Thamnophis sirtalis (common garter snake): 106542388
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Entry
106542388 CDS
T06107
Symbol
NFRKB
Name
(RefSeq) nuclear factor related to kappa-B-binding protein
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106542388 (NFRKB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsr03036
]
106542388 (NFRKB)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
106542388 (NFRKB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NFRKB_winged
Motif
Other DBs
NCBI-GeneID:
106542388
NCBI-ProteinID:
XP_013913576
UniProt:
A0A6I9XHL1
LinkDB
All DBs
Position
Unknown
AA seq
1332 aa
AA seq
DB search
MDSLDHMLTDPLELGPTGEGNGTQIMEDCMLGSIRISLPEDLLEDPEIFFEVVSLSTWKD
VLVDSQREHLKKFLPRFPENNPDFQNNLILSLFNGENFRFGNPLHIAQKLFRDGHFNPEV
VKYRQLCFKSQYKRYLSSQQQYFYRLLKQILASRNHLLELAKKGGSDLAVKRKYSAAAYA
AEERDRRTHRRYLKILREVKEECGDTTLSSDEEDLSSWIPTSPAHCSSPALPLRVIPTLS
TQDMKTADKLDFGENSLKMMLKKHHEKRKRQPNHPDLMTGDLTLTDIMTRVNAGRKGSLA
ALFDLAVLKKKVKEKEEKKKKKLKVIKSEAEDFSEALGNSEGIPPVSQNPSPIPPLWDPP
SLPSVKEEPLEDIKPCLGVNEISSSFFALLLEILLLEGPACLSVLEDKVMDWQSSPASTL
NSWFSFAPNWSELVLPALQYLTGVSRDASSSFSPFVEFKEKTQHWKLIGSSQDHEKELAA
LFQLWLETKDQVFFKDNEDSSDATTPVPRVRTDYIVRPSTGEEKRVFQEQERYRYSQPHK
AFTFCMHGFESVVGPVKGVFDKETSLNKPREHSLLRSDRPAYVTILSLVRDAAARLPNGE
GTRAEICELLKDSQFLAPDVTSAQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRDR
SEEEFERIHQAQAAAAKAKKALQQKPKPPTKTKSSTKESSSKGVTTGISELSQLSVSDSS
MPPTPVTPVTPAALPLPAMPISPPPVSVVSKSLSCVATEPAKSSQSILLVSSPTMPQLGT
LLSTTQSAQAQPGSQLSTPRAASHTTSSGLPQVRVVAAQTSLPPLSQPAQVVAQQQPSLA
SVPQIRVPSTSVQSKVFSQAVMTVPVKAQTSPVQVQRTTVAVTGAANVTGTGIATPTPVP
KPANSSPNTAVANPSTTPLSSSASLSSSSSSTTVLQNVAGQNIIKQVAITGQLGMKSQTG
SSLPLTTSNFRIQGKDVLRLPPSSITTDAKGQTVLRITPDMMATLAKSQVTTVKLTQDLF
STAAAAGSNPAGKGICATLRVTSSPIQSSDSPAKTSTPNTSASPGPAGPTVVKVTPELKT
VESAGSAFRLMPALGMSVADHKGKAITTIASSEAKPAATIRIVQGMGVMPPKPGQTITVA
THAKHMASSSSVSIPGTGHTSTVSLPTMTASVSKAVAVVSAAGTPISIGPGTSTVRQVPV
STTVVSTSQPGKLPTRITVPLSVISQPVKGKNVVTAPIIKGNLGANISGLGRNIILTTMP
AGTKLIAGNKPVSFLTAQQLQQLQQQGQAAQVRIQTVPASHLQSGTVSGATKAVSTVVVT
AAPSPKQTQDQP
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggactcgctggatcatatgctcactgatccattggaactggggccaactggggaagga
aatggcacccaaattatggaggattgcatgctgggatccatacgcattagcctacctgaa
gatcttttggaagatcctgagatcttttttgaagttgtcagtctttcaacctggaaggat
gtgttggtggattcacagcgagaacatttaaaaaagtttttgccccgcttcccggaaaac
aatcccgatttccagaataatcttatcctgtccctatttaatggagagaacttccgattt
ggaaacccacttcatattgctcaaaaactcttccgggatggacatttcaatcctgaagta
gtgaagtacagacagctttgcttcaagtcccagtataagcgctacctcagttcccagcag
cagtatttttatcgattgctgaaacagattcttgcctcccggaatcatctgttagaactc
gctaagaaggggggatcggatctggctgtcaagagaaaatactcagcagctgcttatgct
gctgaagaacgagatagacggacgcatcggcgataccttaaaatcctcagggaagttaaa
gaggaatgtggagacaccaccttatcctctgatgaagaagatttgagttcttggattcca
acctctccagcccactgttcaagtcctgctcttcctctcagagtgatacccactttatca
acccaagacatgaaaacagcagataaattggatttcggtgagaatagcttgaagatgatg
ctgaagaaacaccatgaaaagcgcaagcgccaaccaaatcaccctgatctgatgacagga
gacctgaccctgactgacatcatgacacgtgtgaatgctggcaggaaaggatctttggca
gccttgtttgaccttgcagtcctcaaaaagaaagtgaaggaaaaagaggagaaaaagaaa
aagaagctaaaagtgattaaatccgaggctgaagatttctctgaagctcttggcaactct
