Thamnophis sirtalis (common garter snake): 106541725
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Entry
106541725 CDS
T06107
Symbol
VCAN
Name
(RefSeq) versican core protein isoform X1
KO
K06793
versican core protein
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04514
Cell adhesion molecules
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
106541725 (VCAN)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106541725 (VCAN)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tsr00535
]
106541725 (VCAN)
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106541725 (VCAN)
04091 Lectins [BR:
tsr04091
]
106541725 (VCAN)
Proteoglycans [BR:
tsr00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
106541725 (VCAN)
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
106541725 (VCAN)
Lectins [BR:
tsr04091
]
C-Type lectins
Lecticans
106541725 (VCAN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
V-set
Sushi
EGF_TEN
hEGF
Motif
Other DBs
NCBI-GeneID:
106541725
NCBI-ProteinID:
XP_013912719
UniProt:
A0A6I9XAT8
LinkDB
All DBs
Position
Unknown
AA seq
3101 aa
AA seq
DB search
MFKHFLWIYWTLSITCALHKVKVEKSPPVKGSLSGRATLPCFFSTLPTLPPSYHNVSEFL
RIKWSKIEQDIGGKDLKETTVLVAQNGNIKIGQGYKGRVSVPSHPEDIGDASLTMVKLRA
SDAGVYRCDVMYGIEDTQDIVSLAVDGVVFHYRASSSRYTLNFKQAQEICLKNGAVIANP
EQLKAAYEDGFEQCDAGWLADQSVRYPIRQPRVGCYGDMMGKEGVRSYGYRLSNETYDVY
CYVGNINGDVFHVTSPNKVTFEEAQTLCEEQGAVLASVGDLHAAWRNGFDQCDYGWLADG
SVRYPASVARIQCGGGLLGVRTLYRFENQTGFPYPDSKFDAYCFKRKENVTDFSMVELNI
PLESGSAKSLTELNVIPPKTTLHPYVSSLTSEMVMVKQEKKEPRTINLSTLLPQTVTDVS
DLSKMTQTETVLSDLVEITPTQDISDLHEASSESSVEQIEVAPIRISVDSVARNNLSVPL
ETKEETHIGIQPSKIPVEAKSDNKFTTVVIPKELLTSIYESVEEDKVILPDKKLITSSTI
SKVDKIPSSTTILDEKATDTPDSVATSFESKTMSTPAYSTGFEIPVLTPSDRISVVHSTD
SVEKEEHTVASVVSGKMKDTVTFIPILRASDVSSGSEVSIGEGSMFGPESATKHMPFATN
VNEVEGFFTSYGPEMSSHHHLITPTPDLQQETIETDAKYDWTNEENTTEQQPIFSISKED
YPEMVTEGIEIKQSFIVTDTTKTATPVAISEKDYSSSLISDTIENEISKGSGIVTTHTAL
TETITEVVPVIQQESVTRDLITQTLVTDPASPTVVPELYSLPEHDVAAEGSAYEINYTTT
DTSPGIKIRDYDTVTQSELSPGIIDPKLIATGVPPIEPTTKSEHRSSLDKLVVPISREEA
APVTKKFDVGEVDTSTHSPEGSGIKEEDIGMEPISFSVSATSKPMVVTGIATTVGTAVDK
IPPTSASKLLIIKTQPPLIDGGPDEDTNKDVLIIDESISPIKTTTDDDFTGKMVEPEIDT
EYFTSSTITAVSQPTGPPTEVLESQEEPPATSEVATGLENESNIHVYVVAIPQNDTDSLP
GLWDIFGYHIHHELDEPPLDESATEEPCTESPEDVADDILIVDPFFPEIYPLEEDESEEV
DCENTTAITTPPPLQFINGKQQVTPAPKDIKAEEARSDQILAHSKNVNFLHINETNMVSD
