Thamnophis sirtalis (common garter snake): 106540164
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Entry
106540164 CDS
T06107
Symbol
VPS8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106540164 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106540164 (VPS8)
Membrane trafficking [BR:
tsr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
106540164 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
Clathrin
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
WD40_CDC20-Fz
zf_RING_Vps8_fungal
zf-RING_11
zf-RING_2
Beta-prop_WDR5
zf-RING_UBOX
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
106540164
NCBI-ProteinID:
XP_013910675
UniProt:
A0A6I9Y1L0
LinkDB
All DBs
Position
Unknown
AA seq
1405 aa
AA seq
DB search
MEEAFKTGTQSLDPDQGCFSMMDESSQQEAPSPKLSITELSKELESKSELIDDKEFDIPQ
VDTPPTLESILNETDDEEEPFVLEDPSLLNIDNIDTHSYDTSSVASSDSGDKSHLKRKKK
LRDSFSIHGSVIRLSLLKGISTQIVSAAAKVDAGLPTAIAASSLIAVGTSHGLALIFGKD
PNQALRLCLGNTAVGAQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSIIDAH
PPGTAILHIKFTDDPTLAICNDSGGSVFELSFKRVMGVRTCESRCLFSGSKGEVCCIEPL
HAKAELRDHPITQYSLLAMASLTKILVIGLKPSLKVWMTFPYGRMEPSSVPLLAWYFVAA
QTSVNPVLAFCRGDVVHFLLVKRDESGAIHVTKQKQLHLHYDLINFTWINSHTIVLLDSV
EKLHVIDRHTQEELETVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISNCG
GQIFYLGTKSVHVLTLRTWRERIDHLLKQECLNEALALSWSFHEGKAKAVVGLSGDEQKR
KAVVADRMVEILIHCADRTMKKCPEQGKIQVMEQHFQTMVPVIVDYCLLLQRIDILFGQM
YDKMSENSVAKGVFLECLEPYILSDKLVGITAQIMKDLLLHFQDKNLMANMEACIVHMDI
TSLDIQQVVLMCWENHLYDAMIYVYNSGMNDYITPLEKLFKAIAHPLSAGKSLSDEQVIM
GNKLLVYISCCLAGRAYPLGNIPEDLVPLIKNQVFEFLIRLHSAEAPTDEEVYPYVRTLL
HFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLAQQ
LAKPNNTLFVNRMLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEENRLIQMAE
KAEFYQICEFMYEREHRYDRIIDCYLHDPLRKEEVFSYIHNILSIPGYSTEEKQSVWQKT
MKHIEELTSVSPFKTADLISIHFSDEIEQIIQILQDEHLLFQFLKSLLDPREGINQDLLQ
LSPSITEQFIDLLCRYDADQVLETLKFLDSYRLEETIQVTQKYQLHEASSYLLEKKDDIP
GAFLVMLKWLQSKLSTLTSGDKISAQLPLLKDIEDTLGKTIALCQRNSHKFNQQEREALW
FPLLEAMLAPQRSALLPRYSEYLKNLTMQVLNNMTTFIALPLILQRILQDPVYGRGKLGE
IQGLVLGMLDSFNYEQTLLETTTSLLNRDLHWSLRNLKASMTKGLNPKQDYCCICLQQYK
RRQQTGDQIVVFSCGHLYHSLCLLSKECGTETTGQMRWTCFKCSASHKGEKVTLTSLEMR
KRTPVSLAQTSSECVLDPQQAQAFDQLCRLYRGTSRLALLTELSRDHGGEKHGFVQVSRG
DSALNSVFQNETFQLHLNPPPLLED
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagctttcaaaactgggactcaaagccttgatccagatcaaggctgtttctct
atgatggatgaatccagtcaacaagaagccccttctcccaaattatctattactgaattg
agcaaagagttagaatcaaagagtgagctgattgacgacaaagaatttgatattcctcaa
gttgatactcctccaacattagaaagtattttaaatgaaactgatgatgaagaagagcca
tttgttcttgaggatccttctcttctgaacattgataacattgatactcattcatatgat
acttcttcagtagcaagctctgatagtggagataaatcacacctaaaaagaaagaagaaa
ctccgtgattctttctccatccatggctcagttatacgtctgtcacttttgaagggtatt
tctacccaaatagtatctgcagcagccaaagtggatgcaggtttacccactgcaattgca
gcatcgagtcttatagccgtaggaacatcccatggtctagctttgatatttggcaaagac
cctaaccaggctcttcgactttgcctgggcaatactgctgttggtgcacagtatggggct
atatctgctcttagcatcaacaatgactgttcgagacttctgtgtggctttgcaaaagga
cagattacaatgtgggatctggccagtggaaaactgttacgatcaataatagatgcacat
cctccaggaactgcaattttgcacattaagtttacagatgatccaactctcgcaatctgc
aatgacagtggtggctctgtatttgaactgtcattcaagagagtcatgggtgtgagaaca
tgtgaatctcgctgtctgttcagtggttcgaagggagaggtttgctgcattgagccttta
catgcaaaggctgagctgagagaccatcctatcacccaatattctctgctagctatggct
tccttaacaaagattcttgtgattggattgaagccatctttgaaagtgtggatgacattc
