KEGG   Thamnophis sirtalis (common garter snake): 106540509
Entry
106540509         CDS       T06107                                 
Name
(RefSeq) roquin-1-like
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
tsr  Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tsr03000]
    106540509
   04121 Ubiquitin system [BR:tsr04121]
    106540509
Transcription factors [BR:tsr03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    106540509
Ubiquitin system [BR:tsr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    106540509
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX Prok-RING_4 zf-RING_2 zf-C3HC4_4 zf-CCCH zf-C3HC4 zf-C3HC4_3 zf-C3HC4_2 FYVE zf_CCCH_4 PaaA_PaaC zf-CCCH_UNK Vesi_VP2 zf-RING_4 zf-CCCH_4 zf-RING_6 Baculo_IE-1
Other DBs
NCBI-GeneID: 106540509
NCBI-ProteinID: XP_013911110
UniProt: A0A6I9Y2P7
LinkDB
Position
Unknown
AA seq 912 aa
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IEHLPVNSALLQLVGAQMPEQQPINLRSGAEDTKHYEEARKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLTRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRRECPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPAAAIISDE
ATVDLPNRKPSTLPNGIVSPGSTVTQLISRGTDSSYDSVMKSGKMDHHSSSAPGSPPDLL
EPVSKSSHPGPPRGPTDLPPISVGKQLQIVPRGSQLYPAQQTDVFYPDPRGTAPPFEPPT
YQAGVYYPPAQSLQCMSRFVRPPSSIPEPGPPFVEQHYAPYLQDRIMNSQYSAQPQQYPP
MSQPVYPPHYDSRRVYPAAQPYQREDIIRGSPVPIEISPPAVSPYVPETRDRYQQVEGYY
PVGPHLNQIRPSYHREHYTRAPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFASSPTL
PHSLHTDEYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDIVAVGLVEMVN
VDSKGMRDQRLDLQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNPGPMQAMTVQ
GASAKPVSVSGI
NT seq 2738 nt   +upstreamnt  +downstreamnt
atgcctgtacaagctccacaatggacggattttctctcctgccctatttgcacacaaaca
ttcgacgaaacgatccggaaacccatcagtctaggttgtggccacacagtctgcaagatg
tgcctgaacaagctccatcggaaagcatgtcctttcgaccagaccactatcaatacagac
atagaacatcttcctgtgaattcagctttgctgcagcttgtgggtgctcaaatgccagaa
cagcaaccaataaatctacgcagtggtgctgaagatactaaacattatgaggaagccagg
aaatgtgtggaagagctagccttataccttaaaccgctcagcagtgcaagaggtgtagga
ttgaacagcacaactcagagtgtgcttagccgacccatgcaaaggaagcttgtgacatta
gtccattgccagctggtggaagaagaagggcggatccgagctatgcgcgcagcacgatct
ctgggtgaaagaactgttactgagcttattcttcagcaccagaacccccagcaattatct
tcaaatctttgggctgcagtgagggctagaggctgtcagttccttggaccagcgatgcag
gaggaagccctgaagttagttcttttagctttagaagatggatctgctttatctcgaaaa
gtcttggttctctttgtggtacagaggttggagccacgatttcctcaggcttctaaaacc
agcattgggcatgttgtccagcttctttacagagcctcctgtttcaaggtgactaaacgt
gatgaggattcctctctaatgcagctgaaggaagaattcagaacatatgaagctctgaga
cgagaacatgattcccaaattgtacaaattgccatggaggctggtttgcggatagctcca
gatcagtggtcttcattgctatatggagaccagtctcacaaatcccatatgcagtccatt
attgacaagttgcagaccccagcttcttttgcacagagtgttcaggaattaacaattgct
ctccagaggactggtgatccagctaatttgacccggcttcgaccccatcttgaacttctt
gcaaatattgatcccagtccagatgctccaccgccgacgtgggaacaacttgagaatgga
ttagttgctgtacggactgtggtacatggactggttgattacatccagaatcacagcaaa
aaaggagcagatcagcaacagccacctcagcacagcaagtacaagacgtatatgtgtcga
gatatgaaacagagaagagaatgcccccgtggggccagctgcacatttgcacactcacag
gaagaactagaaaaatttcgcaagatgaacaaacgtctagttcctcgaagacctttgagt
gcctccttgggtcaactaaatgaagtgggcctgccagcagcagctattatctcagatgaa
gcaacagtggacttacccaataggaaaccctctaccttgccaaatgggattgtttcacca
ggcagtacagtgacacaacttatctctcgtggaactgactccagttacgactcggtcatg
aaatctgggaagatggaccaccatagtagtagtgctcctggatcacctcctgatttgctg
gaacccgtttccaagagctcccacccagggcccccccgaggacctacagacttgcctcca
atttcagtaggcaagcagctccaaatagttccccgaggctcccagttgtacccagctcag
caaactgatgtgttctatccagatcctcgaggaacagctcccccatttgagcctccaacc
tatcaagcaggtgtatattatcctccagctcaatcactacagtgtatgtctcgattcgtc
cgacccccatcatctattcctgaaccaggtcctccttttgtagaacaacattatgcaccc
tatctccaagatcgcatcatgaactcacaatacagtgcacagccacagcaataccctccc
atgagtcaacctgtatatcctccccattatgacagcagacgtgtttatcctgctgctcag
ccataccaacgggaagatattatccgaggaagtcctgttccaattgaaatttctccacct
gctgtatcaccatacgtacctgaaacaagagacagataccaacaagtggagggctactat
ccagttggaccacatctgaatcagattagaccttcatatcatagagagcattacactcgt
gctccccctcagccacacccgagtttagatgaattgcatcgaaggcgaaaggaaattatg
gctcagctggaagaaaggaaggtcatctccccaccaccatttgcatcatccccaaccctg
cctcattctttacacactgatgagtacttggatgaagatctgaaggtagcaggcaaatac
aaaggaaatgattacagccagtactctccctggtcgtgtgacactattggctcctacatt
ggaaccaaagatgcaaaacccaaagacattgtggcagtgggtcttgtggagatggtgaat
gtggacagcaagggaatgcgagatcaacgtttggatttacaaaggagagccgcagagact
ggtgatgatgatcttattccctttggagataggcctacagtatcaaggtttggtgccatc
tcacgtacttccaaagcaatgtaccagaatccaggccccatgcaagccatgacagttcaa
ggggcttctgcaaaaccagtcagtgtttcaggtataaa

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