KEGG   Thamnophis sirtalis (common garter snake): 106543320
Entry
106543320         CDS       T06107                                 
Symbol
KDM5B
Name
(RefSeq) lysine-specific demethylase 5B isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
tsr  Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:tsr01009]
    106543320 (KDM5B)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tsr03036]
    106543320 (KDM5B)
Enzymes [BR:tsr01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     106543320 (KDM5B)
Protein phosphatases and associated proteins [BR:tsr01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     106543320 (KDM5B)
Chromosome and associated proteins [BR:tsr03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    106543320 (KDM5B)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID JmjN zf-C5HC2 PHDvar_NSD zf-PHD-like PHD_2
Other DBs
NCBI-GeneID: 106543320
NCBI-ProteinID: XP_013914775
UniProt: A0A6I9Y793
LinkDB
Position
Unknown
AA seq 1529 aa
MAEFLPPPECPVFEPTWEEFADPFGFIHKIRPIAERTGICKVRPPPDWQPPFACDVDKLH
FTPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCALKIPHVERKILDLFQLNRLVAEEGG
FDLVCKDRKWTKIATKMGFAPGKAVGSHIRAHYERILYPYNLFQTGASLLAPDICSKLMC
LVDDAVLEKCFQKPDITNGTKEKEYKPHDIPQRQSVQPSETCAPARRAKRMRSEATTNIK
TEIEETTETKTHNLRRRMGSTPIKPDNDKEPQAIPKREVVEKKQWLWEADREKSKGRSKK
NFNSVDLYVCLLCGSGNDEDRLLLCDGCDDSYHTFCLIPPLHDVPKGDWRCPQCLAQECN
KPQEAFGFEQAARDYTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVT
VEYGADIASKEFGSGFPVRDGKIKLRPEEAEYLDSGWNLNNMPVMEQSVLAHITADICGM
KLPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGAPGYAAEQLEDVMKKLAPELF
ESQPDLLHQLVTIMNPNTLMSHGVPIYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNF
CTVDWLPLGRQCVEHYRLLNRYCVFSHDEMICRMAAKAETLDVVVASTVEKDMAIMIEDE
KTLREAVHKLGVTESERINLEVLPDDERQCIKCKTTCYMSAVYCNCNPDLLACLYHVEEL
CTCPIYQYKMGYRHTVDELYPMMNALKLRAESYNEWASNVSEALEAKVNNKKSLMNFKAL
IEESEIRKFPDNDLLRHLRLVTQDAEKCASVAQQLLNGKRQTRYRSGGGKSQNQLTVNEL
RLFVRQLHALPCVLNQTTLLKDLLNRVEDFQKYSEKLLSEEIPSASKLQELLEVSFDFDV
DLPQLGELRLRLEQARWLEDVQNVCLDHTSLTLDDMRRLIDSGVGLAPHPAVEKAMARLQ
ELLTVSEHWDDKARTLIKARPRQSLSSLEAAVKEIDVIPAYLPNGIALKDAVKKAKDWLQ
EVESLQAGGRVPVLDMLVELITRSRSIPVHLDYLPRLESLVAEVQVWKECASNTFLSEDS
SYSLLEVLCPRCDIGTSGFKRKTKKTKESVPNGKKKSPKLESLCDLERALSECKETAAAM
AMLGEARLKEMEALHSLRAINEEKIFSDEQNVEIKVCLCQREPAAPMIQCELCRGMFHTS
CVSVSSNLQGPWVWLCPHCHRSEKPPLEKILPLLASLQRIRVRLPEGDALRYMIERTVNW
QHRAQQMLSSGNIKLLANKVDSGILYSKWQTMAGQLQETNKVSQTIGATSFSLPHEWNNR
SIHLHSLFSTGQNCIPLHTISTELNELMMEAQLLQVSLPEIQELYEILFTKEKSVGPTSE
