Thamnophis sirtalis (common garter snake): 106542960
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Entry
106542960 CDS
T06107
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106542960 (HELZ)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
106542960 (HELZ)
3'-5' decay
Other 3'-5' decay factors
106542960 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
ResIII
AAA_30
zf_CCCH_4
PAM2
UvrD-helicase
Mov-10_helical
AAA_22
zf-CCCH_4
AAA_7
PhoH
AAA_16
MOV-10_Ig-like
Helicase_RecD
T2SSE
AAA_5
Motif
Other DBs
NCBI-GeneID:
106542960
NCBI-ProteinID:
XP_013914314
UniProt:
A0A6I9XF74
LinkDB
All DBs
Position
Unknown
AA seq
1727 aa
AA seq
DB search
MKKNYGKADEDCRHVLGEGLDREGDTFRAVLGCVHLKGKLQAVSNALSNSLMGESLNGMV
TKDLTRLKNLLVQTEVATCKIPSVHHVEEVEEGCHDGWQFRPPPRGVTSSEEYTLCKRFL
EQGICRYGAQCTSAHSQDELTEWQKRYASRLIKLKQQKENKQCLGSYMESLIEKWMNSLS
PEKVLSECLDGVRVEHSPELSITVTTKKSHQMWTFAVTCKPARMLYRVALLYDAHRPHFS
IMAISAGDSTTQIKQEVPETCQEWVGGKMTQNGTDHSVYKISVAFSTEIFGTFRQTVVFD
FGTEPVLMQRVMIDAASTEDLEYRMNARQQLLTTAKRWDSTSKTIVEFEPNETTELDKSL
LIRYQIPLSADQLFTQSVLDKSLTKSNYQSRLHDLLYIEEIAQYKEVSKFNIKVQLQIVA
SFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPITKEKSGLSQ
GTKEKVYEAIIEEKTKEYIFLRISRDCCEELNLRADCEMQVELQFQLNRLPLCEMHYALD
RIKDNGILFPDVSMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIHLPPVLIIG
PYGTGKTFTLAQAVKQILQQEDTRILICTHSNSAADLYIKDYLHPYVEAGNPQARPLSYT
SELFYEGKLMASGKQPAHKDFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRR
KWPVAWGKLDDGSIGVVTPYADQVFRIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTV
RTRHTCKHKQTAMKRKEHLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCS
IGRCRKFWERFIALCHDNESLHGITFDQIKAQLEALELKKTYVLNPLAPEFIPRALRQQH
SSNTNKPQQSPPKVKSHHHNHSDHFHTDGIVQPTASVLIGNPVRAYTPPPPPPPPPPGPH
PNLGKSPSPVQRIDPHTGTSILYVPAVYGGNMVMSVPLPVPWTGYQSRFAVDPRIITHQT
AMAYNVNLLQAHGRGSPIPYGLGHHSPVSIGQQQLHHSEKEQLELNRNSKNEPGAGPEIS
KIRTSEKNPLEAKQVDLEANPQNRSPESRSSSSYPNSKFHRKDNINPRQLNIHLTPPQAQ
YAVPSRPFQHLAQISRHPYPGPPQPNLLSQQQNHLSEQHNQMPPPQSQIVQQHSHLNQQP
QPPSSQLSPAFPTGPNQSFFKNPVPHRPHSPGTDTSVLEQLPPSVLQDVSSPLRPIAQPN
LMMPSHLNHFIEENPPGVSVGEPLDRIHGNLALETLRQQQARLQQWNEHNAYLSQGNISY
SHHPHPHLSHLSQQSMGLHQQQVRANWKLANNIEDETEATYSRFQDLLRELSHRDQTENR
DLVEMPPPQSRLLQYRQVQPRSPPALLSPTCNSNHSGHFPNFSESRDLEISNNPAFQQHL
PQMYNPPFSVPSEHLTPPSLKYLQPDGSWTYANLHQSHLMGQGFHYGIPPLPHRSQPNPF
IQIQNHQHAVGQEPFHPLTSRAVSASSLHSLEEYEPRGPGRPLYQRRMSSSSTQACSEGL
NTPPDNVGQCQELQDQSNPSSFNYSPPEWWVNSSSSAPYQNIPCNGSNRAIPPREQLVPP
KTIKSPEEQMKVENIPLSSSFNYNVLQHLGQFPPLMPNKQIVESNSNSQPSAGLNKPAMS
YASALRAPPKPRPPPEQAKKNSDPLSLFQELSLGSSSGSNGFYSYFK
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaactatggaaaggcagatgaagactgtaggcatgtattgggagaaggactg