NEFLATIQPSESTGDTAATQKLRAEYDIVEEVFSGDPETTHKIHEIIYLHGQSLSDNNEK
LIQSETEHLEDLTAQPESISSASPHTTNMELKEDPEQLILTASTQGWLPHSTTIYLDTGD
DIVAQHDTSVPQENYNTNVRHNVLNSYINLLTTTSSTNLLNISEGSGAVQEDGYKSTSAL
IKPGIQEKHPSQEIFSDDGNPIPPKPSASQSPASLYKETMFIAEHSLLGSLTTDSITEII
LSTTKSQINMEGDKEDSTSSMSLNMDNSTAFSTENLFNSNEYLTDNIRVVSEGSIAVTQT
ISPLKTKEITENRLSINEESGDGELWRKPNKEILLGGPTSQVVSIDSQFLDAGFGGIDSM
TQATTQTSFPMRSEYESSKGKEIGSISSEPPLNHAIHTNHTMDVLEAELYGDATDTRIES
QVSKNETYSQRASDKSEASVLLPFNDKSVVETNEEVITTITIQEQTNLFETSSMANISPA
ISVGMKLIPELIETDRTAQHSSSTAQDSIVVTNNITLQKGSSEFIVNEGMESLQLEDRKN
ISPTTFAKTIDLVEIGSGEESVNDTSSMKLQNYTSKEKEINSKLPLIEPGSGDVDSITYS
STKKPVSSEFLVQESKNQIKNKSEESSMVFQHPLVTTLNISSTTIVTLMNQNITGAFVNK
SKMAQEMPNVLGTKASDKTSHLEGEIYYEEKRKIIETESVTQQSEISGTSKFNTHAKELQ
FDINSVTESLQKYPPSYDKTASTLLRNVEKEEWLEEKITPAKDSHTLPPPSTIYRPITTA
THVPFLSKQDSKNELFLVHTTAPGNSATLKESSNALKLDTPYPKSSEELFSEEQHEEFER
HNDDSKYEFKYPSKLEDNLSSASDETFPVLSIVHHETSTINWFISEQDQNKEKSYQGEQN
VLAATDRTSQGKAWVFVKHENKTSASKLFIEPPSSGTIETPHATLLSKVSGAGNHDGSGE
GSGWQDVIEKKSESFTQLPNWELPLLTRPPHYSDIENKGDTMDVSQKGPNTQTEKHEKTA
TSDSDISESFSYESSTNNIKDYEDLIPVAGFKKNYSEDISSFIDIIGTGHGVILDETTII
DVDNLKSNSNIEDIIDHTTKRPGRHSTYNIYTSAIKIQNTTPEMLIDDKITDNQGSSVGN
KFIHSESILSDHTPTLEVGSGDIASFTTESEISQDPLKTSLLLPTLPLLVSSTISSPITS
NENTRDVGDGIERTESEEMIQSKSEQPTPSDNQVVADESEITTMSGEGQVQMDKEKPVVL
PSTLANMPLKTGHTLTTYQPEESTASNQLISQNVTKAKEISYEGMKIELTKSTETVMKNL
LLTTQTPKLPVTVHLLNGVSEHPEEEVMQSSSSSSDSSKHGLPAPETFREVSADAAVTYK
PALKDLSNNTAFPNVELENSFLESITTSHGHVQETKEMPKDATEKTTLFEEFISKDVIPS
SFFHSDAEDLLEEETPEKVKELNQLDGNSADGSLLWIHSIPSSIPHESKTGGVFGADGEA
SVWPISPPPSADKTVKLQTVQPKSTTISSNLVNEYSGPGSISDSNKQTINTEDVNANELV
TPPFLLLDVTNGSDFLIGQGEGSVEGSAIQIPGQDLCKSNPCLHGGTCYPRDSFYICTCM
PGYSGDRCEIEIDECQSSPCRNGATCIDGVNTFACLCLPSYVGALCEKDTETCDYGWHKF
QGQCYKYFAHRRTWDAAERECRLQGAHLTSILSQEEQLFVNRIGHDYQWIGLNDKMFEND
FRWTDGNMLQYENWRPKQPDSFFSSGEDCVVIIWHENGQWNDVPCNYHLTYTCKKGTVAC
GQPPVVENANTFGKMKPRYEINSLIRYHCKDGFIQRHVPIIRCQGNGRWDLPKITCMNPS
SFQRTYSKKYYYKNYSPGKVNSFNSSKHFHRWIRTWQDSRR
NT seq
9306 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaacatttcttgtggatatattggaccttatccataacatgtgctctccacaaa
gtgaaagtggagaaaagtccaccagtgaagggctcactctctggaagagccaccctccca
tgctttttttcaactttgccgactttgcctccaagctatcacaacgtaagtgagtttctc
cggattaagtggtcaaagattgaacaggacataggtggaaaagatctcaaagaaactaca
gtgttggtagcccagaatgggaatatcaagattggacaaggctacaaaggaagagtgtca
