Thamnophis sirtalis (common garter snake): 106542506
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Entry
106542506 CDS
T06107
Symbol
WDR82
Name
(RefSeq) WD repeat-containing protein 82
KO
K14962
COMPASS component SWD2
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106542506 (WDR82)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106542506 (WDR82)
03036 Chromosome and associated proteins [BR:
tsr03036
]
106542506 (WDR82)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106542506 (WDR82)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
106542506 (WDR82)
COMPASS/SET1 complex (yeast)
106542506 (WDR82)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WDR55
EIF3I
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_IFT122_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
WD_LRWD1
Beta-prop_WDR35_TULP_N
Beta-prop_NWD2_C
PEP5_VPS11_N
Beta-prop_EIPR1
Beta-prop_HPS5
MinC_C
SMN_Tudor
MIOS_WD40
Motif
Other DBs
NCBI-GeneID:
106542506
NCBI-ProteinID:
XP_013913757
UniProt:
A0A6I9XIK6
LinkDB
All DBs
Position
Unknown
AA seq
289 aa
AA seq
DB search
MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGNLPCCCF
HTDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLDKTIRLWDLRSPNCQGL
MHPQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYDRTCEWTGLKFSN
DGKLVLLSTNGGIIRLIDAFKGAVLHTFTGYNNSKAVTLEASFTPDSQFIMIGSEDGKIH
VWNGETGMKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTIDD
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacggacaacgtgctgcggagcttccgcgtggccaaagtgttccgcgagaac
tcggacaagatcaactgcttcgacttcagcccgaatggcgagacggtcatctccagcagc
gacgacgactccatcgtgctctacgactgccaggagggaaatttgccttgttgttgtttc
catacagatactatcagatacctttctcttcatgacaataaatacattagatactttcca
ggacatagcaagagagttgttgctttatctatgtctccagtggatgatacctttatatct
ggctcacttgataagactatcagactttgggatcttcggtcaccaaattgtcagggtctg
atgcatccacaaggaaaacctgtatgctcatttgatccagaggggctgatttttgcagct
ggggtgaattctgaaatggtgaaactttatgatcttcgctcctttgataagggtccattt
gctacctttaagatgcaatatgaccgaacctgtgagtggactggcctgaagttcagcaat
gatggaaaacttgttcttctttcaactaatggaggaatcatacggctcattgatgccttt
aaaggagcagttcttcatacatttacaggatataataatagcaaagctgtcacattggaa
gcttccttcactccagattctcaatttataatgattggatcagaggatgggaagattcat
gtctggaacggagagactggaatgaaggtagcagtgcttgatgggaaacacacaggaccc
attacctgtttgcaattcaaccccaagtttatgacattcgccagtgcatgctccaatatg
gctttttggttgccaactatagatgactaa
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