Thamnophis sirtalis (common garter snake): 106542204
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Entry
106542204 CDS
T06107
Name
(RefSeq) B-cadherin-like
KO
K06796
cadherin 3, type 1, P-cadherin
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
106542204
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tsr04515
]
106542204
Cell adhesion molecules [BR:
tsr04515
]
Cadherins
Major cadherins
106542204
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_4
TM_ErbB1
DUF3426
Motif
Other DBs
NCBI-GeneID:
106542204
NCBI-ProteinID:
XP_013913340
UniProt:
A0A6I9Y5Q0
LinkDB
All DBs
Position
Unknown
AA seq
599 aa
AA seq
DB search
MQVTATDADDAIETYNGVVAYSILSQAPQEPHLQMFAINRATGTISVIASGLDRERVGEY
TLILQAADLDGLGLTTTASAVIEITDANDNVPEFTESMYSAEVAENMEGVEVVRLAVTDR
DERHSPAWHAVYSIVQGNGGELFSISTDPKTNEGILTTAKALDFETGQQFVLQVAVANEV
PFAVKLPTSTATVTISVTDANEAPVFAPPALKVKVSEDIPVGQKIATYAAQDPDTAQSQK
IRYLLESDPAQWLDVHPETGIITAKAPLDRESPLVQNDTYVAIVLAVDDGSPPATGTGTL
LLTLLDVNDHGPEPDRRKFTVCNHNPSPQLLRISDKDLPPHTSPFQAELVHNSEENWSVE
MDSEGETAILKLLKPLKRETYDVYLRLLDQQGKSHLTVLRATVCECEGEVDECLEGPMPI
VGAPIILAVLGAVLALLILLLLLLLFARRRKVAKEPLLLPEDDTRDNIFYYGEEGGGEED
QDYDLSQLHRGLDPRPEVLLRNDVVPAPLPAPQYRPRPANPDEIGNFICENLKAADLDPT
APPYDSLLVFDYEGGGSEGGSLSSLNSSASDQDQDYDYLHEWGSRFQKLADLYGGGVAD
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtcacggccactgatgccgatgatgccattgagacctacaatggggtcgttgcg
tactccatcctgagccaagcgccccaggagccccatctgcagatgtttgccatcaaccga
gcaacagggaccatcagcgtgatcgccagcggcctggaccgagagcgagtgggggaatac
accttgatcctgcaggcagcagacctggatgggctgggcttgaccaccacagcatcggca
gtgatagaaattacagatgccaacgacaacgtgcctgaattcacggagtccatgtattcg
gcagaggtggcggagaacatggagggtgtggaggtggtgaggctggctgtgaccgacagg
gacgagcgccactctcccgcctggcacgccgtgtacagcatcgttcagggcaacggcgga
gagttgttttccatctcgacggatccaaagaccaacgaaggaatcctgacaacagcaaaa
gcgctggactttgagacgggacagcagttcgttctgcaggtggcagtggccaacgaggtg
ccctttgccgtgaagctgcccacctcgacagccaccgtgaccatcagcgtgacggatgcc
aacgaggcccccgtctttgcacccccggccttgaaggtgaaggtctcggaggacatcccg
gtgggacagaaaattgccacctacgcggcacaagacccagacactgcgcagtcccagaaa
atcaggtacttgctggagagcgaccctgcccagtggctggatgtccacccggaaaccggc
atcatcactgccaaggcgcccctggaccgggagtctcccttggtccagaacgacacctac
gtggctattgtgctggcggtggacgatggaagccccccagccacagggacggggacgctg
ctgctgaccctcctggacgtgaacgaccacggcccagagcccgaccggcggaagttcacc
gtgtgtaaccacaatccaagcccacaactgctgcgcatctcggacaaggacctcccgccc
cacacctcccccttccaggcggagctggtccacaactcggaggagaactggtcggtcgag
atggacagcgaaggggagacggccatcctgaagctgctgaagcccttgaagcgagagacc
tacgacgtctacctgcggctcctggaccagcagggcaagtcgcacctgaccgtcctcagg
gccaccgtctgcgagtgcgagggggaggtggacgagtgtctggaggggccgatgcccatc
gtcggggcgcccatcatccttgccgtcttgggggccgtcttggccctcctgatcctgctg
ctgctgctgctgctcttcgcgaggaggaggaaggtggctaaggagccgctgctgctgccg
gaggatgacacccgggacaacatcttctactatggcgaggaaggagggggcgaggaggac
caggactatgacctcagccagctgcacaggggcctggacccccgcccagaggtcctcctg
cggaatgacgtggtgccggcccctttgccggccccccagtatcgcccccgccctgcaaac
cctgatgagatcggcaacttcatctgtgagaacctgaaggctgccgacctggaccccaca
gcgcccccctacgactccctgctggtcttcgactatgagggcgggggctccgaggggggc
tccctcagctccctcaactcctcggcctccgaccaggaccaggactacgactacctgcac
gagtggggcagccgcttccagaaactggcagacctgtatgggggaggcgtggccgactag
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