Thamnophis sirtalis (common garter snake): 106540588
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Entry
106540588 CDS
T06107
Symbol
MYO5C
Name
(RefSeq) unconventional myosin-Vc
KO
K10357
myosin V
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
106540588 (MYO5C)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106540588 (MYO5C)
04131 Membrane trafficking [BR:
tsr04131
]
106540588 (MYO5C)
03029 Mitochondrial biogenesis [BR:
tsr03029
]
106540588 (MYO5C)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tsr04812
]
106540588 (MYO5C)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
106540588 (MYO5C)
mRNA cycle factors
P-body specific factors
106540588 (MYO5C)
Membrane trafficking [BR:
tsr04131
]
Others
Actin-binding proteins
Myosins
106540588 (MYO5C)
Mitochondrial biogenesis [BR:
tsr03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
106540588 (MYO5C)
Cytoskeleton proteins [BR:
tsr04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
106540588 (MYO5C)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
SHE3
Csm1_N
Sec2p
CENP-Q
DUF1079
Motif
Other DBs
NCBI-GeneID:
106540588
NCBI-ProteinID:
XP_013911238
UniProt:
A0A6I9XK22
LinkDB
All DBs
Position
Unknown
AA seq
1324 aa
AA seq
DB search
INKALQFSGKQHSFIGVLDIYGFETFDLNSFEQFCINYANEKLQQQFNLHVFKLEQEEYM
KENIPWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPQGTDENWLQKLYNNFMNKNPLF
EKPRMSNTSFIIQHFADKVEYKSEGFLEKNRDTVYEVLIDILRNSKFRLFANFFQDGPVP
LSPFHAAIKVKSAKTVIASPNKQFRATVGSKFRSSLYLLMETLNATTPHYVRCIKPNDQK
LAFEFDSKRVVQQLRACGVLETIRISSQSYPSRWTYIEFYSRYSILMSQSELSLTDKKHI
CKMVLQRLIQDPRQYQFGRTKIFFRAGQVAYLEKVRSDRLRQACIMVQKNIRGWLQRKKF
LRVRQAAIIIQQYFRGERTVRKAITARALKETWAAIVIQKYSRGYLVRRLCQLIRVAALT
IQAFTRGFLARKKYRKMLEEQKALILQKYARAWLARRRFQSIRRFVLNIQLSYRVQRLQK
KLEEQNKENHSLLEKLAILASSHSSDIDTIQKLQQDVEKLTGQRKISEENERKNRMGNEQ
RVSRLEKHNLGLQEEKKKLEKELQKKTEEMKVKLDNLTQQLFSDVQREEKQRIILEKSFQ
SQKQDYEKRIESLTAEIMLLKEENARLQNRIQEMQQAQDGLKTEIDELSKQIKTIPELRK
EIDFLQIQKLDAEKQLQFQKREMREKMSEITKQLLESYDFTDVRSRLSLEDLQHLNEDGE
LWFAYEGLKKATRVLEKHFQDQKENYEREIDELNAKINHLVQEITQLQKLFREENDTNEC
IRLQVARLTSENMMMPDLKMQISELEKQKLDLENRLQDELAKKNETTEDTKSWTPQNPDE
ERSQKQALPLRKETSMKGKTVPTFPEFQRDGDHLGKQSEKSNGTGSKIWQDVAYLTMENS
DLEEELDKKDRLIKKLQDQIRTLKKSIETGNEESPSSMVKEYLGMLQYRKEDEAKIAQNL
ILDLKPRGVVVNMIPGLPAHILFMCVRYADYLNDDSMLKSFMNMAINGIKQVIKEHAEDF
EMLSFWLSNTCHFLNCLKQYSGEEEFMKHNTPQQNKNNLIHFDLSEYRQVLSDLAIRIYH
QFIGVMETSIQPMIVPGMLEYESLQGISGLKPTGFRKRSSSVDDTDAYTMTSILQQLSYF
YTTMCQNGLDPELLKQAVRQLFFLIGAVTLNSLFLRKDMCSCRKGMQIRCNISYLEEWLK
EKNLHSSSSKETLEPLSQAAWLLQVKKITEEDAKEISEHCTTLSSLQIVKILNSYTPIDD
FEKRIAPSFVRKVQGMLNNRQNSTQLMLDTKYLFQVTFPFTPSLHPLEMIEIPSSFKLGF
LTRM
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
attaacaaggccttgcagttttcaggcaaacaacatagctttattggtgttttggacatt
tatggatttgaaacctttgatctgaatagctttgaacaattttgcatcaactatgccaat
gaaaaactgcagcaacaattcaacctgcatgtctttaaacttgaacaagaagaatacatg
aaggaaaatatcccctggacattaattgatttttatgacaatcaaccagtcattgatctg
attgaagctaaaatgggcattctagaacttttagatgaagagtgtttgctacctcaagga
actgatgaaaattggctccagaagctatataataattttatgaacaagaaccctctcttt
gaaaagccaaggatgtcaaatacttcttttattatccagcattttgctgacaaggtagaa
tataaaagtgaaggatttctagaaaaaaaccgggacactgtttacgaagtactgattgat
atcttgagaaacagtaagtttcggctgtttgccaacttcttccaggacgggccagtccct
ctttccccgtttcacgctgcaatcaaagttaagtctgcaaaaactgtgattgcgtctcct
aacaaacagttccgtgcaactgttggaagtaagtttcgcagttccttatatttattaatg
gagactcttaatgctaccacgccacattatgtccggtgtataaaacccaacgatcaaaag
