Thamnophis sirtalis (common garter snake): 106542111
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Entry
106542111 CDS
T06107
Symbol
FOCAD
Name
(RefSeq) focadhesin
KO
K27498
focadhesin
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106542111 (FOCAD)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106542111 (FOCAD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Focadhesin
DUF3730
HEAT
Motif
Other DBs
NCBI-GeneID:
106542111
NCBI-ProteinID:
XP_013913234
UniProt:
A0A6I9XCC2
LinkDB
All DBs
Position
Unknown
AA seq
1503 aa
AA seq
DB search
MSEEIRKRLDFPNTLIQSQAVGHLIAAVLKENVLSNKISQSSNQTPALNLLWEKSCSDNM
MVRTTCCEAVVKLVKQDHAEFGYILNTALSLIPSARNVQGLIKIIVKLLQMQALKTSQSE
EQQQLDLYAIRNSPHPLIIIVENRPDCWPFLLQHMTTFFQQCPKGAERACVNIMRPFLRY
LYCEPYQLREHAELRMSLLRVLLQPYGPFNKEEPPGLECHLLQLFCDLVPYYQVKDALQI
TEALLFLEGLFRSLLRYPSFWKKQLCHLCLQLLVFCEVSLQATGECSSLIRLMEENVELL
KEGFPFQMTIIGLGVLLLQIPASQQKPILNLAIKLLSGSETKMTPLMAVILVMPALQILS
STTGQDNMIEENDSTTRQQLAINLLEIVQQEELKEQPLVSWEHYFPINSTYGSLHVTWQL
LWLLRDKTAMLDWLSSIKSMLPIATQVSVHVVLLVAYLLIQENGDNLHSVLDATIEIAKV
DSSQVPNLIPVLMFKLGRPLEATLCRDILYTLPALGVHKVCVAQILRVLQVLGNTPKLQA
VTLRLMTCLWEKQDRVYPELQRFMAMSDMASLSVSKDTQWEKVIAKAASIRDICKQRPYQ
HGADMLAAISKVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLNCDTRP
FILKTLNELFSLVPSLMVNSSEYEKFKAQVVSFLWSHTQSKDSLVAISAYKSLSEFHPEE
YTILHLPEQKSYSGENTASAIARSCAATSLSLLVPVFIVSYKERVEEVLNLLIAMLPGKP
NADESQAVQIHMSLALGMFISRLCEEKVSDVADKQMNLLLMKSLEALEDCCFDTSLEYNT
GCILGVGLVLSLMSHSNLTDSEAHISTSLRKLCKYLDDAEDQSRTLQEILAYTIACVCVS
AFSTRIVEATEAEDVMDKLQKLTEMNQQTPGFALALGSLVHGLSICGHGKADVLSNKLFP
AWMKTVLAEGAPTMQRLAAVNGLVSLVGSESTMIQLKSEAIQSSHFQSKLNEVIRTLTQV
ISFSGVIGLQVNAAWMLGHLYLSNVSATRSRTSVPSDFSYLPEKSFLRATIDFIIEGGKK
GPEQVHPSFLKAAMAPIALIGGSYQYPPLNWASILAPLLRLDFGEEIQQLCIELAVTQAQ
SSQNAAMILGMWVAPPLVYSLSIQAKRYLFASLPLWMKYVAEDKQQIFTEVFMVQHFETK
KQSKNPDLCWNILQGLSQAMKLPSPTQHSWSCFCKAAEKIFELLPDEIWQNDVKMYILAA
KCLSEMVDTEVERITEVSKNNLEKVAFVRVYLVSQGRFPLLRWNDVISVAAGCQQKETIV
WMLLHSFYHARILSHENTGVLKRMEWLLEFMGYIKKVSLNTASMQNVSPQEAVSFLLWIF
AACVVAWADHALPMLLGLSADWSAWQCETIDRVLARGLGKRPVDTLAVKEILTLLPGSLQ
ILLTKEPWKEQTPKFIDWLFSLMENANEILTQSSRDLLKASLLALRSLPEFKKKAVWTKA
YGW
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagaaatcagaaaaaggcttgattttcctaacacgcttattcagtcacaggct
gtgggccatcttattgctgcagtgctgaaagaaaatgttttatctaacaagatcagccag
tccagtaaccagaccccagcgttaaatttgctctgggaaaagtcctgcagtgacaatatg
atggtccggacaacctgctgtgaggctgtggtgaagcttgtcaaacaagatcatgcagag
tttggctacattcttaacacagcactcagcctcattccttcagccaggaatgtccagggc
ttgataaaaatcattgtaaagctattacagatgcaagccttgaagacatcacaaagtgaa
gaacagcaacagcttgacttatatgcaattagaaactctcctcaccctctaattattata
gttgaaaacagacctgattgctggccattccttcttcaacatatgaccacatttttccag
caatgtccaaaaggggcagaacgtgcatgtgtcaatataatgaggccatttctaaggtac
ctatattgtgaaccttaccagttgcgggagcatgcagaattacggatgagcctgcttaga
gtcttgcttcagccatatggacctttcaacaaagaggagccccctggccttgaatgccat
ctccttcaattgttttgtgacctagtcccgtattatcaggtaaaagacgctctacagatc
acggaagcattgctttttttggagggattatttcggagtctgctgcgttaccctagtttt
tggaagaagcaattgtgtcacctttgtctgcagcttctggttttctgtgaggttagcctg
caggccacaggggaatgttcatctttaattcgcttaatggaggaaaatgttgagcttctg
aaagagggttttccatttcagatgaccatcattggattaggcgtgctcctactgcagatt
ccagctagtcagcaaaagcctattttaaatctagccatcaagcttctatcaggttcggaa
accaagatgactccattgatggctgtcatcttagtgatgcctgcattgcaaatattatca
tctaccactggtcaggacaacatgattgaggagaatgatagcacgactaggcagcaatta
gccattaatcttctagagattgtacagcaggaagagcttaaggagcagcccttggtctct
tgggagcattacttccccataaatagtacctatggttcattgcatgtcacttggcaactc
