Thamnophis sirtalis (common garter snake): 106542407
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Entry
106542407 CDS
T06107
Name
(RefSeq) vacuolar protein sorting-associated protein 13C-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106542407
Membrane trafficking [BR:
tsr04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
106542407
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_M
VPS13_N
VPS13_VAB
VPS13_C
Trypco2
WWE
Motif
Other DBs
NCBI-GeneID:
106542407
NCBI-ProteinID:
XP_013913637
UniProt:
A0A6I9XI92
LinkDB
All DBs
Position
Unknown
AA seq
2574 aa
AA seq
DB search
MTGLRQRDVVPSLVASIGAAESSLLEIQFETNPEGSVADQSLFLQSQPVEIIYDARTINA
LVEFFQTNRGMDLERLTTATLSKLEEIKERTSTGLMHIIETRKVLDLRINLKPSYLLIPQ
TGFHHEKSNLLILDLGTFQLKSISQGHHQNSSSSLEEIMDKAYDRFDVEIKNVQLLFGRS
GEDWKKARSEPASLLHILRPMDIRVQVAKSMVEKDVRMAKFKVSGELPLVHLRISDQKIK
GVLELIDSIPLPQKSSVSVSTAKAPAIPVVSEGRKDFLGATRLLEELEPESDDEYFDFDD
YPQQPEKVVPPTKKQLKNEIETVQEELTDLQLKFEIKEVILELTKQLQREETILVFNVQQ
LGMEATARTFDLKAETYLRKISLNYYEIQGKRQQIHLISSSDVSGLDLLKVEYIKADKNG
PKFQTVFDNTEQRMEVTFSSLQVVLHTQALLSALGYLMAVVPAREKQPPALQRREETQRT
ESTWKEGKVKEPVPSAGAPKSSLSEEAQKDDKTSLLLNFEINKVLVTLTKQVEKQSFPLY
RLTNFLSNFQIATEALSAATVQAAEKAATSMRDFAQRSFRLAMDINLKAPVIVVPQSSVS
CNAVVFDLGLIKIQNRFSLVPAEDCSLPPIVDKMEVHLTQLKLSRTVLQRGASQPDIQIL
RPINLDLSVNRNLAGMWYHKIPLVEVQGYLDTISPGGLHQAYETSIYYSKGDPLNIISSS
DESGKHLLKMEYVKADVDGPHFDTVYNRTKQLLNVSFSSLDLILHTEALLSIMNFFTSAS
SGITPAEKGADVERPSEDPKTAVAKSGIGGLISLFIEPRWHSLSTRSPFICRAVVGSSPQ
PEIEILQPVNLQLSVQRNLASDWYLQIPGISIQGDLKAMLLSLSQDDLTLLMNILLENLS
EAAADPKATSSTLPDVQKPKKPEAAAVAGLGEGTPEIPAEEVLGGDQLVKSVAVMFHFNF
ESLSLVLYNADKNQKPQLHNSHLRLGELGLHFMRSSGQMFSDGSLDVSTKMETCTLDDLR
EGVEKATARMLARRDGKAESVMIDIRYKQDKNGADIVAVLDQLYLCASMEFLLTVADFFI
QSMPAAGAAEKPAQLALKASSQGKPRPEKAAAAPSNMSVVAHILDPEIVFVANLTKADAP
ALAASFQGSFMLSGGSEAKHMTARVLDLRVLACPFLRGAAKQNVTTVVQPCSLIVEATMD
TSGVQSVDVNMETLVVKVSPIILNTVMTILAAMKRQAKEEESGGTPCNPVDLWSVKSVDE
CQSWFLGVDMATEATEALVASEQREKKEHFVVVVKSVQVTLECGLGHRTVPLLLAESAFS
GTVKNWSSLMSAQADVTLEKPQLHNSHLRLGELGLHFMRSSGQMFSDGSLDVSTKMETCT
LDDLREGVEKATARMLARRDGKAESVMIDIRYKQDKNGADIVAVLDQLYLCASMEFLLTV
ADFFIQSMPAAGAAEKPAQLALKASSQGKPRPEKETKGKGQHERKLFWCKTGPEGYSEVS
GVPIAKPGRRLHAVRAPQSSSSNSVVVQIDAEEGNKVITLRSPLQIKNHFSVPFIIYKFV
KDIKQLRPLGVSLPEEEFHVPLDSYRCQLFVQPTGVLKGQYEPSTTYISWQEELHRSSEV
