Thamnophis sirtalis (common garter snake): 106542182
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Entry
106542182 CDS
T06107
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta isoform X1
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tsr01001
]
106542182 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tsr04121
]
106542182 (TRIM28)
Enzymes [BR:
tsr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106542182 (TRIM28)
Protein kinases [BR:
tsr01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
106542182 (TRIM28)
Ubiquitin system [BR:
tsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
106542182 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
zf-RING_5
zf-RING_UBOX
PHD
zf-RING_2
zf-C3HC4
zf-B_box_Trim66
Prok-RING_4
YaaC
Motif
Other DBs
NCBI-GeneID:
106542182
NCBI-ProteinID:
XP_013913311
UniProt:
A0A6I9XGR6
LinkDB
All DBs
Position
Unknown
AA seq
843 aa
AA seq
DB search
MSASGTATVSAPAEAGGGGVAGDKQRSSSSAPLNVEGIDLLEKCGVCRERLRSERDPRLL
PCLHTVCKECIKVEAVSGGNNKDGQVVDCPVCKHQCYLKDIVENYFLRDGDTEALGDARD
ANQCCTSCEDNAPATSFCVECQEPLCETCVEAHQRVKYTKDHTVRSTGSSKSQAREKTIY
CSVHKLEPLVLFCDTCDTLTCRDCQLNAHKDHQYQFLDDAVKNQRKMLASLVKRLGDKNA
NLQKSTKEVRTSIRQVADVQKRVQVDVKMSILQIMKELNKRAKVLVSEAQKVTEGQQEKL
ERQHWAMTKLQRHQEHILRFANWALESDNNTALLLSKKLIYFQLHRALKMIVDPVEPHGD
MKFQWDLNAWIKSAETFGQIVSERSGLPVTANAQTPQQRTNTASAASGVAVRQGSVPPSQ
GVQQMSLQTSIMNKGALLQPVLPSNSQRQAIPDCYINDASASSAGQPMDIGDGFGVEGSY
SGEVSGMKRTRVQDGETGLVRKVPRVSLERLDVDLTSDNQPPVFKVFPGNSREDYNLIVI
EQGGQGVAGLPNAVKEEQMEAAIEHPTSAVDTKDTKPVILPQDALLPEGSAAPRLISPTG
STSSAMEMQSVHSHDGTANGEENACCRICLKTGAVVMCDSCRKCYHLDCHLPALQEIPGQ
DWKCLLCTDPVIAIGEDGTELAAVFKDGEAKMLSSVDQKRCERVLLELLCSEPCRPLHRL
SNAPEGQNTIDLTLIRAKLQRKLSPPYASPDEFADDVWKMFRQFNKLTEDKEDVQSIIVL
QRFFEAKLSAAFGDRKFSALREPINIDEPQKENTLASRVSPVTDPGEAMSSKADSSGDEG
MAS
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcctctgggactgcaacggtctctgctccagcggaagccggcggaggcggtgtc
gccggggacaagcaacgctcctcctcttctgctccgctcaacgtggaaggcatcgacttg
ctggaaaaatgcggcgtgtgccgagagcggctccgctccgagcgcgatccgcggctcctt
ccttgcctccacaccgtctgcaaggagtgcatcaaagtcgaggccgtctcgggcggcaac
aacaaggacgggcaagtggttgactgcccagtttgcaagcatcagtgttatctaaaagac
attgtggagaattactttttgagggatggtgacactgaagctcttggtgatgctagagat
gctaaccagtgttgcactagctgtgaagataatgcccctgccaccagcttttgtgtggag
tgccaagagcccctgtgtgagacatgtgtggaggcccatcagagagtgaagtacactaag
gaccatacagtccgatccacaggctcctccaaatcacaggcaagggagaagactatctac
tgctctgtccacaaactcgagcctcttgttctcttctgtgacacctgtgacaccctgaca
tgccgggactgtcagctgaatgctcacaaagatcaccagtaccagttcttggacgatgca
gtcaagaatcaacgcaagatgctggcttcattggtcaagcgccttggggataaaaacgct
aatctccagaaatcaaccaaggaagtgcgcacctcgatccggcaggtggcagatgtgcag
aaacgtgtgcaggtagatgtgaagatgtctatcttgcaaattatgaaggagctcaataaa
cgtgctaaggtgctggttagtgaagcacagaaagtcactgaaggccaacaagagaaactg
gaaaggcagcattgggcgatgacgaagctgcagcgtcaccaagaacatatcctgcgcttt
gctaattgggccttggagagtgacaacaacactgcattgctgctctcaaagaaactgatt
tattttcaactgcaccgggctctaaagatgattgtggatccagtggaacctcatggagac
atgaagttccagtgggatttaaatgcctggatcaagagtgcagagacttttggtcaaata
gtgtcagaacggagtggtttgccagtgactgccaatgcccaaacaccccaacagcggact
aacactgcttctgctgcatcaggagtggcggtcagacaaggttctgtccccccttctcag
ggagtccaacagatgtctctgcagacaagcataatgaataagggagctttgcttcagcct
gtgctgccttccaacagccagcggcaggccatccccgactgctatatcaatgatgccagt
gcctcttctgctggacagccaatggacattggtgacggctttggtgtagaaggatcatat
tctggtgaagtatctggaatgaaaagaacccgtgtccaggatggagaaactggtcttgtg
cggaaagtgccccgggttagtctggagcggctggatgtggatttgacatcagataaccag
ccacctgtcttcaaagtctttccgggcaattcccgtgaagattacaatctcattgtgatt
gaacaaggaggtcaaggtgtagcagggctaccaaatgcagtgaaggaggagcaaatggag
gcagctatagagcatcctacttctgctgtagatactaaagacaccaagccagttatcttg
ccccaggatgccctccttccagaaggctctgcagccccccggctgatctcccccactggc
agcaccagctctgccatggaaatgcagtctgttcatagccatgatggcacagctaatggg
gaggaaaatgcttgctgcaggatctgcctgaaaactggtgctgtagtcatgtgtgatagt
tgcagaaagtgctaccacttggattgtcacctgcctgcccttcaggaaatccctggccag
gattggaaatgcctactgtgtactgatccagtaatagccattggagaagatggaactgaa
ttggctgcagtcttcaaagatggagaagcaaaaatgctgtcaagtgttgaccagaagaga
tgtgaacgagttctccttgagcttctttgttctgaaccatgcaggcctcttcacaggctt
tccaatgctccagaggggcagaacacaattgacttgactttgataagagcaaagttacag
cggaaactgtcaccaccctatgcatctcctgatgaatttgcagatgacgtttggaagatg
ttcaggcagtttaacaagctgactgaggataaggaggatgttcagtccatcattgttctg
caacgcttctttgaagccaaactgagtgctgcctttggtgaccggaaattttcagccctg
cgtgagccaatcaacattgatgaaccacaaaaagaaaacacacttgcttcccgtgtttcc
ccggtcactgatccgggtgaggccatgtcttctaaggctgatagcagtggggatgaggga
atggcaagctaa
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