Thamnophis sirtalis (common garter snake): 106541817
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Entry
106541817 CDS
T06107
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106541817 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsr03041
]
106541817 (DHX38)
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106541817 (DHX38)
Spliceosome [BR:
tsr03041
]
Complex C
Other components
Step II factors
106541817 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
Flavi_DEAD
nSTAND3
SLFN-g3_helicase
SRP54
AAA_16
PhoH
AAA_7
AAA_30
Motif
Other DBs
NCBI-GeneID:
106541817
NCBI-ProteinID:
XP_013912831
UniProt:
A0A6I9XF76
LinkDB
All DBs
Position
Unknown
AA seq
1231 aa
AA seq
DB search
MEERAEAAAEASLHRLAGLAPEGQVGGLVLVKRRSAAEEQHVFKIPAPRASLLGLDLLAA
QKRREREDRPAKRPRGGADEGTDEPAREPPEEPGDGAGRGGRRRRDRQYRSAQVETPSHP
GGVSEGFWERSRQRERERREQGVFASSKEKERRREQERKRDRETRDRGRRSGRAEKEGSS
ERSRSAPKTEPESPRQPPKDAATPSHSSWEEEDSGYSGSRRSQWESPSPAPSCRDSERSH
RSPAQLRESERRGERERSSRNRGPEETPLPTPTYKYNEWADNRRHLGGTPWLSRGRGRSE
DGEDGIAFETEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAASSEEYVRKREQHLQRQ
KQTRISAQRRQINEDNERWETNRMLTSGVVHRLEVEEDFEEDNAARVHLLVHNLVPPFLD
GRIVFTKQPEPVIPVKDATSDLAIIARKGSLLVRKHREQKERKKAQHRHWELAGTKLGNI
MGIKKEEEEESGQVLAEDGTVDYRTEQKFAGHVKEKSEASSEFAKKKSIVEQRQYLPIFA
VQQELLTVVRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKR
VSEEMNVALGEEVGYAIRFEDCTSESTVIKYMTDGILLRESLREADLDHYSAIIMDEAHE
RSLNTDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDVLFS
KTPQEDYVEAAVKQALQVHLSSAPGDILIFMPGQEDIEVTSEQIVEHLEELENAPALAVL
PIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIG
MDALQIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVL
LLKSLGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALS
KMLIVSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQVREKFAVPESDHLTYLNVYL
QWKNNSYSTLWCNEHFIHAKAMRKVREVRAQLKDIMVQQHMSLASCGTDWDVVRKCICAA
YFHQAAKLKGIGEYVNIRTGMRCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAV
DGEWLAELGPMFYSIKHAGKSRQESRRRAKEEASAMEEEMALAEEQLRARREEQERCNPM
GSVRSTKIYTPGRKEQGQVATPRHTPARFGL
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcgcgcggaggcagcggcggaggcctcgctgcaccggctagccgggctggcg
cccgaggggcaggtggggggactcgtgctggtcaagcggcgcagcgccgccgaggagcag
cacgtcttcaagatcccagcgccgcgcgcctccttgctgggcctcgacctgctggccgcc
cagaagcgccgcgagcgggaggatcggccggccaagaggccccgcggcggcgccgacgag
ggcacggacgagccggcccgggagccgccggaggagccgggcgacggggcggggcggggc
ggccggcggcgcagggacaggcagtaccgctcggcccaggtggagacgccgtcgcacccg
gggggcgtcagcgagggcttctgggagcgcagccggcagcgggagcgcgagcggcgggag
cagggcgtcttcgcctcgtctaaggagaaggagcgccggagggagcaggagcgcaagcgc
gaccgagagacccgcgaccgcggtcgccgcagcggccgcgccgagaaggagggctcctcg
gagaggagcaggagcgccccgaagaccgagccggagagcccgcggcagccgcccaaagat
gcagccacgccgtcgcactccagctgggaggaggaagacagcggttacagcgggtcccgc
cgctcccagtgggagtctccctccccggctccctcctgccgggactcagagcggagccac
cggagccctgctcaacttcgggagagcgagaggcggggggaacgagaacggtccagcagg
aacaggggtcccgaggagacgcctttgcccacccctacttataaatacaatgaatgggct