TCMLQCPAADARFLPLRLKATAVPDELNFIATHKENWEPAYIIHFYPTLTLQNLLPYSLQ
YILEGTAKAHELHEGSAADVLHSRISGEVMELIVVKYQGRDWSGRFRVHDALPEFFPVCF
TSHSAEGATLDVYLHVKKSSTHTTLSVYSPYWIINKTSRILQYRAEDVHVKHPADFRDTV
LFSFKKKNIFSKNKIQLCISTSTWSNGFSLDTVGNSGCVKCPAGNMDFLCVAFWPESPSG
KLCIRASGSEQFSKPFFYNRQDNGTLLSLEKMNTGVLVNVSLAEHSIVINVSDYYEGAAP
ALVINQTSWATLKYQQSGLQEVMELKPKEVRLFVWEDPTGMRKLSWNYAQNTGELDLLKD
ECGQFPYNANTPIHWVSFLDGRQRVLLFTEDVALVSKARQAEEMEQPDQEINIALQGLGL
SLVNNTRKQEISYIGITSSGIVWELKPKQRWKPFNQKHINLLEQVYQRRISAQSTEPSGW
IKINNNFEINFDKVPMEMRLPFRCIIKRDFLSAIQIEFKQSAHQKSLRAQLYWLQVDNQL
PGSMFPVVFHPVAPPKSIALDSGEMNFKHQLTHKLRGTQPWLAFFEIRYQFYKRNELLWR
VIGHYRGQFLKQMYILVLGLDVLGNPFGLIRGLSEGVEALFYEPFQGAVQGPEEFAEGFV
IGVRSLLGHTVGGAAGVVSRITGSVGKGLAAITMDKEFQQKRREEMGRQPRDFGDSLAKG
GKGFLRGVVGGVTGMVTKPVEGAKKEGAAGFFKGIGKGLVGVVARPTGGIIDMASSTFQG
IQRVAESTEEVSSLRPPRLIREDGIIRPYDRGEAEGCDLFENSHIKKLEDESFQHYCPVV
GRGKAYIVVTSRRVILMKEVEILGHMTTDWDYLYEDFTRPPWTEENLLQIFVKDKGMLCF
HKKETSGQELIRKIRLPDAAAAKRTCQAIDAAEGSRHQQTLVKQASLKRSTSRT
NT seq
7725 nt
NT seq
+upstream
nt +downstream
nt
atgacgggcttgaggcaacgggacgttgtgccttccctcgtggcctccattggggctgcc
gagtcgtctctgctggaaatccagtttgagaccaacccggagggcagcgtggctgaccag
agcctcttccttcagtcgcagcccgtggaaatcatctacgatgcgaggacaatcaacgcc
ctggtggaattcttccaaaccaaccgaggcatggacctggaacgcctaaccacagccacc
ctgtcgaaactggaagaaattaaagagaggacctccacagggcttatgcatatcatcgaa
acacggaaagtcctggacctcaggatcaacttgaagccttcctatcttctgatcccacaa
accggcttccaccacgaaaagtcaaacttgcttattttggacctcggtactttccagctg
aagagcatcagccaaggtcaccaccagaactccagcagttccttggaggagatcatggac
aaagcctatgacagatttgatgtcgaaatcaagaacgtacagctgctgtttggcagatca
ggggaagattggaaaaaggcccggtctgagcccgcatccctgctgcacatattacgtccc
atggacatccgtgtccaagttgccaaatctatggtggagaaggacgtcaggatggcaaag
tttaaagtgtcaggcgagcttcctttggttcacctgagaatttctgatcagaagatcaaa
ggggttttggagctaattgacagcattcctctcccacagaaatccagtgtttcagtttca
actgcaaaggctccggccattcctgtggtctctgagggaaggaaagacttccttggggcc
acacgattgctggaagaattagaaccagaatccgacgatgaatattttgatttcgatgat
tatccccaacaaccggagaaagtggttccccccaccaaaaagcagctgaagaatgaaatt
gaaactgttcaggaggagctgacggacctgcaattaaaatttgaaattaaggaggtgatt
ttggaactgaccaagcagctgcagagggaagaaacaatactcgtatttaacgtgcagcag
cttgggatggaagccactgctaggacatttgacctgaaagctgagacttacttgagaaag
attagcctgaattattatgaaattcaaggtaaacggcagcaaattcatttgatcagttca
