Thamnophis sirtalis (common garter snake): 106540042
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Entry
106540042 CDS
T06107
Name
(RefSeq) serine/threonine-protein kinase SMG1-like
KO
K08873
serine/threonine-protein kinase SMG1 [EC:
2.7.11.1
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106540042
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tsr01001
]
106540042
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106540042
Enzymes [BR:
tsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
106540042
Protein kinases [BR:
tsr01001
]
Serine/threonine kinases: Other
PIKK family [OT]
106540042
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
106540042
mRNA cycle factors
Common to processing body (P body) and stress granule
106540042
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMG1
SMG1_N
Motif
Other DBs
NCBI-GeneID:
106540042
NCBI-ProteinID:
XP_013910495
UniProt:
A0A6I9Y173
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MSRRAPGSRLSGASSSGGGGTSGTRQHYHPRSWNDWQPRSDNQSADQENLKYSSSRDRSS
SSSYGLQPSNSTVVSRHRHDDIRVSTDLQNEEKGGYSVNGGSGENTYGRKSLGQELRVNN
VTNSDFTSVQHGNRALVTKDMRKTQERSLSYSDESRLSNLLRRITREDDRDRRLTTVKQL
KEFIQQPENKLVLVKQLDNILTAIHDVLSESSKLLQELRQEGACCLGLLCASLSYEAEKI
FKWIFSKFSSSTKDEVKLLYLCASYKALETVGEKKAFSSVMQLVMTSLQSILENVDTPEL
LCKCVKCILLVSRCYPHIFSTNFRDTVDILVGWHIDHTQKPSLTQQVSGWLQSLEPFWVA
DLAFSTTLLGQFLEDMEAYAEDLGHVASGESVDEDIPPPSVSLPKLAALLRVFSTVVRSI
GERFSPIRGPPITEGYVTDVLYRVMRCVTAANQVFFSETVLTAANECVGVLLGSLDPSMN
IHCDMIITYGLDQLENCQICGTDYIISVLNLLMLIVEQINTKLPSSFIEKLFIPESKLLT
LRYHKEKEVVAAAHAVYQAVLSLKNIPVLETAYKLILGEMACALNSLLCSLQLPQACSEI
LHDAFKNHIFDVANAKFVVIFDLSALTTIGNAKNSLIGMWALSPTVFALLSKNLMVAHGD
IAVHFPAVQYAVLYTLYSHCTRHDHFISSSLSSSSPSLFDGAVISTVTTATKKHFSIIVN
LLGLLLKKDNLTHDTRKLLMTWALEVAVLMKKSETYAPLFSLPSFHKFCKGLLANTLLED
VNICLQACNSLHALSSSLPEDLLQRCVDVCRVQLVHSVARIRQAFGKLLKSIPLDVILSN
HHHAEIQEISLAIRGHMSKAPSNTFHPQDFSDIISFILYGSSHRTGKESWLERLFYSCQR
LDKHDQSSIPRNLLKTEAVLWQWAIWEAAQFTVLSKLRTPLGRAQDTFQTIEGIIRSLAA
HTLNPDQDVSQWTTADNDEGHSSNQLRLVLLLQYLENLEKLMYNAYEGCANALTSPPKVI
RTFFYTNRQTCQDWLTRIRLSIMRVGLLAGQPAVTVRHGFDLLTEMKTNNVSQGSELEVT
IMMVVEALCELHCPEAIQGIAVWSSAVVGKNLTWINSVAQQAEGR
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagagccccggggtctcggctgagcggcgcttcgtcctccggaggcggcggc
accagcggcaccaggcaacactatcacccgcggagctggaatgactggcaacccagaagt
gacaatcaatcagctgaccaagagaatttaaaatactcttcatccagagaccggagtagt
tcttcctcctatggattacaaccttcaaattcaacggtggtgtctcgacatagacatgat
gatatcagagtctccactgacctccagaatgaagaaaaaggtggctacagtgtcaatgga
ggatctggggaaaatacttatggtcggaagtcgttggggcaagagctgagagttaacaat
gtgaccaattctgattttaccagtgttcagcatgggaatcgtgctttagtcacaaaagac
atgaggaaaacacaggagcgatcattgtcttactctgatgagtctcgactgtcaaatctt
cttcggaggattactcgggaagatgacagagatcgaagactgactactgtaaagcaactg
aaagagtttattcagcaaccagagaacaaactggtacttgttaaacaactggataatatc
ttgactgccatacatgatgtgcttagtgaaagtagcaaattgcttcaagaattgagacag
