Thamnophis sirtalis (common garter snake): 106542626
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Entry
106542626 CDS
T06107
Symbol
USP39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106542626 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsr03041
]
106542626 (USP39)
Spliceosome [BR:
tsr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
106542626 (USP39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
106542626
NCBI-ProteinID:
XP_013913884
UniProt:
A0A6I9XE27
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All DBs
Position
Unknown
AA seq
533 aa
AA seq
DB search
MAARVKREPRSPQPWLGCPTVGWARVKRESAEEVAIKQEPVEPEEEEDEDGAEEPTVKYG
RFDPEDRRSRHCPYLDTINKSVLDFDFEKLCSISLSHINVYACLVCGKYFQGRGLKSHAY
IHSVQFSHHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFAKQHITNLDRQAKLSR
AYDGTTYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEENYKDIKRPPGDIMFLL
VQRFGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKNFQITKQGDGVDFLSWFLNALHSA
LGGTKKKKKTIVTDVFQGSMRIFTKKLPHPDLPAEEKEQLLQNNEYQEKMVESTFMYLTL
DLPTAPLYKDEKEQLIIPQVPLFNILAKFNGIMEKEYKTYKENFLKRFQLTKLPPYLIFC
IKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAVHKNTIYDLVANIVHDGKPTEGA
YRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRRDSQEASHQQGT
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgcgtcaagcgggagcctcgcagcccccagccgtggctgggttgcccgacg
gtgggctgggcgcgggtgaagcgggagtccgccgaggaggtcgccatcaagcaggagcct
gtcgagccggaggaggaagaggatgaggacggcgcggaggagcccacagtcaaatatggt
cgatttgatccagaagatcgccggagccgccattgtccctacttggacaccatcaacaag
agcgtcctggattttgactttgagaagctgtgttcgatctcactctcacatatcaacgtc
tatgcttgtttggtgtgtgggaaatatttccagggtcgtggcttgaagtcccatgcttac
attcacagtgtccagttcagtcatcatgtgttcctcaaccttcacaccttgaagttttat
tgtctaccggacaactatgagatcattgactcttctcttgaggatatcacttatgtactg
aagccaacattcgccaagcagcacatcaccaatttggacaggcaggccaaactctcccgt
gcctatgatggcaccacgtacctgccgggcattgtgggattgaataacatcaaagccaac
gactatgccaatgcggttctccaggccttgtcaaacgtgccacccctgcggaattacttc
ctggaggaagagaattacaaggacatcaagcgtcctccaggggatatcatgttcctgctg
gtccagaggttcggggagctcatgaggaagctgtggaacccccggaacttcaaggctcat
gtctctcctcatgagatgctgcaggctgtggttctgtgcagtaagaagaacttccagatc
accaagcagggggatggagttgactttctctcctggttcctgaatgccttgcactctgct
cttgggggcaccaagaagaagaagaagaccattgtaaccgatgtcttccaaggctccatg
cggatattcaccaagaaattaccacaccctgatctgcctgcagaagaaaaggagcagctg
ctccagaataacgagtatcaagagaaaatggtggagtccactttcatgtacctgaccctg
gatctccccaccgcccctctctacaaggatgagaaggagcagctcatcatcccacaagtc
ccacttttcaatatattggccaagtttaatggaatcatggaaaaggaatacaagacctac
aaagagaacttcctgaagcgcttccagctcaccaagctgcctccgtacctgattttctgc
atcaagaggttcaccaagaacaacttctttgtggaaaagaatcccaccattgtcaacttc
cccatcacgaatgtggatctgcgggaatacctctcggaggaagtgcaggccgtgcacaag
aacaccatctatgacctcgttgcaaacatcgtgcatgatgggaagcctacggaaggggcc
taccggatccacgtgttgcatcacggcacaggcaagtggtatgagctgcaggacctgcag
gtgacagatattctcccccagatgatcacgctgtctgaggcttacatccagatctggaaa
aggagagacagccaagaagcgagccaccaacaaggaacgtga
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