tcggatgtctccggattagaccttttgaaagtagaatatatcaaggccgataaaaacggt
ccaaaatttcagacagtttttgacaataccgagcaaagaatggaggtgaccttctcctcc
ctccaagtggtgctgcacacccaggctcttctctcagctctggggtacctcatggcggtg
gtcccagcaagggagaagcagcccccagccctgcagagacgggaggagacccagaggacg
gaatctacgtggaaagaaggcaaggtgaaagaaccggtgccgtcggctggagccccaaaa
tccagcctctcggaagaagcccagaaggatgataagaccagcctcctgctgaactttgaa
ataaacaaggtcttagttacgttaacgaagcaagtggaaaagcaaagctttcctttgtac
aggctcacgaatttcctgagcaacttccaaatcgccaccgaggccttgagtgcggctacg
gtgcaggccgccgagaaggccgccaccagcatgagggatttcgcccagaggagtttccgc
ctcgccatggacatcaacctgaaggcccccgtcatcgtcgtcccgcagtcttccgtctct
tgcaacgctgtggtctttgaccttgggctgattaaaatacagaaccggttcagcctggtg
ccggcagaggattgctcactgcctcccatcgtggataaaatggaggttcacctcacccag
ctgaagctgtccaggacagtcttgcagcgaggggcttcgcagccagacattcaaattttg
cgccccattaatctggacctttcggtcaaccgcaacctggccgggatgtggtaccacaaa
atacccctggtggaagtccaaggttaccttgataccatcagcccgggaggacttcatcaa
gcttatgaaacatctatttactattccaaaggagacccgttaaatattattagttcttca
gatgaatccggcaagcatcttctaaagatggaatacgttaaggccgatgttgatggtcct
cactttgacaccgtttacaacagaacaaagcagttgctgaatgtatccttttcttcgtta
gacttaattttgcacaccgaagccttgctttctatcatgaattttttcacatctgcctca
agtggtatcacgccagctgagaagggggctgatgtagagcgaccatcagaagaccccaaa
acagctgttgcaaaatcaggtatcggagggttgatatctctctttatagagccaaggtgg
cacagtctctccacccgttcccctttcatttgtagggcggtggtggggagcagccctcag
ccagagatcgagattttgcagccggtcaacctccagctctcagttcagaggaacttggcc
tccgattggtatctgcagattccggggatctccatccaaggagacttaaaggccatgctg
ctctcgctcagccaggacgacttgactttgctcatgaacattttgctggagaatctgagt
gaagctgctgcagaccccaaagccacatcctcaaccttgccagatgttcagaagcctaaa
aagcccgaagctgcagctgtggctggccttggggaaggaacccctgagattcccgcagag
gaagtccttgggggagaccagctggtgaaaagtgtggcggtgatgtttcatttcaacttt
gaatcgctctcccttgttctctacaatgccgataagaaccagaaacctcagcttcacaac
agccatttacgccttggagaactggggctgcatttcatgaggtcatcgggacaaatgttt
tcggacggctctctagatgtcagcaccaagatggaaacgtgcaccttggacgatctcaga
gaaggggtggagaaagcaactgcaagaatgctggccagaagggatggtaaagccgagagc
gtcatgattgatatccgctacaagcaggataaaaacggggccgacatcgtagctgtcttg
gatcagctgtatttgtgtgccagcatggagttcttgctgacggtggccgacttcttcatt
cagtccatgcctgcagccggagcggcggaaaaaccggcccagttggctttgaaggcgtct
tcccagggaaagcctaggcctgagaaagctgcagctgcgccatcaaacatgtcggtggtc
