Thamnophis sirtalis (common garter snake): 106543357
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Entry
106543357 CDS
T06107
Symbol
SMARCD1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106543357 (SMARCD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106543357 (SMARCD1)
03036 Chromosome and associated proteins [BR:
tsr03036
]
106543357 (SMARCD1)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106543357 (SMARCD1)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106543357 (SMARCD1)
PBAF complex
106543357 (SMARCD1)
GBAF(ncBAF) complex
106543357 (SMARCD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIB
DivIC
Motif
Other DBs
NCBI-GeneID:
106543357
NCBI-ProteinID:
XP_013914836
UniProt:
A0A6I9XLJ4
LinkDB
All DBs
Position
Unknown
AA seq
512 aa
AA seq
DB search
MAARAGFQAVAPSGGGSGAGPGAGPLGQGTPGPPVRMGPAPGQGMYRSPLPGAAYPRPGM
LPGSRMTPQGPAMGPPGYGGSPSVRPGMAQSGMDQSRKRPAPQQIQQVQQQSVQNRNHNA
KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLR
IFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIE
LDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLAR
LLGIHTQTRPVIIQALWQYIKTHKLQDPHEREYVICDKYLQQIFESQRMKFSEIPQRLHA
LLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNK
IHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKAMTDVVGNPEEERRAEFYF
QPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgggcgggtttccaggctgtagctccgagcggtggcggcagtggagccggc
cctggggcgggtccgctaggacaagggacgccggggcctcccgtgcggatgggcccggct
cccggacaaggaatgtaccgctccccattgcccggcgctgcatacccgcgccctggaatg
ttgcctggtagccgcatgactcctcaaggacctgcaatgggacctccaggctacggtggg
agcccttctgtccgacctgggatggctcagtcaggaatggaccagtctcgcaaaaggcca
gctcctcagcagattcagcaggttcagcaacagtctgtgcaaaaccgaaatcacaatgcc
aagaaaaaaaagatggcagacaaaattctacctcagcggatccgggaattagtacccgag
tctcaggcatacatggatttgttggcatttgagaggaagctggaccagactattatgcgg
aaacggttggatattcaggaggctttgaaacggccaattaagcaaaaaagaaaactgcgc
atttttatctccaacacctttaatccagccaagtcagatgcagaagatggagaaggcacc
gtagcctcatgggaactccgagtggaaggacgactattggaagattctgctctctctaag
tatgatgctaccaagcagaagagaaagttctcatccttttttaaatctctggtgattgag
ctggataaagacctctatggcccagataatcacttggtggagtggcataggactgctaca
acccaagagactgatgggttccaggtgaaaaggcctggcgatgtgaatgtgcgctgcact
gttctcctgatgttggactaccagcctccacagttcaaactagacccacgtttggctcgc
ctcttgggaatccacacccagacccgcccagtgatcatccaagctctgtggcaatacatc
aagactcacaagctgcaggacccccatgagcgggaatatgtcatctgtgataagtacctc
cagcagatattcgagtctcagcgaatgaagttctccgagatcccacagcggcttcatgca
ttgcttatgcctccagagcccattatcattaaccatgtcatcagtgttgatccaaatgat
cagaagaaaactgcttgctatgacattgatgtagaagtagatgatactttgaaaacccaa
atgaattctttcctgctttctactgccagccaacaggagatagctgcactggataacaag
atccatgagaccatagaaaccattaaccagttaaagacccaacgtgaatttatgctgagc
tttgccagagatccccagggtttcatcaatgactggctgcagtcccagtgtcgagacctg
aaggctatgacggatgttgttgggaacccagaagaagagcgccgagctgaattttacttc
cagccttgggcccaagaggctgtatgcagatatttctactctaaggttcagcagagaagg
caagaacttgaacaagctctgggaatccgcaatacctaa
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