gacagggaaggggatactttccgtgcagtgcttggctgcgtgcatcttaaagggaagcta
caggctgtttctaacgctctttctaactcactgatgggtgaatcactgaatgggatggta
actaaagatctgacgaggctgaaaaaccttcttgttcaaacagaggtagcaacttgtaaa
ataccctcggtacatcatgtggaagaggtggaagaaggatgtcatgatggctggcaattt
cgccccccaccccggggagtcacaagtagtgaagaatacacattatgcaaaagattttta
gagcaaggaatttgcagatacggtgcacagtgtacttcagcacattcccaggatgagctg
actgaatggcagaaacgatacgcttcccgcttgataaagttaaaacaacagaaagaaaac
aagcaatgtttgggaagttacatggaatccttaattgaaaaatggatgaattcattatct
cctgagaaagtgctcagtgaatgtcttgatggagtaagagttgaacatagccctgaactc
tcaattactgtcaccaccaaaaaatcacatcagatgtggacttttgctgttacatgtaag
cctgcaagaatgctgtatcgagtggcactcctttatgatgcgcatcgtcctcattttagt
atcatggcaatatcggctggagatagcaccacccaaataaaacaagaagtcccagaaacc
tgtcaggaatgggttggaggaaagatgacccagaatggaacagatcattcagtgtacaaa
atcagtgtagcttttagcacagaaatctttgggacctttcgtcaaactgtggtatttgat
tttgggactgaaccagttttgatgcaacgcgtgatgattgatgctgcttcaacagaagat
cttgaataccggatgaatgcacggcagcaactgttaaccacagccaagcgttgggattcc
acttccaagacaattgtagaatttgagccaaatgagactactgaattggataagagcctt
ctgatcagatatcagatccctctgtctgctgaccagctatttacacagtctgtcttggat
aaatcattgaccaagagtaattatcagtcacgactacatgatctcctttatattgaggaa
atagcacagtataaagaagtcagcaagtttaacatcaaagtgcagttgcagattgtagcc
agtttcatgcttactggtgtttctggaggtgcaaaatatgcccaaaatgggcaacttttt
ggacggttcaaactcactgaaaccctttctgaagatactttggcagggcgactggtgatg
accaaagtcaatgctgtttatttattaccaatcactaaagagaagtcagggctgtcccaa
ggaaccaaagagaaagtatatgaagcaattattgaagaaaaaacaaaggaatatatcttt
ctgagaatatccagggattgctgtgaagagcttaaccttcgagcagattgtgaaatgcag
gtcgagcttcagtttcagttaaaccgcttacccctctgtgaaatgcattatgccttggat
aggatcaaggacaacggtatcctgtttccagatgtcagcatgacccccacaataccttgg
agtcccaataggcagtgggatgagcagttggatcctaggctcaatgcaaagcagaaggag
gctgttctggccatcacaacaccactgtcaattcacctgcctccagtccttattatcggt
ccttatgggacgggcaaaaccttcactttggctcaggcagtcaaacaaattctccaacag
gaggacactaggattctcatttgcacccattctaatagtgctgctgatctctacataaag
gattatttacatccatatgtagaagcaggcaatccccaggcgagacctctcagttatact
tctgagcttttctatgagggcaaattgatggccagtggaaaacagcctgcacacaaagac
ttttatcctctgacattcttcacagcacgaggagaagatgtacaagaaaagaacagcact
gctttttacaacaatgcagaggtctttgaagtagttgaacgtgttgaagaattaaggagg
aagtggccggtagcctggggaaagttggatgatggcagcataggtgttgtaacaccatat
gctgatcaagtgttccgaattcgggcagagcttcggaaaaaaagattgtcagatgtcagt
gttgaaagagtgttaaatgttcagggaaagcagtttcgagtgttgtttctcagcacagta
cgaacccgacacacttgcaaacacaagcaaacagcgatgaaacggaaggaacatttattg
gaagattcaacagaggacttagattatggttttctgtccaattacaaacttctcaacaca
gccattacaagagcacagtccctagtagctgtggtgggcgacccaattgctttatgttcc
attggaagatgcaggaaattttgggaaagatttattgccctgtgtcatgataatgaaagt
cttcacggtatcacatttgatcagatcaaggctcaattggaagctctggaattaaagaaa