ttagcatttgaattcgactccaaaagagtagtccagcaattacgagcatgtggggtgtta
gaaaccattcgtataagctctcagagctacccgtcaaggtggacttacattgagttttac
agccgttacagcattctcatgtctcaaagcgaactttctctaacagacaagaagcacatt
tgcaagatggttctgcagcggctaatccaggatccaaggcaatatcaatttggcaggaca
aagatttttttcagagcagggcaggttgcctatttggaaaaagtccggtcagatcgacta
aggcaagcatgcatcatggtccagaagaacatccgaggttggcttcaaaggaagaagttc
ctccgtgtcagacaagctgcaatcatcatacagcaatacttccgcggagagaggactgta
cgaaaagctataaccgccagggccctgaaggaaacctgggctgccatagtcatccagaaa
tacagccgaggatacttagtgcgtagactttgccaactcatccgtgtggctgctttgacg
atccaggccttcactcgaggatttctagcgaggaagaaatacaggaagatgcttgaagaa
cagaaagctttaatcctccagaagtacgcccgggcttggctggccagacgccggttccag
agcattcgccgtttcgtcctgaacatccagctttcgtacagggtccagcggctgcagaaa
aaactggaggaacagaataaggaaaatcatagcttgttggaaaagctggccatccttgct
tcaagtcactccagtgatatagacaccattcaaaaacttcaacaggatgttgaaaaatta
accgggcagagaaaaatatcggaagaaaatgaaaggaagaacaggatgggcaacgaacag
agagtctcaagacttgaaaagcataacttggggctacaggaagagaagaagaagctggag
aaggaacttcaaaagaaaaccgaggaaatgaaagttaaactggataatttgacgcagcaa
ttattctctgacgttcaaagggaggaaaaacaacgaataatactggagaaaagtttccag
agccaaaaacaagattatgaaaaaaggattgagtcactcactgcagaaataatgcttctc
aaagaggaaaatgctcggctgcaaaatcggattcaagaaatgcaacaagctcaggacggc
ttaaaaacagaaatagatgagctttcaaaacaaataaagacaatccctgaattgcgaaaa
gaaatagacttccttcagatccagaaactggatgcggagaagcagctacaattccagaag
cgtgaaatgagagagaagatgtccgagattacaaagcaactgttggaaagttatgatttt
accgatgtcaggagcaggttgtctcttgaagacttacaacacttgaatgaagacggcgaa
ctctggtttgcctatgaaggcttgaaaaaagccacacgagttttggaaaagcatttccag
gatcagaaggagaactacgaaagggagatagacgaactgaatgctaaaataaaccacctg
gttcaagaaatcacccagctgcagaagctcttcagggaggaaaacgataccaatgaatgc
atccgtctccaagttgccaggctgacctccgagaacatgatgatgcccgaccttaagatg
cagatctctgagcttgagaagcagaagctggatcttgagaatcgtcttcaagatgaactt
gccaagaaaaacgagacaacagaagacacaaaaagttggacacctcaaaacccagatgag
gaacgctcacaaaaacaagccttgccacttcgaaaggaaacgtccatgaaaggaaaaacg
gtacccacgtttccagagtttcagagggatggggaccatctggggaaacagtctgaaaaa
tcaaatgggactggaagcaaaatatggcaggacgtggcatatctcaccatggaaaactcg
gatctagaagaagagctggataagaaagaccggttgataaagaaacttcaggatcaaatc
agaactcttaaaaaatccattgagacaggtaatgaagaatctccatcttctatggtgaag
gaatacctggggatgttgcagtaccgaaaggaggatgaggcaaaaattgctcaaaatctg
atccttgatctgaaaccccgcggagtagtcgttaatatgattcccggcctgccagctcat
atcctcttcatgtgtgtaaggtatgcggattatttgaatgacgacagcatgctgaaatcg
tttatgaacatggccatcaatggcataaaacaagtcattaaggaacatgccgaagacttt
gagatgttatccttctggctttccaatacctgccattttcttaactgtctgaagcagtac
agtggggaagaggaattcatgaagcacaacacaccgcaacaaaataagaacaatctgatc
cactttgatctgtccgaatacaggcaggtcctgagtgatctggccattcgtatatatcat
cagtttattggtgtaatggagaccagtattcagccaatgatagtgccaggaatgctggag
tatgaaagccttcaggggatttcaggcttaaaaccaaccggatttcgcaagcgttcctcc
agcgtcgatgacacagatgcttacacgatgacctccatcttgcaacagctcagttatttt
tacacaaccatgtgtcagaatggcttagacccggagcttctgaagcaggccgtgaggcag
ctcttctttctgattggagcagttactctgaacagtctctttctccggaaagatatgtgc
tcttgcagaaaggggatgcaaataaggtgcaacatcagctacctggaagaatggctgaag
gagaagaacctgcacagcagctcctccaaggagacgttggagcctctttcgcaagccgcc
tggctgcttcaggtgaaaaagatcacagaggaagatgccaaagagatctcggagcactgc
acgactctctcatctctgcagatagtaaaaatcctcaattcctacactcctattgatgat
tttgagaaaaggatcgctccatcctttgtccgtaaagtacagggaatgctgaataataga
cagaattccactcaactgatgctcgataccaaatacctctttcaagtcacgtttcccttt
acaccttccctacatccgctggaaatgatagaaatccccagcagtttcaaacttggcttc
ctaaccagaatgtag
DBGET
integrated database retrieval system
