Thamnophis sirtalis (common garter snake): 106540473
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Entry
106540473 CDS
T06107
Symbol
ACAN
Name
(RefSeq) aggrecan core protein
KO
K06792
aggrecan 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tsr00535
]
106540473 (ACAN)
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106540473 (ACAN)
04091 Lectins [BR:
tsr04091
]
106540473 (ACAN)
Proteoglycans [BR:
tsr00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
106540473 (ACAN)
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
106540473 (ACAN)
Lectins [BR:
tsr04091
]
C-Type lectins
Lecticans
106540473 (ACAN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
hEGF
EGF_TEN
I-set
Ig_3
EGF_3
Motif
Other DBs
NCBI-GeneID:
106540473
NCBI-ProteinID:
XP_013911054
UniProt:
A0A6I9X6G8
LinkDB
All DBs
Position
Unknown
AA seq
1745 aa
AA seq
DB search
MTTLLLAFVCLPVIAAATSVEILVDHSGTLSVSIPLSAPLRVSLGRTLTIPCYFIDTLGP
VTTAPNTPPVSPRIKWSKLSEGKEVSLLVAMDGQVRINSAYKESISLPNYPSIPTDATLE
IKTLRSNDTGIYRCEVIHGIEDSQDTVEVKVKGIVFHYRAISTRYTLNFEKAKQACIQNS
AVIATPEQLQAAYDDGFDQCDAGWLSDQTVRYPMHHPREGCYGDKDDFPGVRTYGVRDTD
ETYDVYCYAQEMEGKVFYATSPEKFTFSEAAEKCHSLGARLATTGELYLAWKDGMDVCSA
GWLADRSVRYPINKPSPICGGNLVGVRTVYLYVNQTGYPYPHSRYDAICYTDVGIHVIHD
NVTEGSLEGLGSGFTVQTFTQTDIELELPRNTTEEEARGSIATLEPIDFTTATLEVDEAI
TETPDLFPTGFTGETENRTEIGIWEDLENGTMSTLDTLFPTDIPETTSEEYSSWSTATTE
SESASPFTVEEQIVPGTAASPVDQVPQKPTSPTGVVFHYRPSTNRYSLTFVEAQQACLNN
HAVIATPEQLQAAYEEGYEQCDAGWLNDQTVRYPIVVPRSKCSGDKENSPGVRSYGMRPA
SEKFDVYCYIERLKGEVFFATQTAQFTFLEAQRYCESQNATMASTGQLYAAWKLGQDNCQ
ASWLADGSLRYPIVHPRPTCGGDKPGVRTIYLYSNQTGFPDPQSKHHVFCFRATPSLYGE
LEEDLITAQTVPGVEEVPSGEETFTTDSDNQTEWGTDIFPTDTSLLSVSPPAESQSTILP
TDAIPDETSSEAPITETSASGWTSGAPEITGTVEPSETPSGFGDFPSGVPEISGLPSGES
GLPSGDQSGLSSGVIEVSTLPSGEEEVISSGIQEPGLQEGKGIPEFSGSPSGFSGDHSGT
DPSGSPSGEYDYSGLTSAFPTVSLVNATLTEVVTTATEREMEGKGTIGVSGDGDVSGFPS
VDWDVSGTTSGLPSGADANGTTDLSGFSSGTDISGEPSSTPDIGELPSGLDFNGTSIGTP
DLSGDVELSGQPSGIDGSGEPSGVTFIDTKLFEVTTPSSKEEEGKGFVEISGLPSGEEDL
SGTTPGILDVSGQPSSGQVDFSGWASGVTEVSGLPSGLTDISGESSGIELVSGISSGTYD
YSGLTSGFPTVSLVDTTLVEVVTQPSVAQELGEGTSGILEISGLPSGQEETSGALYDVTT
SSGVSSEKVDFSGTSSGIPYFGREIDDLTDVSGASSTTASASGDVSGIPEIILITDSIET
VTRPTVQQQLIGQTESFHFHEPSVEASASGAEVSTYPESTISPPEYHEISSKASTFHETS
VETPLFNETRDETSVLSKSHLETSTHYEPGGETSSLSESYSETSGAPFISGLPSGTYDER
TQFNGDSSGPAPEAVLDTSEKVFLTDALLSTSSPGVELTQHSKLLTETQAETETSTYPTA
ELETIDAAAPVIPLPSPTATPLLPNVSSEMTDGIQLMTQATPKTCEEKLCGSGTCHEQEG
NITCLCPTGFMGDYCEIDIDECHSNPCLNGATCVDGIHTFTCLCLPSYGGSRCDIDLAEC
ETGWTKFQGNCYKHFEEKLTWMEAEKLCRKHQSHLSSIITPEEQEFVNSNAQNYQWVGLS
DRAVEDDFRWSDGHSLLNIILFTFVWQDQIKKPAPVACGDPPAVENARHFGKKKDRYEIN
AMVRYQCSQGYLQRHVPIIRCQSNGQWEEPRIACIDRTRNRMIHSNIQAARLNLSPHGET
LLTVA
