Thamnophis sirtalis (common garter snake): 106541523
Help
Entry
106541523 CDS
T06107
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106541523 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106541523 (MSH6)
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
106541523 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_III
MutS_I
MutS_V
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
106541523
NCBI-ProteinID:
XP_013912479
UniProt:
A0A6I9XA50
LinkDB
All DBs
Position
Unknown
AA seq
1161 aa
AA seq
DB search
MSRQSSLLTFFSKPAEKSQDGGSDSPARNTEVSASAPSSSRGRTPTLPADCDLNDYSPGD
LVWAKLEGYPWWPCLVYAHPTEGSLLRGRGRASRIHVQFFEDDPSRGWVSIRYIRPYKGS
SGRDTQRGGMFYSSRPEIKRAMELADAAMRKDKSERLGLAVCDKPSESEEEEEEEMEQMS
DEGDDFDTEVKSRNKRIARRKHSDGKAKKRKIFIDSGTENEGSDMEFQPDEVSSDENSIE
ICDNETSESETVPQKKNSVKVLTKHSPKQMQDKACKSTQEANLKNNLSDTPNREFYPDFM
QKLASYAAPESFDFRPSINGGGAGGGGGDGNPTVWEHEKIDWLQDGKRKDGHRRRQNDPD
YDPSTLFVPEDYLKNCTPGMRKWWELKSQNFDGVIFYKVGKFYELYHMDAVVGVNKLGLV
FMKGTWAHSGFPEMAFDRFANVLIQKGHKVVRVEQMETPEMMEARCKSLAHPTRFDRVVR
REICRIISKGTQTYNILDGDYSETHNKYLLCIKEKTDDSVGLHRTYGVCFVDTTVGKFYI
GQFPDDRHCSRFRTLLAHYTPVQILFERGNPSAETQKILKGLISFTIQESLTPGSQFWNA
SKTLKTLIEEDYFQNKENTNSGITLPPVIRSMTAENDSLGLTPAENSELALSALGSCVFY
LKKCIIDKELLSMANFEEYIPVDVDIVNRTRSSSVFEKTNQRMVLDGVTLANLEILQNAT
RSSIEGTLLEKIDTCCTPFGRRLLKQWLCAPLCNPCAINDRLDAVEDLLAEAAKMSDIRD
RLKKLPDLERLLSKIHSIGSSLKNNSHPDNKAILYEEARYSKKKIIDFLSVLEGFNIIID
IISMLEDTVGGFKSKILKQITTVKSKNPAGCFPDLKAELERWESAFDHTVARRTGVVNPR
TGFDSDYDEALANINEIEENLRQYLEKQRKILGVRAVMYWGAGRNRYQMEIAETAVPQDL
PDEYIMKSSRKGYKRYWTKDIEKMLNEIISAEERRDSAQKDCMKRLFYDFDKTRKDWQSA
VECIAVLDVLLCLARYSQGCDGPLCRPEILLPENTSTFLELKSSRHPCITKTFFGDDFIP
NDIVIGLEDEKTKSRATCVLVTGPNMGGKSTLMRQAGLLVVMAQLGCFVPAESCRLTPVD
RVFTRLGASDRIMSGGFHVFL
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccagagcagcctcctcacgtttttctcaaagcctgcggagaagagtcaggac
ggtggcagcgatagccccgcaagaaacaccgaggtttcggccagtgcccctagtagcagc
cggggcaggacgccaacgctgccggcggattgtgacttgaatgactattcacctggtgat
ttagtttgggccaaacttgaaggctacccgtggtggccatgccttgtgtatgcacaccca
acagaaggatcccttttaagggggagaggaagagcatcacgtatccatgtacaatttttt
gaagatgacccttcaagaggctgggttagcattagatatataagaccatataaaggttct
tcaggtagagacacccagaggggaggtatgttttacagttcaagacctgaaattaaaaga
gcaatggaactggcagatgctgctatgagaaaggataaaagtgaacgactaggtctagct
gtgtgtgacaaaccttcagaaagtgaagaagaggaggaagaagaaatggagcagatgagt
gatgaaggcgatgatttcgacacagaagtaaaaagtagaaataaaaggatagctagacga
aagcattctgatggaaaagccaaaaaaagaaagattttcatagattcaggcacagaaaat
gagggttcggatatggaatttcagccagatgaagttagcagtgatgaaaatagtattgaa
atatgtgacaatgaaacttctgaatctgaaactgtccctcaaaagaagaattctgttaaa
gtacttactaaacattctcctaaacaaatgcaggacaaggcatgtaaatccacccaagag
gctaatcttaaaaacaacctctctgatacacccaatagggaattctatcctgacttcatg