gtaccaagccatccggaagatattggcgatgcatcattgactatggtgaagttacgtgca
agtgatgctggggtttatcgctgtgatgtaatgtatggaattgaagatacccaagacatt
gtttcactggcggttgatggtgttgtgtttcactatcgtgcatcttccagtagatatact
ctgaatttcaaacaggctcaggagatctgtttgaagaatggtgctgtaattgcaaaccct
gaacaactgaaagctgcatatgaagatggatttgagcaatgtgatgctggctggttagct
gatcaatctgttagatatcctattaggcaacctagagttggctgttatggagatatgatg
ggaaaagaaggagttagatcctatggatatcgcctttctaatgaaacttatgatgtctat
tgctatgttggaaacataaatggtgatgtctttcatgtaacttctcccaacaaggttacc
tttgaagaagctcaaactctgtgtgaggaacaaggggcagttcttgcttcagttggtgat
ctgcatgctgcctggagaaatggttttgaccaatgtgattatggttggctggcagatggc
agtgtgcgctatcctgcttctgtggcaagaatccaatgtggtggaggtttacttggagta
cgaacattatatcgctttgagaatcaaactggctttccttacccagatagcaaatttgat
gcatattgttttaaacgtaaagagaatgtaacagatttttcaatggtcgaactgaatatt
cctttggaaagtggatctgccaaatcgttaactgaactaaatgtaattcctccaaaaact
acacttcatccttacgtatcttcactcacctcagaaatggttatggtaaaacaagaaaag
aaggaacctcgtaccattaatttatctacccttctacctcaaactgttacagacgtttct
gatttgtcaaaaatgacccaaacagaaactgtattaagtgacttagtggagattacacct
acccaagatatttctgatctccatgaagcaagttctgaaagctcagttgaacaaatagaa
gtagctccaataagaatttctgtggattctgtagcaaggaataatctgagtgtaccttta
gaaacaaaggaagaaacacatattggcattcagcccagcaaaataccagtagaagcaaaa
agtgataataaattcacaactgttgtcattccaaaagaattgttgactagtatttatgaa
tctgtagaagaagataaagttattttgccagataagaagctaataacatctagtaccatt
tctaaggtagataaaattccatcttctacgacaatcttagatgaaaaagccacagataca
ccagattcagtagcaacttcatttgaaagcaaaacaatgtctaccccggcttattcaaca
ggctttgaaataccagtgcttacaccatctgacagaattagtgtggtacactcaacagat
tcagtggagaaggaagagcacacagtagcatctgtggtttcagggaagatgaaagatact
gtgacatttattccaatactgagagcttcagatgtatcttcaggatcagaagtatcaata
ggtgaaggaagcatgtttgggcccgagtctgccacaaagcacatgccttttgccacaaat
gtaaatgaagtagaagggttctttaccagctatggacctgaaatgtcaagtcatcatcac
ctaataacaccaacaccagatttgcaacaagaaacaattgaaacagatgcaaaatatgat
tggactaatgaggagaatacaactgaacagcaaccaatcttcagtatttcaaaagaagat
tacccagaaatggtcactgaaggtattgaaataaaacaatcttttatagttacagatacc
acaaagactgcaactcctgttgcaatttcagagaaagactacagcagttctttgatttca
gacaccatagaaaatgagatttctaaaggttcgggtatagttactactcatacagcactc
acagaaaccataacagaagtcgttccagtgattcaacaggaatctgttactagagatcta
attacgcaaacattggtcactgacccagcttcccccactgttgttccagaattatattca
ttacctgaacatgatgtagctgctgaaggatctgcatatgaaataaattacactactaca
gatacaagtcctggtataaaaataagagattatgacacagtcacacagtctgaattgtct
