtctcccgt
cgagactggcccctgaatgtcatgaagtccgttttggaagaattaatggaagccacaccc
ccgagtcttctagctaaagagctttggtcgtcatgtgccacacctgacgaatggtggaga
gtgacccagtcgtacgcacgctcgactgcggtgatgtcaatggttggctacatcattggt
ctcggggacaggcatttggataacgtgctgatcgacatgacgacaggagaagttgtgcac
atcgattacaacgtttgctttgagaaggggaagagcctgcgagtcccagagaaagtcccc
ttccggatgacccaaaacattgaaactgccttcggagtgacaaaagtggaaggggtcttc
aggctttcttgtgaacaggtcctgcacatcatgcgccgaggacgggaaaccctgctgacg
ttactcgaagcttttgtctatgacccgctcgtcgactggaccgcaggtggcgaagccggg
tttgccggagctgtgtacggcggcggggggcagcaagcagaaaacaaacagagcaaaaga
gaaatggagagggacattacccgcagcctcttctcctcgagagttgcagaaataaaggtc
aactggtttaaaaacagagatgaaatgctgactgtaattcctaaactggatagcagttta
ggggaatatttacatttgcaagagcagctgacagatattgaaaaattacaaggcaaacta
ttagaagagagtgattatctggaaagtgccgaaggagttgagcatccttctcacacactg
cagcacagatattctgagcatacacagctgcagtctcagcagagagccgtgcaggaagca
gtccaggtgaaactgaatgaatttgagcagtggatctcacactaccaagctgcttttagt
aatctggaagctactcaacttgcaagcctgcttcaggagatcagcactcagatggatctt
ggtcctccaagctatgtgcctgccaccgccttccttcagaacgcaggtcaggctcacttg
atcagccagtgtgaacaactagaaggagaggttggtgcttttctccagcagaggcgctcg
gttctacgtggctgcctggaacagctgcacaactacgccaccgttgcgctacagtatcct
aaaacagtgttccagaagcaccgtgtcgagcaatggaaggtctggatggaagacctcatt
gttaacatgaccatcgaccattgccaggatctctatcggaagtatgaaatacagtatgcc
cctcagcctcctccggcggtgtgtcagtttatcagtacgacggaaataacacttcaacgc
tacgcggcagatatcaacagcaggctgatccgacaggtagaacggctgaagcaggaagcc
gtcacggttccggtgtgtgaagagcagctcaaggaaattgagcgttgcatcaaagtcttc
ctccacgaaaacggagaagagggttccctgagcttagcgagcgtgatcatctctgctctc
tgcagcctcacccggcgtaatttaatgatggaaggcgctgcgtccagtgccggagaacag
cttgttgacctgacgtcccgcgacggagcctggttcttggaggaactctgtagcatgagt
ggcaacgtcacctgtcttgtccagctactcaaacagtgtcacctgacccctcaagattta
gacattcctaaccccgttgaagcgtcagaagctattcacctcgctaatggagtttacatc
tcccttcaggaactgaattcaaatttccgtcagatcatttttccggaagctcttaggtgc
ttaatgaaaggagaatataccttggaaagtatgctgaatgagcttgataccctcattgag
caaataaccgatgttcctttgcaaaacctggtggagtctctccagtcttacttaaggaac
gcagccatgggtcttgaggaagaaacacattctcactacattgacgttgcaaggatgctt
catgcccagtacggcgaactgattcaacccagaaatggttccgttgatgaaacccccaaa
atgtcagcaggccagatgttactggtagcatttgatggcatgttcgctcaagtggaaaca
gcatttggcttattggttgaaaagctaaacaagatggaaattcctgccgcctggcgcaag
attgatataatcagggaagcccgcagcactcaaacaaacttttttgatgacgagaacaac
cggcaagtcttagaagagattttctttttgaaaaggctacagacaataaaggagtttttc
aaactctgtggcactttttctaagactctttcaggtatcaattccatggaagatcaaacc
actgtgaatggaccggtgcccatcgtcaacgtgaagaccttgtatcggaattcttgcttt
agcgaagaccagatggccaagccaatcaaagctttcaccgctgacttcgtccgccagctt
ttaatcggcctgcccaatcaggctctgggactcaccctgtgcagcttcatcagcgctctg
ggggtggacatcatcgctcaagtcgaagccaaggacttcggagccgaaagcaaagtctcg
gtggacgatctgtgcaagaaagccgtggagcacaacatccagatcggcaagtactcccag
ctggtgatgaaccgagccaccgtactggccagttcgtatgacacggcgtggaagaagcac
gacctggtcaggaggctggagaccagcatctcttcatgcaagaccagtctccagagggtg
cagctgcacattgccatgttccagtggcaacatgaggatctccttctcaaccgcccacaa
gccatgacggtcactcctccgcctcgttctgccattttggctagcatgaaaaagaaactt
cacacactgggacagattgaagcttccattgtagcagttcaggaaaaactggccgccctt
gaagcaagcatcgagcagcgtttgaaatgggccgggggagccaatccagcattagcccca
gttctgcaggatttcgatgccaccattgccgaaagaagaaaccttgttctgaaagaaagt
caacgagccaaccaggttactttcctctgtagtaacatcatccatttcgaaagcttgcgt
accagaacagcagaagccttaaaccttgatgctgcgttgtttgaacttatcaaacgttgc
caacaaatgtgctcctttgcatcccagtttaatagcaccgtttctgatctggagcttcga
ttgcttcacagagtgggaaccaatcatgaccatcccattggtagctctgaatggcttgtc
atagctcacaagcagctgacccaggacacgtcggctcagaggacggcacaggctgagaaa
gaacagcatatagacaccgtgtgtgaaaccattcaaaatctggttgatagtattaaaact
gtgctcactgggcacaatcgacaacttggggatgtcaaacatctgctgaaagccatggct
aaggatgaagaagctgccctggctgatggcgaagatgttccttatgagaacagtgttaga
caattcttgggagagtataaattatggcaagacaatattcagactgttctgtttacgcta
gttcaggctatgggtcaggtgcgcagtcaggaacatattgaaatgctgcaagaaattaca
cccactctgaaagagctgagaactcagagccagagtgtctacaataatctagtgagtttt
gcatcgcccttaatcacggatacgccgaatgaatgctccagcccgacgtctgttgctgtg
tgccagccaacatttgccgcagcggtccgtagcaatacgggacagaaaactcagccagag
atcatgtcgcagaatacaaggaaactaattcagaaaaacttggcgccatcggcagatact
cctccaggcacaattgcaggagctggaaagagtgttatctctagccctaaaaaggccatc
agagaccctaaaacaggcaaagctgtgcaagagcggaattcgtatgctgtaagtgtgtgg
aaacgtgtcaaggccaagttggaaggccgggatttggatcccaacaggagaatgtctgtt
gctgaacaggttgactatgtgattaaggaagccactaatctagataacttggctcagctg
tatgaaggttggacagcctgggtatga
DBGET
integrated database retrieval system