acctatgtattgaatccgctggctcccgagtttattccacgggctctgcgacagcagcat
tcatcaaacaccaataaaccacagcaatcgccaccaaaggtaaaaagccatcatcataac
catagtgaccattttcacactgatggaattgttcagccaacggcttctgtcttaattgga
aatcctgtcagagcatataccccaccaccgccaccccctccacctcctcctgggcctcat
cctaacctgggaaagtctcccagtcctgtacagcggatagatcctcacactgggacaagc
attctttatgtacctgctgtttatggaggaaatatggtcatgtctgtgcctttacctgta
ccatggacagggtatcagagtagatttgcagttgatcctcgaatcattactcatcaaaca
gccatggcatataatgtgaatcttttacaagcacatggacgtgggtcccccattccctat
ggtcttggacatcattcaccagttagtataggacaacagcagcttcatcattcagagaaa
gaacaacttgaactaaatcgaaacagcaaaaatgagcctggtgctggtcctgaaatcagt
aaaattcggacatctgagaaaaaccctttagaagccaaacaggttgacttagaagcaaat
ccccaaaatagaagccctgaatcgcgttccagttcttcttatcctaattctaaatttcac
cgcaaagataatattaaccctaggcagctgaacattcacctcactcctccccaagcccag
tatgctgttcctagccgccccttccagcatctagcccaaatttcaaggcatccatatcct
gggccaccgcaaccgaaccttttaagtcaacaacagaatcatttgtctgaacaacataac
caaatgcctcctccgcagagccagatagtccagcaacacagtcatttaaatcagcagccg
caaccaccatcttcacagctctctcctgcctttccaactggccccaaccagtctttcttt
aaaaatcctgttccgcatagacctcattcccctggtacagacacttcagttttagaacag
cttcccccatctgtgctgcaagatgtcagcagccccctgagacccattgcacagcctaac
ctcatgatgccatcccatttgaaccacttcattgaagagaatcctccaggagtatctgtg
ggagaaccattagatcgtattcatggaaatttagctttggaaaccttaaggcaacagcaa
gcaagattacagcaatggaatgagcataacgcctatctcagtcagggcaatatttcttat
tctcaccatccccaccctcacttatcccacctttctcagcagtccatgggactgcatcag
cagcaagtcagggcaaactggaaacttgccaacaatattgaagatgaaacggaggcaaca
tattcaagattccaggatttgcttcgagagctctcccaccgtgatcaaactgaaaacagg
gacctcgttgaaatgccgccacctcaatcaagacttttgcaatatagacaagtgcagccc
agaagtccaccagcactcctctctcctacatgcaattcaaaccacagtggccactttcct
aatttctctgagagtagagaccttgagatctctaacaatccagcatttcagcagcatttg
cctcaaatgtacaatccccctttctcagtgccatctgaacacctgaccccaccttccttg
aaatacctgcagccagatggatcatggacctatgctaatttacaccagagtcatctcatg
gggcaaggctttcattatggtatacctccattgcctcatagatcgcaaccgaaccctttt
atacaaatacaaaatcatcagcacgcagttggtcaggaaccatttcaccccctcacttcc
cgagcagtatctgcttcttctctgcatagcttggaagagtatgaaccaagaggacctggc
aggccattgtaccaaagaagaatgtcatctagttcaacccaggcttgttctgaaggttta
aatactcctccagataatgttggacagtgtcaagagcttcaggaccagagtaacccatcc
tctttcaattattcaccccctgaatggtgggtcaattcttcttcatcagccccctatcag
aacattccatgcaacggatccaacagagcaatcccaccaagagaacagttagttcctccg
aagactatcaaatcccccgaggaacagatgaaggttgaaaacatcccgttgtccagttct
tttaactacaatgtactccagcatctgggccagttcccacccctcatgcccaacaagcag
attgtggaatccaacagcaacagccagcccagtgctgggttgaacaaacctgccatgtcc
tacgcaagtgctctgagggctcctcccaagcccagaccccctcctgagcaggcaaaaaag
aatagcgaccccttgtctctgtttcaggaacttagcctaggtagttcatcaggtagcaat
ggcttctactcctattttaaataa
DBGET
integrated database retrieval system