gcgcacatcttggacccagaaattgtgtttgtggccaacttgaccaaggccgatgcgccg
gccttggcagcttccttccagggcagcttcatgctgtcgggcggctccgaggcgaagcac
atgaccgctcgggtcctggacctcagggttctggcctgccctttcctccggggggcggcg
aagcagaacgtcaccacggtggtgcagccatgctctttaattgtggaagccacgatggat
acttccggagtgcaaagcgtggatgtgaacatggagaccttggttgtgaaagtgtcgcca
atcattctcaacactgtaatgactatcctggctgctatgaagcggcaggccaaggaggag
gaatctggagggaccccttgtaatcctgtggacctctggagcgtcaaatccgtagacgag
tgccagagttggttcctgggcgtcgacatggccacggaagccacggaagccttggtagcc
agcgagcagagggaaaaaaaggaacattttgtggtggtggtgaagtcggttcaagtcacc
ctggagtgcggcttgggacatcgtaccgtccctttactcttagcggaatctgcattttct
ggaacggtgaaaaattggtcttctctcatgtcagcccaggctgatgtgacgctggagaaa
cctcagcttcacaacagccatttacgccttggagaactggggctgcatttcatgaggtca
tcgggacaaatgttttcggacggctctctagatgtcagcaccaagatggaaacgtgcacc
ttggacgatctcagagaaggggtggagaaagcaactgcaagaatgctggccaggagggat
ggtaaagccgagagcgtcatgattgatatccgctacaagcaggataaaaacggggccgac
atcgtagctgtcttggatcagctgtatttgtgtgccagcatggagttcttgctgacggtg
gccgacttcttcattcagtccatgcctgcagccggagcggcggaaaaaccggcccagttg
gctttgaaggcgtcttcccagggaaagcctaggcctgagaaagaaacaaaggggaaggga
caacatgaaagaaaattgttttggtgcaaaacagggccggaaggctacagtgaggtctca
ggggttcccatcgccaagccagggcggaggctccatgctgtgagagcgccccagagcagc
tcctccaactcggtcgtggtgcagatagacgcagaagaagggaacaaagtgattaccctg
cgctcccctctccagattaaaaaccacttctctgtcccatttataatctacaaatttgtt
aaggacattaaacagctgaggcctttaggtgtgtctcttccagaagaggaatttcatgtt
cccttggattcgtatcgatgtcagctgtttgttcagccaacaggcgtcttgaagggacaa
tatgagccatccacaacctacatttcctggcaggaagaactgcacaggagcagtgaagtt
acctgtatgcttcagtgcccagccgccgatgcccgtttcctgccactccgcttgaaggcc
acggccgtgcccgatgagctcaacttcatcgcaacccacaaggagaactgggagccggcc
tacattattcatttctaccccacgcttaccctgcagaaccttctgccttactctctgcaa
tacatcctcgagggcaccgcgaaggcccacgagctgcacgaaggaagtgctgccgatgtt
ctccactcgagaatcagcggggaggtcatggagctgatcgtggtcaaataccagggcaga
gactggagcgggcgctttcgtgtccatgatgccctgccggagttcttccctgtctgcttc
acctcacattctgccgaaggggctacgttggatgtttaccttcacgtcaagaagtccagc
acccacaccaccctctcggtctatagtccctactggatcatcaacaagacttcccggatc
ctccagtaccgcgccgaggacgttcatgtgaagcacccagcagacttccgggacaccgtc
ttattctccttcaagaaaaagaatattttcagtaaaaacaagatccagctgtgcatctcc
accagtacatggtcaaatggtttctccctggatacagtgggaaattctggatgtgtgaag
tgtccagccggcaacatggactttctgtgtgttgcattttggcctgaaagtccctctggc