ctttggcttttgagagacaagaccgctatgcttgattggttgtcttctattaaatcaatg
cttcctattgcaacacaagtctctgtccatgttgttctcctggtagcgtatctcctcatt
caagagaatggggataatcttcatagtgtgctggatgctaccatagaaattgcaaaggtg
gattcatctcaggtgccaaatctgattccagttctgatgtttaaattgggaagaccactg
gaggccacactctgccgggacatcttgtataccttacctgctttgggagttcataaggtc
tgcgttgcccagattttacgtgtgctgcaggtgttaggaaacacaccgaaacttcaagct
gttacgttacgtctgatgacatgtttatgggaaaaacaggatcgagtttatccagaactt
cagagattcatggcaatgtctgatatggcttcattatctgttagtaaagatactcagtgg
gagaaggtgattgccaaagctgcttctatcagagatatatgcaagcaaagaccttaccaa
catggggcagatatgctggctgcaatttctaaggtactgaatgaatgcacaaaacccgat
caagccacacctgctgccttagtcttacaaggacttcatgcactttgtcaagctgaggtt
gtttgcattcgttctacatggaatgcactctcaccaaaactgaactgtgatacccggcca
tttattttaaaaacactcaatgaactgttctctcttgtcccttcgttaatggtaaattcg
agtgaatatgagaagtttaaagctcaagttgtcagtttcctatggagccacacacaaagc
aaggattctcttgtagctatctctgcatataaatctctctctgaatttcatcctgaagaa
tacaccatcctccatcttcctgaacagaaatcctactctggtgaaaataccgcaagtgct
attgctcgttcctgtgcagcaacctctttgtctctcttggtgccggtttttattgtatcc
tacaaggaaagggttgaggaagtcctgaatttactgattgccatgttacctgggaaacca
aatgcagatgagtctcaggctgttcaaatccacatgagccttgcattggggatgtttatt
tcacggttatgtgaagagaaagtcagtgatgtagctgacaaacaaatgaatctcctattg
atgaagtccctggaggcattagaagattgctgcttcgacacaagtcttgagtacaacact
ggatgtatcttgggggtaggacttgttctgtcactgatgagtcacagcaacttgacagat
tctgaagctcacatctctacctctctgcgtaaactttgcaagtacttggatgatgcagaa
gaccaaagccgaacattacaggaaatccttgcctacacaattgcctgtgtctgtgtttct
gctttcagtactaggattgttgaggctacagaggctgaagatgttatggacaagctgcag
aaattaacagaaatgaatcagcagacaccaggttttgccttagccttggggagccttgtt
catggattatctatatgcggacatggaaaagcagacgttctcagcaataagctatttcct
gcctggatgaaaactgtacttgctgagggagctcctacaatgcaaagactagcagcggtc
aatggcttggtctctctagtgggttctgaaagtaccatgatacagctgaaatcagaagct
atccaatcttctcactttcaaagcaaacttaatgaagtcatccgaaccctgactcaggta
atcagcttttctggggtgataggccttcaggtaaatgctgcatggatgttaggacatttg
tacctttctaatgtgtctgcaacccgtagtcgaacatctgttccttctgactttagctac
ctccctgagaaaagtttccttagagcaaccattgattttattatagaaggcggaaagaaa
gggcctgaacaagtccatccaagcttcttaaaggcagccatggcacccattgcattgatt
ggagggagctatcagtatccccctttgaactgggcatcaattctcgctcctctgctgcgg
ctagattttggagaagaaatacagcagttgtgtattgaactagctgtgacccaggctcaa
tcatctcagaatgcggcaatgattttaggcatgtgggtggcaccacctctggtctacagt
ctaagtatacaagccaagagatacctttttgcttccttacctctgtggatgaaatatgta
gccgaagacaaacagcagatcttcactgaagtgtttatggtgcagcatttcgagacaaag
aaacagtcaaaaaacccagacctttgctggaatattttgcaaggactcagccaagctatg
aaattgcctagcccaactcagcacagctggagttgtttttgcaaggctgctgagaagata
tttgagcttttgccagatgagatttggcagaatgatgtaaagatgtatatacttgcagca
aaatgtctctcagaaatggttgatacagaagttgaacggattacagaagtttcaaagaac
aatttggaaaaggttgcatttgtcagagtttatttagtttctcaaggcagatttcctttg
ctgagatggaacgatgtgattagtgttgcggctgggtgccagcagaaagaaaccattgtc
tggatgctgctgcacagcttttatcatgcacgaatcctgagccatgaaaacactggagtc
ttaaaacgaatggagtggctcttggaattcatgggatatattaaaaaagtttccttaaat
acggcctctatgcaaaatgtttctccccaagaggctgtcagcttcctgttgtggattttc
gccgcttgtgtggttgcctgggctgatcatgccttgccaatgctacttggccttagtgca
gactggtctgcctggcagtgtgaaacaatagacagagtccttgcacgtggcttaggcaag
cgtccagtggatactttggcagtcaaagagatactcactcttcttccaggtagcttgcaa
attctgttgaccaaagagccttggaaagagcaaacaccaaagtttattgactggctgttt
agcctaatggagaatgctaatgaaatactcactcaatcttccagagatcttttgaaagct
tctttattggccctgagatctcttccagagtttaagaagaaagcagtatggacaaaagct
tatggctggtag
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integrated database retrieval system
