Thamnophis sirtalis (common garter snake): 106540550
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Entry
106540550 CDS
T06107
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
106540550 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106540550 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106540550 (SUPT5H)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
106540550 (SUPT5H)
RNA polymerase I system
106540550 (SUPT5H)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
106540550 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW
KOW4_SPT5
KOW2_Spt5
KOW7_SPT5
Spt5-NGN
KOW5_SPT5
KOW6_SPT5
KOWx_SPT5
KOW1_SPT5
GPKOW_C
Arabino_trans_N
DUF150_C
DUF3912
Motif
Other DBs
NCBI-GeneID:
106540550
NCBI-ProteinID:
XP_013911186
UniProt:
A0A6I9XA37
LinkDB
All DBs
Position
Unknown
AA seq
935 aa
AA seq
DB search
MKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKCKIGEERSTAIALMRKFI
AYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRMGYWNQQMVPIKEMT
DVLKVVKEMTNLKPKSWVRLKRGIYKSDIAQVDYVEPSQNQISLKMIPRIDFDRIKARMS
QKDWVAKCKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGNRYSRKGFLFKSFAMLAV
ITDGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGDNVEVCEGELINLQGKIL
SVDGNKITIMPRHEDLKDMLEFPAQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVI
LFSDLTMHELKVLPRDLQLCSETASGVDVGGQHELGELVLLDPQTVGVIVRLERETFQVL
SMNNQLVTVRHQAVNRKKDNRFAVSLDSEQNNIHVKDIVKVIEGSHSGREGEIRHLFRGF
AFLHCKKLVENGGMFVCKTKHLILAGGSKPRDVTNVTAGGFVPMSPRMNSPMHPSSGGPR
GGFGGGGMNRGRGRRDNDLIGQTVRISRGSYKGYIGMVKDATESTARVELHSTCQTISVD
REHLTIVDSKKPSGMPSGYGRTPMYGSQTPMYGSGSRTPMYGTQHEGNRTPHYGSQTPLH
DGSRTPAQSGAWDPNTPSRPEEEFDYGFNDEPTPSPQGYGGTPNPQTPGYPDPSSPQVNP
PYNPQTPGTPAMYNTEQFSPYAVPSPQGSYQPSPSPQSFHQVAPSPVGYQNTHSPASYHP
TPSPMAYQASPSPSPVGFSPMTPGAPSPGGYNPHTPGSGIEQSSSDWVTTDIEVKVHDTY
MDSLVVGKTGVIRSMNGGMCSVYVKKCEKVVSISSEHLEPTTPTKNDKVKVLLGEDREAT
GMLLSIDGEDGIVRMNPEEQLRILNLRFLGKLVEA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaatacgccaagtcttccgtgggcgagactgtgtacggcggctccgatgagctt
tctgatgacatcacacaacagcagctacttccgggagtcaaggaccccaatctttggacg
gtgaaatgtaagattggagaagagcgttccaccgccatcgccctgatgaggaagttcatc
gcctaccagttcacggacacacccttgcagatcaagtcagtggtggctcccgaacacgtg
aagggctacatctacgtggaggcctacaagcagacccacgtgaagcaggccatcgagggg
gtgggcaacctccggatgggctactggaaccagcagatggtgcccatcaaggagatgacc
gacgtgctgaaggtggtgaaggagatgaccaacctcaagcccaagtcttgggtgcggctc
aagaggggcatctacaaaagtgacatcgctcaggtagattacgtggagcccagccagaat
cagatctcgctcaagatgattccgcgcatcgatttcgatcgcatcaaagctcgcatgagc
cagaaagattgggtggccaaatgtaagaaattcaagcgtcccccacagcgactctttgat
gcagaaaaaatccgatctctgggtggtgacgtggcctccgacggggatttcctcatcttc
gaagggaatcgctacagccggaaaggcttcctcttcaagagcttcgccatgctggctgtg
atcaccgatggagtgaagcccactttgtccgagctggagaaatttgaggaccagcccgaa
gggatcgacttggaagtggtgaccgagagcaccgggaaggaacgggaacacaactttcag
ccgggagacaacgtggaggtgtgcgaaggggagttgatcaacctgcaggggaagatcctg
agcgtggacgggaacaagatcaccatcatgcccaggcacgaagacctcaaggatatgctg
gagttcccagctcaggagctgcgcaaatacttcaaaatgggggaccacgtgaaggtcatc
gccgggcgcttcgagggcgacacggggctgattgtccgcgtggaggagaactttgtcatc
cttttttctgacctgacgatgcacgagctcaaagttcttccgcgagaccttcagctctgc
tccgagaccgcctctggtgtggacgtggggggccagcacgagctgggggaactagtgttg
ctggacccccagacggtcggggtcattgtgcgtctcgaacgcgagaccttccaggtcctg
agcatgaacaaccagctggtgacggtgcggcaccaggcggtgaatcggaagaaggacaat
cgcttcgcggtctccctggactcggagcagaacaatatccacgtgaaggacatcgtgaag
gtcatcgaagggtctcattcgggccgcgagggggagattcggcacctcttccgcggcttc
gccttcctgcactgtaagaagctggtggagaacggagggatgtttgtgtgcaaaacgaag
catctgattctggccgggggctccaagccccgggatgtcaccaacgtcacggcgggcggc
ttcgtgcccatgagcccacggatgaacagcccgatgcaccccagctctggagggccacgg
ggcggctttggcgggggcggaatgaaccgaggccgtgggcgcagggataatgacctgatt
ggacagacggtgcggatttcccgagggtcttacaaaggctacatcggcatggtcaaggat
gccacggaatccaccgccagggtggagctgcactccacctgccagaccatctcggtggat
cgggaacatctgacgatcgtggattccaaaaagccatccggcatgccctctggctacggg
cgcacccccatgtacggctcccagacgcctatgtacggctccggttcccgtacgcccatg
tacgggacccagcacgaaggaaaccgtacgccgcactatggttcccaaacacccttacat
gatggcagccggacacccgcccagagcggcgcctgggatcccaacaccccttcgaggcca
gaggaagagtttgactacggattcaacgatgagcccacgccttctccccaaggctacggg
ggaacccccaacccccagaccccaggctacccagacccttcctccccgcaggttaaccct
ccatacaaccctcagacgcccggaaccccagccatgtacaacacggagcagttctctccg
tacgccgtcccgtctcctcagggctcctaccagccgagtcccagccctcaaagtttccac
caagtggcgcctagccctgtgggctaccagaacacccactcccctgccagctaccacccg
actccttcacccatggcttaccaggctagccccagccccagcccggtgggctttagccct
atgaccccgggggctccttccccagggggctacaaccctcacaccccaggctctgggatt
gagcagagctccagcgattgggtcaccactgatatcgaggtcaaagtgcacgacacgtac
atggacagccttgtggtggggaagaccggagtcatccgtagcatgaatggtgggatgtgt
tcggtctacgtcaagaaatgtgaaaaggtggtcagcatttcaagcgaacacctggaacct
accacccctaccaagaatgataaggtcaaagtcctcttgggagaagaccgcgaagcaacg
gggatgttgctgagcattgatggggaagacggcatcgtccgcatgaacccagaagagcag
cttcgaattctcaacttgcgcttcctgggcaaactcgtagaagcttag
DBGET
integrated database retrieval system