KNDCQGKRDGICSMEKKLKRRFEREKFCSEMRARVRKIAPNKKKMKLTHLRELSKLEREG
LFDIQHTGESQLLFSEMSFSEQEDSEDENAICPADNCLQPEGDEVDWVQCDGCCNQWFHQ
VCVGVSPEMAEKEDYICTSCTRKDSPYRK
NT seq 4590 nt   +upstreamnt  +downstreamnt
atggccgagttcctgccgccgccagagtgccctgttttcgagcccacctgggaagaattc
gcggaccccttcggctttatccacaagatccggcccattgccgagcggaccgggatctgc
aaggtgcggccacccccggactggcagcctccatttgcatgtgatgttgataaacttcat
tttactccaagaatccaaaggctgaatgaattagaggctcagactagggtgaaactgaat
tttctggaccagatagcaaagttctgggaactccagggatgcgcattgaaaattccacat
gtagaaagaaaaattctagatttgttccagcttaacaggctagttgcagaggaaggtgga
tttgacttggtttgcaaggacagaaaatggactaaaatagctaccaagatgggatttgct
cctggcaaagcagtgggatcacatatacgtgctcactatgaacgcattctttacccttac
aacttattccaaactggagctagccttctggcaccagacatttgttccaaactgatgtgt
ttagtggatgatgcagttctggaaaagtgttttcagaagccagatattaccaatggtaca
aaggaaaaagaatataaaccccatgatattcctcagagacaatccgttcaaccatctgaa
acttgtgctcctgcacgtcgtgccaaacgcatgagatcggaggctactactaatattaaa
actgagattgaagaaactacagagaccaaaactcataatttgaggcgcagaatggggagc
actccaataaagcctgacaatgataaagaacctcaagctataccgaaacgagaagttgtt
gagaaaaaacagtggctttgggaagcagatagagaaaaatcaaagggacgttctaagaaa
aattttaattctgtcgatttgtatgtatgcctattatgtggcagtggaaacgatgaagat
cgtctgcttctatgcgatggctgtgatgatagttatcatactttttgtttgataccacct
cttcatgatgttcccaagggagattggagatgtccccagtgtctagctcaggaatgcaat
aaaccacaagaagcatttggctttgaacaggcagcacgagactacacgcttcgtacattt
ggagaaatggcagatgccttcaagtcagattattttaatatgccagtgcatatggtcccc
acagaattagtggagaaagagttttggcgccttgtaagtacaattgaagaggatgtgaca
gtggaatatggtgctgatattgcctcaaaggaatttggcagtgggtttcctgtaagagat
gggaaaattaaactccgaccagaagaagcggagtatcttgatagcggatggaatttgaat
aatatgcccgtgatggaacagtctgtacttgctcacatcactgcagatatatgtggaatg
aagttgccctggctatatgtggggatgtgcttttcgtcattttgctggcatattgaagat
cactggagttactccattaactatttgcattggggggaacctaaaacatggtatggagcc
ccaggatatgcagctgaacaactggaagatgtcatgaagaagctggctcctgagttgttt
gaatctcaaccagatcttttgcatcagctggttacaattatgaatcccaacacactaatg
tctcatggtgtgcctatttaccgaaccaatcagtgtgctggtgaatttgtgattacattt
ccaagagcctatcatagtggctttaatcaaggttttaactttgctgaagcggttaatttc
tgcaccgttgactggttgcctttgggtcgtcagtgtgtggagcactaccgcttattaaac
cgctattgtgtgttttctcatgatgagatgatatgtcgaatggcagccaaagcagaaact
cttgatgtggtggtagcttctacagttgaaaaagatatggctattatgattgaagatgaa
aagactttacgggaggctgtgcataagctgggtgttactgaatcagaaagaattaattta
gaagtgttgcccgatgatgaacgacagtgcataaaatgtaaaaccacttgctatatgtct
gcagtctattgtaattgtaaccctgacttattggcatgcttatatcatgtagaagaactc
tgtacatgtcccatatatcaatataaaatggggtatcgacatacagtggatgaactgtat
