Thamnophis sirtalis (common garter snake): 106542528
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Entry
106542528 CDS
T06107
Symbol
LRRC4B
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04514
Cell adhesion molecule (CAM) interaction
tsr04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
106542528 (LRRC4B)
04517 IgSF CAM signaling
106542528 (LRRC4B)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tsr04515
]
106542528 (LRRC4B)
Cell adhesion molecules [BR:
tsr04515
]
Immunoglobulin superfamily
NGL family
106542528 (LRRC4B)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_14
LRR_9
LRR_1
ig
V-set
Ig_2
VEGFR1-3_N_Ig-like
LRRNT
LRR_EndoS
LRR_RPS2
DUF7617
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
106542528
NCBI-ProteinID:
XP_013913785
UniProt:
A0A6I9Y687
LinkDB
All DBs
Position
Unknown
AA seq
646 aa
AA seq
DB search
MATRRCTRKPWLAPGISRMIWKHLVLISLWLPSFVLGGASPTSCPAACSCSNQASRVICT
RRELVEVPESISINTRYLNLQENNIQVIKTDTFKHLRHLEILQLSKNLIRKIEVGAFNGL
PNLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELK
KLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDMIRPGSFQGLT
SLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW
HCNCDVLWLSWWLKETVPNNTTCCARCHAPPNLKGRYIGELDQSHFTCYAPVIVEPPTDL
NVTEGMAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLNFTNVTVQDTGQ
YTCMVTNSAGNTTASATLNVSAVDPATTGYTYFTTVTVETMDSGQEESIPTKKEPGPTPS
QGWGMTYSTTSLTPRSTRSTEKPFTIPITDVTENGMKDLDDVMKTTKIIIGCFVAITFMA
AVMLIVFYKLRKQHQLHKHHGPTRTIEIINVEDELPAAAGAPGDSHLALPAIEHDHLNHY
AAFKAHYNNNSGGGPLTCSKNPMLNSIHEPLLFKSSSKENVQETQI
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atggccacccgccgctgcactcggaagccttggctggcccccggcatctctagaatgatt
tggaaacatcttgttctcatctccctctggctgccatcatttgttttgggtggagcctcc
cccacctcctgcccagctgcttgttcctgcagcaaccaagccagccgggtcatctgtaca
cgccgggagctggtggaagtgcccgagagcatttcaatcaacacacggtacctcaatctg
caggagaacaacatccaggtgataaagactgatactttcaagcatcttcgtcatcttgag
attttacaacttagcaagaacctcattcgtaagattgaggttggtgccttcaacggcttg
cccaacctcaatacactggagctctttgacaaccggctaaccactgtccccacacaggcc
tttgagtacctctccaagttgcgggaactatggctgaggaacaatcccattgaaagcatc
ccttcttatgccttcaatagagtcccttctttgcgtcgtctggaccttggagagctcaag
aaattggagtatatctcagaagcagcttttgaaggcttggtcaatttgaggtacctgaac
ttgggcatgtgcaaccttaaagatattccaaatttgacagccttagtacggctagaagaa
cttgagctttctggaaatcgcctggacatgatccggccgggctccttccaaggtctgact
agccttcgcaagttgtggttgatgcatgcccaagtagccaccattgaacgcaatgctttt
gatgaccttaagtcattggaagagctcaatctctcccacaataatttgatgtccttgccc
catgatctgttcacccctttacaccgcctagaacgtgtccacctcaatcataatccttgg
cattgcaattgtgatgtgttgtggctcagctggtggctcaaagagacagtgcccaacaac
actacctgctgtgcccggtgccatgccccaccaaacctaaaagggcgatatattggagag
ttggatcaaagccattttacttgttatgcccctgttatagtggagcctccaactgatctt
aatgtgactgagggaatggctgctgaattaaagtgccgaacagggacctccatgacatca
gtgaactggctcacacccaatggcacactgatgacacatggatcctatcgggtacgcatt
tctgtccttcatgatggcacactcaacttcaccaatgtgacagtccaggacactgggcag
tacacctgtatggtgactaattcagctggcaacaccactgcttcagccacactcaatgtc
tcagctgtggatccagccactacaggttatacttacttcactactgtaactgtggagact
atggattctggccaagaagaatcaattcccacaaagaaggaacctgggccaacaccttcc
caaggctggggcatgacttattccactacttcactgactcctcgcagcacacgcagcact
gagaagccatttactatcccaatcactgatgtcacagaaaatggcatgaaagatttggat
gatgtgatgaaaactactaagatcataattggctgttttgtggccattaccttcatggct
gctgtgatgctcattgtcttctacaaacttcgtaagcagcaccagcttcataagcatcac
ggacctacccgcactattgagatcatcaatgttgaagatgagttgcctgcagcagctgga
gctcccggtgacagccatcttgcacttcctgccattgagcatgaccacctcaaccactat
gctgctttcaaggctcactacaacaacaatagtggtggtggacccctcacgtgctccaag
aaccccatgctcaattccatccatgaacctcttttattcaagagcagctctaaagaaaat
gtccaagagacacagatatga
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