Thamnophis sirtalis (common garter snake): 106541901
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Entry
106541901 CDS
T06107
Symbol
HMBOX1
Name
(RefSeq) homeobox-containing protein 1 isoform X1
KO
K24885
homeobox-containing protein 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsr03000
]
106541901 (HMBOX1)
Transcription factors [BR:
tsr03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
106541901 (HMBOX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HNF-1_N
Homeodomain
Homeobox_KN
HTH_3
AbiJ_NTD3
CUT
HTH_24
DUF494
HTH_26
HTH_37
HTH_31
HTH_23
Motif
Other DBs
NCBI-GeneID:
106541901
NCBI-ProteinID:
XP_013912938
UniProt:
A0A6I9XBJ5
LinkDB
All DBs
Position
Unknown
AA seq
455 aa
AA seq
DB search
MLRTFPVVLLETMFHYTDEPRFTIEQIDLLQRLRRTGMTRHEILHALETFDRLDQEHSDK
FGRRSAYGSGSCSNSTNNVPASSSTATASTQTQHSGMSPSPSNSYDTSPQPCTTNQNGRE
SNERLSAFNGKMSPTRYPLANSMAQRSYSFEASEEDLDVDDKVEELMRRDSSVIKEEIKA
FLANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKKRAFYRWYQLEKSNPGATLSMR
PAPLPVEEPEWRQTPPPVTATSGTFRLRRGSRFTWRKECLAVMESYFNENQYPDEAKREE
IANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIEAAILESHGIDVQSPG
GHSNSDDVDGNDYSEQESWQVRNGEEEGRCTEGGREAEKLEEDRRICSKQDDNTSHSDHQ
DPISLAVEMAAVNHTILALARQGTSEIKTEALDDD
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgctgagaacctttccagtggttctgctggaaaccatgtttcactacacagatgaaccc
agattcaccatagagcaaatagatctacttcaacgcctgcggcgtactggtatgacacgc
cacgaaatcctccatgctttggaaacctttgaccgtcttgaccaggaacatagtgacaag
tttgggcggcggtctgcctatgggagtggatcctgtagtaacagcaccaacaatgttcca
gcgtcttcctctacagccacagcttccacacagacccagcactctgggatgtccccatct
ccaagcaacagttatgatacctccccacaaccttgcactaccaatcaaaatgggagggag
agtaacgagaggttgtctgccttcaatgggaagatgtcgcccacacggtaccctctggca
aatagcatggctcaaaggtcatatagctttgaagcctcggaggaggacttggatgtagat
gataaagtagaagaattgatgaggagggacagcagcgtgataaaagaggaaatcaaagcc
ttcctggccaaccggaggatttctcaagcagttgttgcacaggttacaggcatcagtcag
agtcggatctcccactggctgttgcaacagggatcagacctgagtgaacaaaagaaaagg
gccttttaccgatggtaccagcttgagaaatcaaatccaggggctacattaagcatgaga
ccagcccctcttccagttgaagagccagaatggagacagacgcctccgccagtcacagct
acctctgggactttccgcttgcgacgtggcagtcggtttacctggagaaaggaatgtttg
gctgtcatggaaagctacttcaatgagaatcaatatcctgatgaggccaagagagaagaa
attgcaaatgcctgtaatgcagttattcaaaagccaggaaagaagctgtcagatctggag
cgagttacctccctcaaagtgtacaattggtttgccaatagaaggaaggaaatcaagcgg
cgagccaatattgaagcagcaatcctggagagtcatgggatagatgtacaaagccccgga
ggccactccaacagtgacgacgtagacggaaatgactattcagagcaggagtcttggcaa
gtacgcaatggggaggaggagggaagatgtacagagggaggcagagaagcagagaagtta
gaagaagacaggaggatctgctcaaaacaagatgacaacactagccatagcgaccaccaa
gaccctatctcactagccgtggagatggcagcggtaaatcacaccattctggcgttggcc
cggcaaggaaccagcgagatcaaaacagaggccctggatgatgactga
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