ccaatgatgaatgcacttaagttgcgggcagaatcttacaatgaatgggcttctaacgtc
agtgaagctttagaggcaaaagttaataataaaaaaagtctcatgaatttcaaagcttta
attgaagaatcagaaataagaaagtttccagacaatgatttattgcgacatcttcgatta
gttactcaggatgcagagaaatgtgcctcggttgcacagcaacttctcaatggcaagagg
caaacaagataccggtctggaggaggaaaatctcaaaatcagttgaccgtgaatgaactc
cgtttatttgttagacaactgcatgctttaccatgtgtccttaaccaaacaacactactg
aaggatcttcttaatcgtgtagaagactttcagaaatacagtgaaaaacttctctctgaa
gaaatccccagtgcttcaaaactgcaagaacttttagaagtcagttttgactttgatgtt
gaccttcctcagcttggtgaattaagacttcgcttagaacaagcacgttggttggaagat
gtgcaaaatgtttgcttggaccacacttctcttactctggatgatatgagaagactcata
gactctggtgttggactagcacctcatcctgcagttgagaaggcaatggccaggctccaa
gaacttttaacagtgtctgaacactgggatgacaaggctagaactctgataaaagccaga
ccacgacagtcattaagcagtcttgaagcagcagtgaaggaaatagatgttatccctgct
tatcttccaaatggaatcgctttgaaagatgctgtaaagaaggccaaagactggctacaa
gaagtggagagcctccaggctggtggacgtgtgcctgtgttggacatgcttgtagaactt
atcacaagaagtcgctctattccagttcatctggattatctgccaaggctggagtcttta
gtagctgaagttcaagtttggaaagagtgtgcaagcaatactttcttgtctgaggactct
tcctattctcttctggaggtgttatgtccaagatgtgatattgggacatcaggatttaaa
agaaaaacaaagaaaacaaaagaatccgttccaaatgggaaaaaaaagagccccaaactt
gagagcttatgtgatttagaaagagcattatctgaatgtaaagaaactgcagctgcgatg
gccatgcttggtgaagcccgtttaaaagaaatggaagcactgcattctctaagagcaata
aatgaagaaaaaatattttctgatgaacagaatgtagagatcaaagtttgcctctgtcag
agagagccggcagcaccaatgatacagtgtgagctatgcagaggaatgttccataccagc
tgtgtttcagtgtccagcaatttgcagggaccttgggtatggctttgccctcactgccat
agatccgaaaagccacctttagaaaagattctacctttactggcttctttacagagaatt
cgggtgagactgcctgagggagatgccttacggtatatgatagagagaaccgtgaactgg
cagcatagagcacaacaaatgttatcctcagggaatataaaacttttagcaaacaaagtg
gactcagggatattgtacagcaaatggcaaaccatggcaggccagttgcaagagaccaat
aaggtttcacagacaattggtgccacatctttctcattgcctcacgagtggaataacaga
tcaatacatttacattcacttttttctacaggacaaaattgcatcccccttcataccata
agtacagaattgaatgagctaatgatggaagcccaattactacaagtatcgctacctgaa
atacaagaactatatgagatcttatttacaaaggaaaagtcagtaggaccaacaagtgaa
aaaaatgattgtcaagggaagagagatggaatttgttctatggaaaagaagctgaagaga
cgctttgaaagagagaaattctgcagtgagatgagagcaagagtaagaaaaatagctcca
aacaagaaaaaaatgaaattgactcatttgagggagctgagcaaattagaaagagagggg
ctgtttgacattcagcatactggcgaaagtcagttgcttttttcagaaatgtcattctct
gaacaggaagactctgaagatgagaatgccatttgtccagctgacaactgtctacagcct
gaaggtgatgaggtggactgggtccagtgtgatggctgctgcaaccaatggtttcatcaa
gtgtgtgtgggtgtttctccagagatggcagaaaaagaagactatatttgtacaagctgt
accagaaaggattctccatatcgaaagtaa

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