caaaaattagcatcttatgctgctcctgaaagttttgattttcggccaagcattaatgga
ggaggagccggagggggtggaggagatggtaatccaaccgtatgggagcatgaaaaaata
gattggcttcaggatggcaaaaggaaggatggtcatagaagacgacaaaatgatccagat
tacgacccaagtactttatttgtgccagaggattatcttaaaaactgcactccaggaatg
cggaaatggtgggagttgaagagtcaaaattttgatggtgtgattttttataaagttgga
aaattttatgaattatatcatatggatgctgttgttggtgtaaataagcttggattggta
tttatgaaaggcacttgggctcactcaggttttccagaaatggcatttgatagatttgcc
aatgtcttaatccaaaaaggtcataaagttgtacgagtcgagcagatggagactcccgag
atgatggaagcacggtgtaaatctttggcgcacccaacaaggtttgacagagttgtgcgc
cgagaaatatgcaggataatttccaaaggcacacagacctacaatattcttgatggtgac
tattcagagacccacaacaaataccttctttgcataaaagaaaaaacagatgattctgtt
ggcttgcatcgtacttacggagtttgctttgttgatacaacagttgggaagttttatatt
ggccagtttccagatgaccgtcattgttctaggtttagaacacttctggctcattatact
cctgtacagatactttttgagagaggaaacccctctgcagaaacacaaaagatacttaaa
ggcttaatctcttttactattcaagaaagcttgactcctggttctcagttctggaatgca
tctaaaactttaaaaactctcattgaagaagattattttcagaacaaagagaatacaaat
agtggaatcactctgcccccagtaatcagatccatgactgcagaaaatgattcacttgga
cttactcctgcagaaaacagtgaacttgctctctctgctctaggcagttgtgtattctac
cttaaaaaatgtataattgacaaggaacttctatcaatggcaaattttgaagaatacatt
cctgtggatgttgatatagttaacagaaccagatcaagtagtgtgtttgagaaaacaaac
cagcgcatggtattagatggggtaacactagcaaacttggaaatactgcagaatgcaacc
aggagttcaatagagggcacattattagaaaaaattgacacttgttgtacaccttttgga
agaagactcctgaagcaatggctttgtgcaccattatgtaatccttgtgccattaacgat
cgcctggatgcagttgaagatctcctagctgaggctgctaaaatgtctgatatccgtgat
cgtctcaaaaagctcccagatcttgaaaggcttttgagcaaaattcacagtattggatct
tctcttaagaacaatagccatccagacaataaggctattttatatgaggaggctaggtac
agcaagaaaaagattatagatttcttgtctgtactggaaggatttaacataataattgac
attatctcaatgttggaagatactgttggtggctttaagtctaaaatactaaaacaaata
acaaccgtgaaatcaaaaaatccagcaggctgcttcccagacttgaaagcagaacttgaa
agatgggaatctgcctttgatcataccgtagcacggaggacaggtgtggttaatccaaga
actggttttgattccgattacgatgaagctttagcaaatatcaatgaaattgaggaaaac
cttcgtcagtatttggaaaaacaacgcaaaatacttggtgtcagagccgtgatgtattgg
ggagccggcagaaaccgttaccaaatggagattgcagaaactgctgtgcctcaggatttg
cctgatgaatatatcatgaagtccagtagaaagggctataaacgttactggacaaaagac
atagagaagatgttaaatgaaattatcagtgctgaagaacggagagattcagcacaaaaa
gattgcatgaaaagattattctatgacttcgataaaaccagaaaagattggcaatctgcg
gtggaatgcattgctgttctagatgttttgttatgccttgcacgctatagtcagggatgt
gatggaccattgtgccgcccagaaatcttgttgccagagaacacctcaacttttctggag
ctcaaaagttcacgccatccatgcattacaaaaacattctttggagatgatttcatccct
aacgatattgtgataggcttagaagatgaaaaaacaaaaagcagagctacttgtgtcctt
gtgactggtccaaacatgggaggaaaatctacgctcatgagacaggctggtctcttggta
gtaatggctcagttgggatgctttgtacctgctgaatcttgcaggcttactcctgttgat
agagtgttcactagactaggagcttcagatagaattatgtcaggtgggttccatgtgttt
ttgtaa
DBGET
integrated database retrieval system
