Thamnophis sirtalis (common garter snake): 106541775
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Entry
106541775 CDS
T06107
Symbol
SCAF8
Name
(RefSeq) protein SCAF8
KO
K13191
RNA-binding protein 16
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106541775 (SCAF8)
03041 Spliceosome [BR:
tsr03041
]
106541775 (SCAF8)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106541775 (SCAF8)
Spliceosome [BR:
tsr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
106541775 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
DUF3525
Motif
Other DBs
NCBI-GeneID:
106541775
NCBI-ProteinID:
XP_013912785
UniProt:
A0A6I9XF30
LinkDB
All DBs
Position
Unknown
AA seq
1296 aa
AA seq
DB search
MTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA
PRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTP
VLPGTTATLSNNTPGTPVTPATPANVIQSLPDPWVSQITNTDTLAAVAQILQSPQGQQLQ
QLIQTLQIQQQKPQPSLLQALDAGLVVQLQALTAQLTAAAAAANTLNPLEQSVSFNKKLI
DRFGDFGEEADLNEESKKETPTSQLPLVSESVNNSLFHQLAEQLQQQNLEHLRQQLLDQQ
PPKVSPEETQEENFGSEHSASPSQDSSHQQFLEVETKLDNSMDVQQQDMDIDEVQEVVEQ
EVFEQEEKKPAVLSRSRTRSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSR
SYSSERRAREREKERQKKGLPPVRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIE
SINMIPPRGCAYVCMVHRQDAYRALQKLSSGSYKIGSKIIKIAWALNKGVKTEYKQFWDA
DLGVSYIPWEKVKMDDLDGFAEGGMIDQETVNSEWESTRTSETVKENVQITPSATVEKTT
VVTTQTETYTQSVAMLQMPVAPTVPAVNLVPPAFPVTMSVPPPGYSGIPPPPFLRASFNP
SQPPPGFMPPPVPPPVPPPVVPTSLVQPSLTIAQESMKDFSSLVLPGGTVSNSLTTPTLS
AGSVFSSLSKNSSELDEKGSFRADLQTSSTENRTVQDDVSSSSGLTEGVQPPGITTSSGH
VGGIQPPHVSSSAGLVQPVSVSSSSGLLTRIQPPTASNSSGLTTGVQAPSISSSSGLLTG
LQPINVSSSSSLLMGMQPPIVSNNTGRLSGIQPSIVSSSSGLLTALQPPIVSSNSAILGL
PPPIVSSSSGLLGLPPPNISGGSGLLGLQPPTGIQNLPHLTMGSQRLHGIPLVEMRSGLM
PQPPGPRFPLLQPGMPPQRTVPPPAILDPSLPPPRVPFLPGDIFAQTERSFATSSRQNMD
ISNPDKRLPIGEDSIQQEGDRDYRFPPVESRDRTSSVDIRDSIGRPPLDPREGLGRPPID
GREHLIRPHIDLRENFGRPGIDNLRREHFAFNSEKHWGQRGDYDEREHQNFPIYGGLKGF
QDFRERYRQTNYRFETRSGPTWNRGLEQDAHRDFDDRRRPWERQRDRDDRDFNFGREING
NRFGRERTQNNWIPPPHPRAFEYFEGGASQQKVDSVPQVNGENPETENQPSAVQVQDELE
LYEKLATSNETKKEKSDTEAELENEPVVESTETEGT
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgacacagattactaaggcagcaatcaaggccataaagttctacaaacatgttgtacag
agtgttgagaaattcattcaaaagtgtaaaccagaatacaaggtgcctggattatatgtc
attgactcgattgtacggcagtctcggcatcagtttggacaagaaaaggatgtctttgct
cctcggtttagcaataacatcattagcactttccagaatttatatcgttgccctggagat
gataagagtaaaattgttagagtgctcaatttgtggcagaagaataatgttttcaaaagt
gaaattatccagcctctattagatatggcagcaggaattcctcctccagttgtgactcct
gttttgccagggacaactgctactttgagtaataatacaccaggaactccagtaactcct
gctactccagccaatgtaatccaaagtttacctgatccatgggtatctcagataactaac
acagatacgcttgctgctgtagcacagatcctgcagagtccacaaggccaacagcttcag
cagttaatacagacattgcagattcaacaacaaaaaccacaaccatcattgcttcaagca
ctagatgctggtctcgttgttcagctacaggctctcactgctcaacttacagccgccgcc
gccgcagcaaatacactcaatccactagaacagagtgtctcttttaacaagaagctgata
gataggtttggagattttggagaagaagctgatttgaatgaagagtccaaaaaggaaact
ccaacttctcaattgccccttgtatctgaatccgtgaacaactcactttttcatcagcta
gctgaacaactacagcaacaaaacttagaacatcttcggcagcagcttctagatcagcag
ccaccaaaggtaagccctgaggaaactcaagaagaaaattttggttctgagcattcagca