cctggaatcattgaccccaagctgatagcaacaggtgttcctcccatagaaccaactacc
aaaagtgaacataggtcttccttggacaaattggtagttcccatctctagagaagaagct
gctcctgtcactaaaaagtttgatgtgggggaagtagatacttcaactcatagcccagaa
ggatcaggaataaaagaagaggacataggaatggaacccatttcattttcagttagtgca
acaagcaaaccaatggtggtaactggcattgccactactgtcggtactgcggtagataaa
atcccaccaacttcagcatccaaacttttaattatcaaaacacagccacctctgattgat
ggggggcctgatgaggatacaaataaagatgtgctgataattgatgaatctatttctccc
attaaaactactactgatgatgattttacaggcaaaatggtagagccagaaattgatact
gaatattttacctcatcaactatcactgcagtttcccaacccacaggaccacccacagag
gttttagagtctcaagaagagcccccagctacttcagaggttgctacagggttggaaaat
gaatctaacatacatgtatatgttgttgctattccacaaaatgatacagattcattgcct
ggactttgggatatatttggttaccacatccatcatgaactagatgagcccccactagat
gaatcagccactgaggaaccctgtacagaaagtcctgaggatgttgctgatgatatcctc
attgtcgaccctttctttcctgaaatatatcctctggaggaagatgagagtgaagaagtt
gactgtgaaaatactactgctatcacaactcctccaccactgcagtttattaatggaaag
cagcaagtgaccccggcacctaaagatataaaagctgaagaagcaagaagtgatcaaatt
ttagcgcattccaaaaatgtaaattttttgcatatcaatgaaactaacatggtgtctgat
aatgagttcttggccacaatacagccaagtgaatcaactggagatactgctgctacacaa
aagctaagagcagaatatgatatcgtggaagaagtatttagtggagacccagaaactaca
cataaaattcatgagataatatatctccatggccagtccttatcagacaataatgagaaa
ttgatacagtctgaaacagaacacttagaagatttaactgcccagcctgaatcaataagt
tctgcttctccccacacaacaaacatggagctaaaagaagaccctgaacagttaattcta
acagcttctactcaaggttggttgcctcattctaccactatatacttagacactggagat
gacatagtagctcaacatgacacttctgttccgcaagaaaattataatacaaacgttaga
cataatgtacttaattcttacataaatttattgacaaccacgtccagtactaatttattg
aatatatcagaagggtctggagctgttcaagaagacggttataaatcaactagtgcatta
ataaaaccaggaatacaagaaaaacatcctagtcaggaaattttctcagatgatggaaat
cctattccacctaaaccttctgcttcacaatctcctgcttctttgtataaagagaccatg
tttattgctgaacatagtcttttaggatctttgactactgactctattactgaaataatt
ttgagcactactaaaagtcaaattaatatggagggggataaggaagacagtacaagctct
atgtctttaaatatggataattcaactgctttcagcacagaaaacttgtttaatagcaat
gaatacttaactgataacatcagagttgtgagtgaaggatccatagctgtcacccaaaca
atctctcctctcaaaactaaagaaataacagaaaatagattgtccattaatgaagaatct
ggtgatggagaattgtggaggaaacctaataaagaaatacttttggggggtcctaccagc
caagtggtaagtatagactcccaatttctagatgcaggttttggaggaattgatagtatg
actcaagccactacacagacttcatttccaatgaggtctgaatatgaaagcagtaaagga
aaagaaataggtagtatttcaagtgaaccaccattgaatcatgctattcatactaatcat