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgaccactttactactagcgtttgtatgtttgcctgtcatcgctgcagccacctctgtg
gaaattttagtagatcacagtggcacactcagtgtgagcatacctttaagtgctcctctg
cgggtttccctgggaagaactttgaccattccctgctactttatcgacactttggggccg
gtcaccacagctcccaacaccccaccagtgtccccaaggatcaaatggagcaaactatca
gaaggcaaagaagttagccttctagtggccatggacgggcaggtccggatcaatagtgcc
tacaaggagtctatctctctacccaattatccttccataccaactgatgctactctggaa
atcaagacactccgatccaatgacactgggatctaccgctgtgaagtcattcatggtatc
gaggatagccaggacactgtggaggtgaaagttaaagggatcgtgttccattacagagcc
atctctactcgctacacgttgaactttgagaaggcaaagcaggcatgcatccagaacagc
gcagtgattgcaactcctgaacagctccaggctgcctatgatgatggctttgaccaatgc
gatgctggctggttgtctgatcaaactgtcagatacccaatgcaccaccctcgggaaggt
tgttatggtgacaaggatgactttcctggagtgagaacatatggtgttcgagatacagat
gagacctatgatgtctattgttatgcacaggaaatggaaggcaaagtcttctatgccacc
tcgcctgagaagttcaccttttcagaagcagcagagaaatgccatagtctcggggcacgt
ttggcaaccacaggagagttatatctggcctggaaggatgggatggacgtttgcagtgct
ggctggctggcagaccgcagtgtccggtatcccatcaacaaaccaagtcccatctgtggt
ggcaacctggtgggcgtacgtacggtgtatctttacgtcaatcagactgggtatccttac
cctcattcccgctacgatgccatttgctacactgatgttggcattcatgtcatccatgac
aatgttacagagggctctcttgaagggttgggcagtggcttcaccgtccagacatttact
cagacagatattgagctggagcttccacgcaacactaccgaagaagaagcccgaggaagc
attgcaaccttggaacccatcgactttactaccgccaccttagaggtggatgaagccatc
acagaaactccagatctctttccaacaggtttcacgggtgaaacggagaacaggactgag
attgggatctgggaggacttagaaaacggtactatgtcaaccctggatactctcttcccc
accgatatcccagaaacgacatcggaggaatatagttcatggtctactgccacaactgaa
tctgagtcagcctcaccatttacagtagaagagcaaatcgtgccagggacagcggcttct
cctgttgatcaagtccctcagaaacccacttctcccacaggtgttgtttttcattaccgg
ccatccaccaacagatattccctgacttttgttgaagctcagcaagcttgcctaaacaat
cacgctgttattgctactccagaacaactacaggctgcctatgaagaagggtatgagcag
tgtgatgctggctggctgaacgaccagacagtcaggtatcccattgtcgttccacgcagc
aaatgttcaggagacaaagagaactcccctggagtgaggtcgtatggtatgcgcccagca
tcagaaaagtttgatgtctactgttatattgaaagactgaaaggtgaggtcttctttgca
actcagacagcacaattcaccttcttggaagcccaaagatactgtgagagtcaaaatgcg
accatggcttccactggacaactctacgctgcctggaaactaggccaagataactgtcag
gcaagctggttggctgatggaagcctccgatatccgattgttcatccccgccctacctgt
ggtggagacaagcccggtgtgagaacgatttacttgtactccaatcagacaggattccct
gacccacaatcgaagcatcatgtcttttgcttcagagcaacaccatctttgtatggggaa
ctagaagaagacttaattaccgcccagacagtccctggtgtagaagaagttccttctggg
gaagaaacgtttaccactgattctgacaatcaaactgagtggggaacagatatatttcca
actgatacatcactgttatctgtgagtccaccagctgagagtcaatcaaccattctcccc
actgatgccatacctgatgaaacaagttcagaagctccaatcacagagacatctgcttct
ggttggacttctggagccccagagataaccggaacggtcgaacctagtgaaacgccttca
ggatttggagacttcccctctggagtccctgaaataagtgggctgccttctggagaaagt
gggctaccctcaggagaccaaagtggcctatcttctggggttattgaagtcagcacctta
ccttctggagaagaagaagtgattagttcaggaatccaagaacctgggctccaggaaggc