aagctctgcatcagagccagcggctccgaacaattttccaagcccttcttctacaaccga
caggacaacgggaccttgctgagcctggaaaaaatgaacacgggtgtcctggtgaacgtc
agcctggccgagcattccatcgttatcaacgtctccgattattatgagggggctgcccct
gcgttggtcatcaaccagacttcgtgggcgactctgaagtaccagcagagcggcctgcag
gaagtgatggagctgaagccgaaggaagttagactgttcgtgtgggaagatcctacaggg
atgagaaaattaagttggaactatgcacaaaacacgggtgaactggatcttctcaaggac
gagtgtgggcagtttccgtacaacgccaacacccccatccactgggtctctttcctggac
gggaggcagagggtcctgctgttcacggaggatgtggctttggtgtccaaagccaggcag
gccgaggagatggagcagcctgaccaggaaataaacatcgctcttcagggccttggcctt
tccctggtcaacaacacccggaagcaggagatctcttacataggcatcaccagttcaggc
atcgtctgggaactgaaaccaaagcaacggtggaagcccttcaaccagaagcacatcaac
ctcttggaacaggtttatcaaaggcgtatctctgcgcagagcacggagccttccggctgg
attaagatcaacaacaactttgagataaactttgataaggtgccaatggaaatgcgcctt
ccattcagatgcataatcaagcgagactttctgtcggccatccaaattgaattcaagcag
tcggcgcatcaaaagagcttacgggctcagttatactggctgcaggttgacaaccagctc
cctggttccatgttccccgtggtgtttcaccctgtggctcctcccaaatccatcgcactc
gattcaggtgagatgaatttcaagcaccagttgacccacaaactcaggggtacccaacct
tggctcgctttcttcgaaatcagatatcagttttacaaaagaaatgaattgctgtggaga
gtcatcggccattacagagggcaattcctgaagcagatgtacatccttgtgttggggctg
gatgtcctgggcaaccccttcggcttaatcagaggcctttcagaaggggtggaggccctc
ttctacgagcccttccagggagccgtccaggggcccgaggagtttgccgagggcttcgtg
attggcgtgaggagccttcttggccacaccgtcgggggtgcagccggcgtggtgtcccgc
atcaccggctcggtcggaaaaggcctggccgccatcaccatggataaggagttccagcag
aagaggcgagaggagatggggcgccagccgagggactttggggacagcctggccaaaggc
ggaaagggcttcctgcggggagttgttggcggagtaactgggatggtcacaaaacctgta
gaaggtgccaagaaggagggtgcggctggcttcttcaagggcatcgggaagggactggtg
ggagtggtggcccgcccaaccgggggcatcattgacatggccagcagtaccttccaaggg
atccagagggtggccgagtcaaccgaagaggtctccagcctgcgcccccctcgcctcatt
cgcgaagacgggatcattcggccctacgaccgaggcgaggctgagggttgcgacttgttt
gagaactcccacatcaagaagctggaggacgagagtttccagcactattgtccagtcgta
ggaagaggaaaagcctacattgtggtcaccagcaggagagtcatcttaatgaaagaagtg
gagatcctgggtcacatgaccacagactgggattacctatatgaagattttacacgtccc
ccttggacagaggagaacctgctgcaaatcttcgttaaggacaaagggatgctgtgcttc
cacaaaaaggagacttcgggacaagaattaatcaggaaaattcgactgccggacgcggct
gccgcgaagagaacatgtcaagccattgatgcggccgaaggcagcaggcaccagcagacc
ctggtgaagcaggcctctctgaaaaggagcacctccaggacctga
DBGET
integrated database retrieval system