acaatggatgtgttggaggctgaattgtatggggacgctacagacactagaatagaaagt
caagtatcaaaaaatgaaacttacagccaaagagcatcagataaatcagaggcaagtgtg
ctattgccatttaatgacaagtctgttgtggagacaaatgaagaagtgataacaactata
acaatacaagagcaaacaaatttgtttgaaacatctagtatggcaaatatttctcctgcc
atcagtgtaggaatgaagttaataccagaattaatagaaactgataggactgcacaacat
tccagcagtactgcacaggattccatagtagtgacaaataacataactctgcagaaagga
agttctgaattcatagtaaatgaaggaatggaatctcttcagttggaagatagaaaaaac
atttctccaactacctttgccaaaacaattgatcttgtggagataggctctggagaggaa
tcagttaatgacacaagtagtatgaagctgcaaaattatacttcgaaagaaaaagaaatt
aatagtaaattaccattgattgaaccaggttctggagacgtagattctattacatactct
tctacaaaaaaaccagtttcatctgaatttttggtacaagaatctaaaaatcaaataaaa
aataaaagtgaggaatctagcatggtatttcagcatccattggttacaacattaaacata
agtagtaccacaatagtaaccttaatgaaccaaaatattacgggagcattcgttaataag
tcaaaaatggcacaggaaatgccaaatgtattaggaacaaaagcttctgataaaacctca
catttggaaggagaaatatattatgaagaaaaaagaaaaattatagaaacagaatccgta
acacaacagtcagaaatttctggtacttctaaatttaatacacatgcaaaagaactacaa
tttgatattaattctgttactgaatctttacagaaatatccgccttcatatgataaaact
gcaagcactttattaagaaatgtagagaaagaagaatggttggaagaaaagattactcct
gccaaagacagtcacacccttccacccccatctacaatatatagaccaataaccacagca
actcatgttccatttttgtcaaaacaagactcaaaaaatgaattatttctagttcatact
actgcccctggaaattctgctacattaaaagaaagttctaatgcattaaaacttgacact
ccttatcctaaaagttcagaagaacttttttcagaggaacaacatgaagaatttgagagg
cataatgatgattccaaatatgaatttaaatatccttccaagctagaagacaatttgtct
tcagccagtgatgaaacctttcctgtgttatctattgtacatcatgagacatctactata
aattggttcatttctgaacaggatcagaataaagaaaaatcttaccagggagaacaaaat
gtactagctgcaacagatagaacttctcaagggaaagcctgggtgtttgtaaagcatgaa
aataaaacttctgcttcaaaattatttatcgaacccccttccagtggaacaatagaaaca
ccacatgccactttattatccaaagtgtcgggtgctggaaaccatgatggttctggggaa
ggatctggctggcaagacgtaatagagaaaaaatctgaatcatttacccagttaccaaac
tgggagctaccacttctaactcgtcctcctcattattcagatattgagaacaaaggggac
acaatggatgtatcccaaaaaggaccaaacactcagacagagaagcatgaaaaaacagca
acatctgatagtgacatctcagagagtttttcatatgagagttccacaaacaacataaaa
gactatgaagatcttatccctgtagctggtttcaaaaaaaattattctgaagatatttct
agcttcattgatattattggaacagggcatggagtaatacttgatgaaacaacaattatt
gatgttgataatttgaaatcaaattcaaatattgaagatattatagatcatacaactaaa
aggcctggaagacactcaacatataatatttatacatcagcaattaaaattcaaaataca
acacctgaaatgttaattgatgataaaattacagataaccaaggcagttctgtaggtaat
aagttcatacacagtgaatctatcttatctgatcataccccaacattagaggtgggttca