gacaaccgaaggcatttgggcggaaccccttggctctccagaggcagggggcgatctgag
gatggggaagacggcattgcctttgaaacggaggaagaacggcagcagtgggaagacgat
cagcggcaagctgaccgggactggtatatgatggacgagggctacgatgaattccacaac
cctctggctgcctcctcggaggagtatgtgaggaaacgtgagcagcacctgcagaggcaa
aagcagacgcgcatctcagctcagcgcaggcagatcaatgaggataacgagcgctgggag
accaaccgcatgctgacgagtggcgtggtgcaccggctggaggtggaggaggactttgag
gaggataacgctgccagggtgcatctcctggtgcacaacctggtacctccttttctggat
gggcgcattgttttcaccaagcagcctgagcccgtcatccctgtcaaagatgccacctcc
gacttggccattattgcccgcaaaggcagcctgttggtgcggaagcatcgggaacaaaaa
gagcgcaagaaggctcagcacaggcactgggagctggcaggtacaaaacttgggaacata
atgggcataaaaaaggaagaggaggaggaatcggggcaagtcctggccgaggatggcacg
gtggattacaggacagaacagaagtttgctggacacgtgaaagagaagagtgaggcaagc
agcgagtttgccaagaaaaagtccattgtggagcagaggcagtacttgcccatattcgct
gttcagcaagagcttttgacagttgtcagagacaacagtattgtgattgtggtgggagag
acgggcagtggcaaaacaacgcagttgacgcagtacctgcacgaggatggctacacagac
tatggcatgattggctgcacgcaaccacgccgagtggcggccatgtctgtggccaaacgt
gttagtgaggagatgaacgtggcccttggggaggaggtgggctacgccatccgctttgag
gactgcacttcggagagcaccgtgattaagtacatgacggatgggatcttgctacgggag
tctctgcgggaagctgatctagaccattacagcgccatcatcatggacgaggctcacgag
cgctcgctcaacaccgatgtgctgtttggccttctgcgagaagtggtagcccgccgctca
gatctcaagctgattgttacctcggccaccatggatgcagagaagtttgcgtctttcttt
ggaaacgtgcccatcttccacatcccaggccgcacatttccggttgacgttctctttagc
aagactccgcaagaagactatgtggaggccgccgtaaagcaggccctgcaggtccacctc
tccagcgcccctggagatatcctcattttcatgccaggccaggaggacatcgaggtcaca
tctgagcagattgtggaacatctggaagagctggaaaatgctcctgctctggctgtgctg
cccatctactctcagctaccctcagatttgcaggccaagatattccagaaggcaccagat
ggagtcaggaagtgcattgtggccaccaatatcgcagaaacctcgttgacggttgatggg
atcatgtttgtgatcgactctggatattgcaaactgaaggtcttcaacccacggattggc
atggatgccttgcagatctatccaatcagccaggctaatgcaaatcagcgctctggccga
gccggaaggacaggcccaggtcagtgtttcagactctacacccagagcgcttacaagaat
gaactgctgaccaccaccgtcccagagatccagcgtaccaatctggccaatgtggtgctg
cttctcaagtctttaggggtgcaggacctgctacagttccactttatggatccccctcca
gaagacaacatgctcaactcaatgtaccagttgtggattctcggggcgcttgataacaca
ggtggtctgacgtcgactggacgcctgatggtggagtttcccctggatccagctctctcc
aagatgctgatcgtttcttgtgacatgggctgcagttcagagatcctcctgattgtctcc
atgctctcagtcccagccattttttaccggccaaagggtcgggaggaagaaagcgaccag
gtgcgagagaagtttgctgttcccgagagtgaccacttgacttacctgaatgtttatctg
cagtggaaaaataacagttactcaacgctctggtgcaatgagcacttcattcacgccaag
gccatgcgcaaggtgcgggaggtgcgagcgcagctgaaggacatcatggtgcagcaacac
atgagcctggcttcctgcggcaccgactgggatgtggttcgcaagtgcatctgtgctgct
tactttcaccaggctgcaaaattgaagggcatcggggaatacgtcaacatccgcacaggg
atgcgctgccacttgcaccctaccagctcgctttttgggatgggctacactcccgactac
atcgtctaccatgaactggtgatgaccaccaaggagtacatgcagtgtgtcacagctgtg
gatggggaatggctggctgaattggggcccatgttctacagtatcaagcatgctggcaag
tctcgtcaggagagccggcggcgagccaaggaggaggcctctgccatggaggaagagatg
gctctggcggaagagcagctccgcgctcgcagagaagaacaggagcgttgcaacccgatg
ggcagcgtcaggtccacaaagatttatacaccggggcgcaaggagcaaggccaggttgcc
acccctcgccataccccagcccgctttggcctctag
DBGET
integrated database retrieval system