ccgtatggtcgtatggaaccatctagtgttccactgcttgcctggtattttgttgctgct
caaacttctgtgaatccagtgcttgctttctgtcgaggagatgtggtccatttccttctg
gtaaaaagagatgaatctggagcaatacatgttacaaagcagaagcagctacacttgcat
tatgatttaatcaattttacatggataaactcccatacgattgtgcttctagacagtgtg
gaaaaattacatgtgatagatcgtcatacacaggaggaacttgagaccgtagagatatca
gaagttcagctagtatacaatagcagccatttcaaatcgttggcaacaggaggcaatgtt
agccaagcactggcactggtgggtgagaaggcttgctaccagtcaatcagcaactgtggt
ggtcagattttttatttgggtacaaagtctgttcatgttttaacgctgaggacctggagg
gagaggatcgatcaccttctgaaacaagaatgtcttaatgaagcattggctttgtcatgg
tcctttcatgaagggaaagccaaagctgttgtgggcttatctggggatgaacaaaaacgg
aaggctgttgttgcagacagaatggttgaaatacttattcattgtgctgatcgaaccatg
aagaaatgtcccgagcagggtaaaatccaagttatggagcaacatttccagactatggtc
cctgtcattgttgactattgtcttctgcttcaacgaatagatatattatttggtcaaatg
tatgacaagatgagtgaaaattcggtagcaaagggagtgtttttagaatgtcttgagcca
tacattttaagtgataaattggttggaatcacagctcagattatgaaggatttgctactt
catttccaagataagaacttaatggcaaatatggaagcctgcattgtacatatggatatt
accagccttgatatacaacaggttgtcctaatgtgttgggaaaaccacctgtatgatgcc
atgatatatgtctataacagtggaatgaatgactacattactccactggagaaattgttc
aaagccattgctcatccacttagtgctggaaaatctctctcagatgagcaagtcattatg
ggcaacaaactgcttgtctacataagctgctgtttggcaggccgggcttatccattgggc
aatattcctgaagacttggtaccattgattaaaaaccaagtctttgaattcctcatccgt
ctacattcagctgaggcccctacagatgaagaagtgtatccctacgttcgtacactgtta
cactttgatacacgagagttccttaacgttcttgcattgacatttgaagattttaagaat
gacaagcaagctgtggaataccaacagagaattgtggacatattactcaaggttatggtg
gagaactctgattttaccccatcacaagttggatgcctttttactttccttgctcaacag
cttgctaagccaaacaacacattgtttgtgaataggatgctatttgaccaggtccttgaa
tttctctgcagtcctgatgatgactcacgacattcggaaagacagcaggttcttttagaa
ttgcttcaggctggaggtatagtgcagtttgaagaaaacagactcattcaaatggcagaa
aaagctgaattttaccaaatctgtgagtttatgtatgaacgggaacatcgctatgatagg
ataattgattgctacttgcatgatcccttgagaaaggaagaggttttctcgtatatccac
aatattctttccattcctgggtatagtacagaagaaaagcaatctgtgtggcagaaaact
atgaaacatattgaggagctgacatcagtgagtccttttaaaacagcagatcttatttct
attcatttcagtgacgagattgaacaaataattcagattctacaggatgaacatttgctt
ttccaatttttgaagagtctccttgatccaagggaaggtatcaatcaagatttgcttcag
ctttcgccctctattaccgaacagtttattgatttgctgtgtcggtatgatgctgaccag
gtcttagagactttgaagttcctggactcctataggctagaagagacaattcaggtcacc
caaaaatatcagctccatgaggcttcttcttacttgcttgaaaagaaagatgacattcct
ggtgccttcttagttatgcttaagtggttacaaagcaagctttcaacattgacttctgga
gataaaatttcagcacaacttcctttactaaaagatattgaagataccttaggaaaaacc
attgcactttgccagaggaattcacacaaatttaatcagcaggagcgagaagcactgtgg
tttccgctcctagaggcaatgttggcaccccaaagatctgcactactaccccgttactct
gaatatttgaagaacttgacaatgcaagtattgaacaatatgacaacattcattgctctg
ccattaattttgcagagaatcctacaggatccagtatatggaagaggaaaacttggagaa
attcagggtcttgtgctgggtatgctagacagctttaactatgagcagactcttttggag
acaacaacaagcttacttaaccgcgatctccactggtctttacgtaatttgaaagcatct
atgactaaagggctcaatcccaaacaagattattgttgtatttgtttacaacagtacaag
agaaggcaacagactggtgaccaaattgtagtcttcagttgcggccatttgtaccattcc
ctttgtctgctaagtaaagagtgtggcactgaaacaacaggacagatgaggtggacttgc
tttaaatgcagtgcaagtcataaaggagagaaagtaactttgacttccttggaaatgagg
aaaagaactccggtatcacttgctcagactagttcagagtgtgtgttggatcctcagcaa
gctcaagcttttgaccagctctgtcgtctatatcgtggaacatcaaggctagcacttttg
actgaattgtctcgagatcatggtggtgaaaaacatggttttgtccaagtatcccgaggg
gattctgccctgaatagtgtcttccaaaatgagacttttcagcttcatctcaatcctcct
cctcttctagaagactaa
DBGET
integrated database retrieval system