ggagatattgcgtctttcacaacagaaagtgaaatttctcaggatccacttaaaacatcc
cttctgcttccaacactacctcttcttgtcagttctaccatatcatctccaattacttct
aatgaaaataccagagacgtaggagatggcattgaacgtacagaatctgaagaaatgata
caatccaaatctgaacaaccaacaccatcagataatcaagtagtagctgatgaaagtgaa
attaccaccatgtcaggagagggacaagtacagatggataaagagaaacctgtggttctt
ccttcaactctagcaaacatgcctctaaaaacaggacacactttgaccacatatcaacca
gaagaaagtactgcttcaaatcagcttatttcacaaaatgtaacaaaagctaaagaaata
agctatgaaggaatgaaaattgaactcacaaaatcaacagaaacagttatgaagaacttg
cttctcacaacgcaaacacccaaactgcctgtgactgtgcatttactcaatggtgtttct
gaacacccagaggaagaagtcatgcaaagttcttcatcatcaagtgattctagcaaacat
ggtttgccagcaccagaaacttttagagaagttagtgctgacgcagcagtaacttacaaa
cctgctctgaaagatttgtccaataatacagcatttcctaatgtggaactggagaacagt
ttccttgaaagtataactacatctcatggacatgtacaggaaacaaaagaaatgccaaaa
gatgctaccgaaaaaacaactctttttgaagaatttatttcaaaagatgtgataccatca
agcttttttcattctgatgctgaagacctgttagaagaagaaactcccgagaaggtaaaa
gagctaaatcagttagatggaaatagtgctgatggaagtttgttatggatacatagcata
ccttcttcaattccacatgagagtaaaacgggtggagtgtttggtgctgatggggaagcc
agtgtttggccaatctcaccaccaccatctgcagataaaaccgtgaaacttcaaacagtc
caaccaaagtcaaccacaatttcttctaaccttgtaaatgaatattcaggtcctggaagc
atttctgattcaaacaaacaaacaataaatacagaggatgtaaatgcaaatgaacttgta
actccaccatttttacttctggatgttaccaatggatcagatttcctgattggtcaaggt
gaaggttcagttgaaggctcagcaattcagatcccaggccaagatctatgtaaaagcaat
ccatgcttgcatgggggcacttgttacccacgtgactctttctatatctgcacctgtatg
ccaggttacagtggtgatcgttgtgaaatagaaatcgatgaatgtcaatccagtccttgt
agaaatggtgccacgtgcattgatggtgtcaatacatttgcttgtctttgtcttccaagc
tatgtgggagcactttgtgaaaaagacactgagacctgtgattatggatggcacaagttt
caagggcaatgctacaaatactttgcccatcgcaggacgtgggatgcagctgagagagag
tgccgcctgcagggcgcccatctaaccagtatcttgtctcaagaagaacaactgtttgta
aaccgcataggacatgactatcagtggattggcctaaatgataagatgttcgagaatgac
ttccgctggactgatggcaatatgctgcaatatgaaaactggagaccaaaacagccagat
agtttcttttcttctggagaagattgtgttgttataatttggcatgaaaatggtcaatgg
aatgatgtaccatgtaattatcacctcacttacacatgcaagaaaggaacagttgcttgc
ggccagccaccggtggtagaaaatgcaaatacctttggaaagatgaagccccgttatgaa
attaactcattgatcagatatcattgtaaagatggcttcatccagcgacatgttccaata
atcagatgtcaaggaaatggtcgatgggatttacctaaaattacctgcatgaatccatct
tcattccaaaggacttattctaaaaaatactattataaaaattattcaccaggaaaggta
aactcatttaattcatcaaaacattttcatcgttggatcaggacatggcaagattcaagg
cgttga
DBGET
integrated database retrieval system