gaaggggcttgctgtcttggccttctttgcgcttctttgagctacgaagctgagaagatc
tttaaatggatttttagcaaatttagttcctccactaaagatgaagttaaactgctttat
ttgtgtgcaagttacaaggcgttggagactgtgggagagaagaaagccttttcatccgta
atgcaactcgtcatgactagcctgcagtctatcctagagaatgtggatacccccgaattg
ctgtgtaaatgtgtcaagtgcatccttcttgtgtctcgttgttatcctcacattttcagc
accaattttagggacacagttgacatattagttgggtggcatattgatcacactcaaaaa
ccttctctgacccagcaagtctcaggatggttacagagtttggaaccattttgggtcgct
gacctggccttttctaccacactcctgggtcagtttctagaggatatggaagcttatgct
gaggacctcgggcacgtcgcttccggagagtccgttgacgaggatattcctcctccttct
gtttcgctgcccaaactggcagctctgcttcgcgtgttcagcacagtggtgaggagtatt
ggagagcggttcagtcccatccgagggccgccgattactgaaggatacgtaaccgatgtt
ttgtacagagtaatgaggtgtgtgacagctgccaaccaggtctttttctctgagacggta
ttgactgctgccaatgagtgtgtcggtgtgttgcttggcagcctggatcccagcatgaat
atacattgcgatatgatcatcacttatggattagatcaacttgaaaattgtcagatttgt
ggtactgattatattatctcggtgttgaacttattgatgctgattgttgaacaaataaat
acaaaacttccatcatcatttatagagaaattgtttataccagaatctaagcttcttacg
ctccgctaccacaaagaaaaagaggttgtcgctgccgcacacgctgtatatcaggcagtg
ctaagcttaaagaacattcccgttttggaaacagcctacaagttgattctgggcgaaatg
gcatgcgccttgaacagtctcctttgcagcctgcagcttccccaagcttgctcggaaatt
ctccacgatgctttcaagaaccacatttttgatgtggccaatgcaaagtttgtcgtcata
tttgatctcagtgcgctgactacaatcggaaatgccaaaaattcattgattgggatgtgg
gctctgtctccaacggtcttcgctttgctgagcaagaatttgatggttgcccacggcgac
atcgccgtccattttccagctgtccagtatgcagtgctgtacaccctgtattcacactgc
accaggcatgaccacttcatatctagcagtctcagctcctcatctccttctttgtttgat
ggggctgtcataagcactgtgaccacagctacaaagaaacatttctctatcattgtaaac
ctcctgggacttttacttaaaaaggataatctgacccatgataccaggaaattgctcatg
acttgggctttggaagtagctgttctgatgaagaaatcagagacctatgcgcccttgttc
tctctcccctccttccataagttttgcaaaggacttctggcaaacactctcttggaagat
gttaacatttgtctccaagcgtgcaacagccttcatgctttgtcatcctctctcccagaa
gacttactccagaggtgtgtcgatgtttgccgcgtccaactggtccacagtgttgctcgg
ataaggcaagcatttgggaagctcttaaagtctattcctttggatgtcatactaagcaat
caccaccatgcagaaatccaagaaatctccctagccattcgaggacacatgagtaaagct
ccaagcaacacatttcacccacaagacttttctgatatcatcagtttcatcctgtatgga
agttctcaccgaacagggaaagagagctggctagaaaggttattttatagctgccaaaga
ttggacaaacacgatcaatccagtattccacgcaatttattgaaaaccgaggctgtcctt
tggcagtgggctatttgggaagcagcccaatttactgtcctttcaaagttaagaacaccc
ctaggaagagctcaggacacgttccagactattgaaggtatcattagaagccttgcagct
cacaccttaaatccggatcaagacgtcagccagtggactacagctgataacgacgaaggt
cacagcagcaaccaactgcggctggtactgctccttcagtacttggagaacttggagaaa
ctgatgtataatgcgtatgaagggtgcgccaatgctcttacgtccccaccaaaggtaatc
aggaccttcttctacacaaaccgccaaacttgccaagattggttaacccgtattcgactt
tccatcatgcgcgttgggttattggctggacagcccgccgtcactgtccgtcatggcttt
gatttgctgacagaaatgaagactaataacgtatctcagggaagtgaattagaagtaacg
atcatgatggttgtcgaagccctctgtgaacttcactgccccgaagccattcaagggata
gctgtctggtcttcggctgtagttggcaaaaacctcacctggattaactctgtagctcag
caggctgaaggacggtga
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integrated database retrieval system