aaagggatcccagaatttagtgggtcgccttctggatttagtggagaccattctggtact
gatcccagtggctcaccctctggagagtatgattatagtggtctcacatctgcatttcct
actgtgtccctggtgaatgccactttgacggaagttgtgaccacagcaacagaaagggaa
atggaagggaaagggacaattggggttagtggagatggagatgtatcaggcttcccctct
gttgactgggatgttagtggcacaaccagtggattgccctctggagctgatgccaatggg
accactgacctcagtgggttttcttcgggaactgatatcagtggggaaccatccagcaca
cctgatatcggtgaattaccatcaggacttgacttcaatggaacatctattgggacacct
gatctaagtggcgatgtcgaattaagtggccagccttcaggtattgatgggagtggtgag
ccttcaggtgttaccttcattgatactaaattatttgaagtgacaactccttcatctaaa
gaagaagaagggaaaggatttgtagaaataagtggattaccttcaggagaggaagatcta
tcaggcactacaccaggaattttagatgtcagtggtcagccttcttctggacaagtggac
ttcagtgggtgggcttcaggagttactgaagtcagtggacttcctagtggactaacagac
attagtggagaaagctctggcattgaacttgtcagtggcatttcatctggaacatatgat
tatagtggtctcacatcagggtttcctacagtttcccttgtggatacaactttggtggaa
gtcgtaacacagccctctgttgcacaagaattaggagaagggacatccgggatattagaa
ataagtgggcttccttcaggacaggaggaaacatctggagcattgtatgatgtgacaaca
tctagtggagtatcatctgagaaagttgacttcagcgggacttcctctggcattccatat
tttggtagagaaattgatgatctcactgatgtaagtggagcatcttcaaccacagccagt
gctagtggtgatgtctctggaatcccagaaattatcttaataactgattccatagaaaca
gtgacaagaccaacagttcaacagcaactgattggacaaacagagtctttccattttcat
gaacccagtgtggaagcctccgcatctggggcagaagtttctacctatcctgaaagtacc
atatcacccccagaatatcatgaaatcagtagcaaggcatccacatttcatgaaactagt
gtagaaactcctttgtttaatgaaacaagggatgaaacatcagtcttatcaaaaagccac
ctagaaacttcaacccattatgaaccaggtggagaaacatcttcattatctgaaagctac
tcagaaacatctggggcaccattcatcagtggcttaccctctgggacttatgatgaaagg
actcagtttaatggagacagttcaggtccagcacctgaggcagtgttagacacatcagag
aaagtctttttgacagatgccctacttagtaccagcagtccaggtgttgaactaactcaa
cattcaaagcttctaacagagactcaggctgagacagagaccagtacatatccaactgca
gagttggaaacaatagatgctgctgctccagtgattccactaccatcaccaactgctact
cctctccttcctaacgtttcatcggagatgactgatgggatacagcttatgacacaagct
acccctaagacttgtgaggagaaactatgtggaagtgggacctgccatgaacaagaagga
aacatcacctgtttatgcccaactggatttatgggtgattactgtgagatagacattgat
gagtgccactccaacccctgtctgaatggagcgacctgtgtcgatggcatccacactttc
acatgcttatgccttcccagctacggagggagccgctgtgacattgatctggcagaatgt
gaaacaggctggactaaatttcaaggtaactgctacaagcattttgaagagaaactcact
tggatggaggcggagaaactatgccgaaaacatcaatcccacctgagcagtatcatcaca
cctgaagagcaagaatttgtgaacagcaatgcacagaactatcagtgggttgggctgagt
gaccgagctgtagaagatgacttccgctggtctgatggacattctctgctcaatattatc
ctatttactttcgtgtggcaagatcagattaaaaaaccagcaccagttgcctgtggagac
cctcccgcagttgagaatgccaggcactttggcaagaagaaagaccgctatgagatcaac
gctatggtgcgctaccagtgcagccagggttacctacagcgccatgtgcccatcatccga
tgccaatcaaatgggcagtgggaagagcctcggatagcctgcatagaccgtacccgcaat
cggatgattcattctaacattcaagctgctcgactcaacctctcgccacatggggaaacg
ctcttgacagtagcttga
DBGET
integrated database retrieval system