tcaccttcacaagacagcagtcaccaacagtttttagaagtggaaacaaagcttgacaat
tcaatggatgttcaacaacaggacatggatatagatgaagtccaggaagttgtagaacaa
gaagtctttgagcaagaagaaaagaaaccagcagttctttcaagatcacgaacacgctca
agatcacgttcgaggtcaccaagaaaaagaaggtcaagatcacggtctggttctcgaaag
cgtaaacaccgaaagcgctcacgttctagatcaagagaaagaaaaaggaagtcatcaagg
tcatattcaagtgaaagaagagctagagaaagggaaaaagaaagacagaaaaaagggtta
cctcctgtccgatcaaaaacactaagtgtctgcagtaccacgctttgggttgggcaagtg
gacaagaaagccacacagcaagatttaaccaatttatttgaagaatttggacaaatagaa
tctataaatatgatccctcccagaggttgtgcatatgtctgtatggttcataggcaagat
gcttatcgtgctcttcagaaactaagttctggatcctacaaaattggatctaaaattatt
aagattgcatgggctttaaacaaaggggtgaaaactgaatacaaacagttttgggatgca
gatcttggagtatcatatataccctgggaaaaagttaagatggatgatttagatggcttt
gcagaaggaggcatgattgaccaggaaacagtaaatagtgaatgggaaagtacaaggact
tcagaaactgtaaaagagaatgtacagataaccccgagtgcaaccgttgagaaaaccaca
gttgtcacaacacagacagaaacttacacacagtctgtcgctatgttacagatgcctgta
gctccaactgtgccagctgttaatttagttccacctgcgtttcctgttacaatgtctgtc
cctccacctggttacagtggaattcctccgcctccattcttgagagcaagctttaatcct
tcacaaccacctcctggtttcatgcctccacctgttccaccacctgttccaccaccagta
gttccaacatctcttgtacaaccgtcgctgactattgctcaagaatcaatgaaagatttt
agcagccttgttctaccaggtggtactgtttctaatagtcttacaacaccaacattatct
gccggaagtgtcttttcttctctttcaaagaacagttcagaattagatgaaaaaggatct
tttcgtgctgaccttcagacctcttctaccgaaaacagaactgttcaagatgacgtttca
agcagttctggacttaccgagggagtacagccacctggtatcacaaccagttctgggcat
gtagggggaatccagccaccccatgtctcaagtagtgctggacttgtgcagccggtcagt
gtctccagcagttctggacttttgacaagaattcaaccacccacggcttcaaatagctct
ggtcttacaacaggtgttcaggctccaagtatctcaagtagctctgggcttttgacggga
cttcagcccataaatgtttcaagcagctccagccttttaatgggaatgcaaccacccata
gtctcaaataatactggacgtttgtcaggaatccagccatccattgtatcaagtagttct
gggcttttgacagcactccagccacccattgtatcaagcaattctgcaattttaggattg
ccaccaccaatagtttcaagtagttctggactgttgggattaccaccgccaaatatttca
ggtggttctggcctgttgggactacaaccacccactggaattcaaaatttaccccattta
actatgggtagtcaacggttgcatggaattcctctagtagaaatgcgatcgggattaatg
ccacagccacctggtcctaggtttccactactgcaacctgggatgccaccccaacgtaca
gttcctcctccagccatacttgatccatcccttcctccacctagagttcctttccttcca
ggagatatttttgctcaaacagagaggtcatttgcaacttccagtaggcaaaatatggat
atttctaacccagataaaagattgcctattggggaagatagcattcaacaagaaggagat
agagactatcgattccctccagtggaaagtagagatcgaacatcttcagtagatatcagg
gattctattggaaggccaccactagatccaagagaaggtctaggtcgaccacctatagat
ggaagagaacatcttatcaggccacatatagatttacgggagaactttggaaggccaggt
atcgataatttaagaagagagcattttgctttcaactcagaaaaacattggggtcaaaga
ggagattatgatgaaagagaacaccagaactttcctatatatggtggtctcaaggggttc
caggactttcgagagagatatcgccaaacaaactacagatttgaaactcgaagtggtcct
acctggaacagaggacttgaacaagatgctcacagagactttgatgaccgtcgtagacca
tgggaaagacaaagggacagggatgatagagattttaattttggtagagaaattaatgga
aacagatttgggagagagagaacacagaacaactggataccccctccacatccaagagcg
tttgaatattttgaaggtggtgcttctcaacaaaaagttgatagtgtaccccaagttaac
ggtgaaaacccagagacagagaatcagccatctgctgtgcaagtgcaggatgaattggaa
ctttatgaaaagttggcgacttcaaatgagacaaaaaaagagaagagtgacacagaagct
gaattagaaaatgaaccagtggtagaaagcacagaaactgaggggacataa
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integrated database retrieval system