gaagggatccctcctgtttctcaaaacccctcccccattcctcccctgtgggatccccca
tccctcccatctgttaaagaagagcctcttgaagacatcaagccttgtcttggagtgaat
gaaatttcctccagcttctttgctctgcttctcgagatcctgttgctagagggccctgct
tgtctctcagtgctggaagataaagtcatggactggcaatcttcccctgccagcacatta
aacagctggttctcctttgcccccaactggtcagaactggttttacctgccttgcaatat
ctcactggagtcagcagagatgcttcttccagtttttctccttttgtggaattcaaggaa
aaaactcagcattggaaacttataggctcttcccaggatcatgagaaggagctagcagct
ctcttccaactttggttggagactaaagaccaagttttcttcaaggacaacgaagatagc
tcagatgcaaccacgccagttccacgagtaaggacagactacatagtccgacctagcact
ggagaagaaaaacgcgttttccaagaacaggaacggtatcgatacagccaacctcacaaa
gcttttaccttctgtatgcacggctttgagtcggtggtgggccccgtgaaaggagttttt
gataaggaaacttctctaaacaaaccccgggaacattcgctattgcgatcagatagacct
gcatacgtcaccatattgtctcttgttcgggatgcagctgcccgtcttccaaatggagag
ggaactcgtgctgaaatttgcgagcttctgaaggactcacagttccttgctcctgatgtc
acaagtgctcaggttaacactgtggtgagtggtgctttagatcggttgcactatgagaaa
gacccctgtgtaaaatacgatattggtcgcaaactatggatatatctacaccgagacagg
agcgaagaggagtttgagcggattcatcaggcccaggcagctgcagcaaaggccaagaag
gctcttcagcagaagccaaagccgcctacaaagacaaaatccagcaccaaggagagttct
tcgaaaggggtgaccaccggcatctctgagctcagccagctgagcgttagcgattccagc
atgccgccaaccccagttactccagtgacgcccgctgcactccctttgccagcaatgcct
atttcaccccctcccgtctctgtggttagcaagagtttgtcttgcgttgcaacagagcca
gcaaaatccagccagagcatccttttggtatcttctcccaccatgccccagcttgggacg
ttgctctcaaccacacagagcgctcaggctcagcctggatctcagctatcaaccccacgg
gcggctagccacaccacttcctcaggccttcctcaagtccgagtagttgcagctcagact
agccttccccctttgtctcagccggcccaggtggtagcacaacagcagccatcactagca
tccgtccctcagatccgggttccttccacttctgtgcaaagcaaagtattctctcaggct
gtcatgactgttccagtgaaagctcagaccagcccagtccaagtccagaggacaacggtt
gctgtaactggagcagccaatgtcactggaacagggattgcaacgcctacacctgtcccc
aagccagcaaatagttctccgaacactgcagtggccaacccttccaccactccgttgtct
tcctctgcctctttatcatcttcttcctcatccaccactgtcctccagaacgttgctggc
caaaatatcattaaacaggtggctattaccggacagctaggcatgaagagccagactggg
agcagcctcccacttaccacatccaacttccgtattcaaggcaaggatgtcctgcgtctt
cctccatcctccatcaccacagatgccaaggggcaaacagtcctccgcatcactccggac
atgatggccaccttggccaagtctcaagtcactactgtcaaactcactcaagacctcttc
agcacagccgccgccgctggaagcaaccctgcagggaagggcatctgcgccactctgcgt
gtgacgtcaagccccatccaatcctcggactctcctgccaagaccagcacacccaacacc
tctgcttcacctggtcctgctggaccaacagtggtcaaagtgacgccagagttgaaaacg
gtggagtctgctggttctgctttccgactgatgcctgctttgggcatgtccgtggcggac
cacaagggcaaggccataaccacgatagcgtcctctgaagccaagccagcggccaccata
aggattgtacagggcatgggagtgatgccacccaaacctggccagacaattacagtagcc
actcatgccaagcatatggcctcttcttcttccgtcagcatccctgggaccggccatacc
tctacggtttccctgcccaccatgacggcttctgtctccaaggctgtcgccgtggtgtca
gcggcgggaacacccatatccataggaccaggaacctccactgtgcgacaggttcctgtc
agcaccacagtggtttccacctcccagccagggaaattgcctacccgaatcaccgtgccc
ctctcggtcatcagccagcctgtgaagggcaagaatgttgtgactgcgcccatcatcaaa
ggcaacctcggggccaacattagcgggttggggcggaatatcatccttaccactatgcca
gctggaaccaaactgattgctgggaacaaacccgtgagcttcctgactgcccagcagttg
caacagctgcagcaacaaggacaggcggcccaggtgcggattcagactgtcccagcttcc
catctccagtcgggaacagtctccggcgctacaaaagcagtgtccactgtagttgtcaca
gcagccccatctccaaaacagacccaggatcagccgtga
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