Thamnophis sirtalis (common garter snake): 106543364
Help
Entry
106543364 CDS
T06107
Symbol
TARBP1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tsr03016
]
106543364 (TARBP1)
03036 Chromosome and associated proteins [BR:
tsr03036
]
106543364 (TARBP1)
Enzymes [BR:
tsr01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
106543364 (TARBP1)
Transfer RNA biogenesis [BR:
tsr03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
106543364 (TARBP1)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106543364 (TARBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
UFD1_N2
Motif
Other DBs
NCBI-GeneID:
106543364
NCBI-ProteinID:
XP_013914844
UniProt:
A0A6I9XGM8
LinkDB
All DBs
Position
Unknown
AA seq
1592 aa
AA seq
DB search
MDAVLADTLLSQCPDWGACLRSVCGEKGALTLERAEALRFLLERATRVGAGNRGEEAQRA
ARELALHRCLPALLSGSGVPAGESPEGWRRFVTATGGVLRSCILVCGPRLAERLAGEVLE
TCAGIQALQMEGSIEVLCAAAPWLEDPALLRRTVAAALKLLRGEGEEREEEKALLVGGRL
LPALGRNGAALSLIWEGLVLSPLADAPRVNRTLLVLSALADVLFPRLDGVTDGEAASLLD
ARLSCKFWEVVQKGLSESDALCRKRARYLLKKAVDVSDKVALECKCSLDDGNGSYLFWWC
AEKKDQFTQFWENYILIMETLEGNQIHVIKPVLPKLNSLYELAISEEKGCWMFHPSWHMC
IYKRMFESENKTLAKESVIHFLEIWQRKCLPSSQGFSEFIIGPLMDALSESSLYSRVSGQ
IMGTCPPLGIILQNFMAIFFTSLPESEKRSFLLNFIQKMSNRHWCAIPVLFLSMALAHIP
QCRALDSKGLLALRNVLQCSMITHQILLRGAAQCFLLKAAIHSIDTEKVSLSDISNFITY
LKPEESLGRRTALWRMLCDWLHVNDKYFQKTLNCEVPQAKTALSVYVQLLVEDYLKTPLT
NSEDCLPDWFDAKRVATMILLAADVEEIRHTYNDNTEQIGLKALLNPLLDVLLKLGTNPY
ISSLKIDKSLQLLLKIMQTCSIKTSRPEVDEIIVFLQKSIMLATESILDFLLRRLTANEL
NNMSHLEHCNLYLQVLSELMNFYSASEWRKRQFLCTFVSSLINTSLYNLQEIHDNEDIKL
EKQIQKVVSLAALRVVCEIMDQKPDLQLQFLPALDSLKTAIFSTQLNHVLKKPNNMEQNS
SVEEAASHEGWGKIVARYIHDQWVCLHFVLNNYQNLSKDKHLEQHFYDVQDYKRMLQSAL
EAIMILSSDHVLPVFHCMKIFVSKLMESSESLCIEAFEMSWKIIFSLSNTQLIFWPNLKA
FIQLVFDPEILVTAAKFKREGYLKIKEIIFQMIELSSTKTGIFNVLLSHCCQSWLFPPGE
ITTVENAFSNAGNYIELLIEACLFGTIFRRDQRLVQEVYAFVENLGDQCAANVVTESKNR
DDHYVRVCAIKFICLLDESNKQHKKFIGDFVMKLLDKGELMSKSKVRYYVNSLQHRIENR
LWQTLLVLFPKLDEDILSRIVDRILQAGHNNNQASVKYLIEWNIILILHKFPHYLQKFWN
CFNYDEDQFKTSICTFLAVLSHFDIILQNTSEKVSALKKALIVVLQWCFHHNFSIRLYAL
IALKKIWGMCKASHVNDFDTLTSVIESSLNQVELMHGTGNAKKNWQRIQKHFFFEYFHPL
KDYCLETIFYTLPRLSETPEEEWISLSKFTSFRDIPLSSTFPSCHSQTTLLDLKPNDWTQ
QDIGSNLAEPNNERRWMNVQKKIIPCKASGSDLDLELIFQDRATKLGKSNRKLIVVASLI
DKPTNLGGLCRTCEIFGVSALTVSNLHYINDKQFQHLSVSAEQWLSVIEVKPFQLIEYLE
QKKTEGYTIIGVEQTAKSCNLMEYCFPEKSLLLLGNEHEGIPANVIQHLDTCVEIPQQGV
IRSLNVHVSGALLIWEYTRQQMAKEKEQRQNV
NT seq
4779 nt
NT seq
+upstream
nt +downstream
nt
atggatgcggtgctggccgacacactgctctcccagtgccccgactggggtgcgtgtctg
cggtcggtctgcggcgaaaagggtgcgctcaccctcgagcgagcggaagcactgcgtttc
cttttggaacgggcgacacgtgttggggcgggcaaccggggcgaagaggcacaacgggcg
gcccgggagctggcgctgcaccgctgcctcccggcgcttctcagcgggagcggcgtaccg
gcgggcgaaagcccggaggggtggcgacgattcgtgacagccaccggcggagtgttgcgc
tcctgcattttggtctgcggaccccgtctggctgaacggttggccggcgaagtgctggaa
acctgcgccgggattcaggctttgcaaatggaaggcagcatcgaggtcctgtgcgcggcg
gcgccttggctggaggatccagcgctgctcagacgaaccgtggcggccgccctgaagctg
ctgcgtggggagggagaagaacgggaggaagagaaagcgttgctggtgggcggcaggctg
ttgccggcgttaggaagaaacggcgccgccctgagtctcatttgggaaggcctagtgctg
tcgcccctcgctgatgccccgcgggtgaaccggactctgctcgtccttagcgccctcgcc
gacgtcctgtttccccgactggacggtgtcaccgatggcgaggcagcttcgctgctggat
gcgaggctttcttgcaagttttgggaagtggtgcaaaagggactatccgagagcgacgct
ctgtgccggaaacgagcccggtatttgttgaagaaagccgtcgatgtatctgataaagtg
gccctggagtgcaagtgtagcctggacgatggcaatggatcttatttgttttggtggtgt
gctgaaaaaaaagatcaatttactcagttttgggaaaattatattttaataatggagact
ttggaaggaaatcagatacatgtaataaagccagttttaccaaagttgaatagcttgtat
gaacttgcaatatcagaagaaaaaggttgttggatgttccatccttcatggcatatgtgc
atttacaaaagaatgtttgagagtgaaaataagacattggcaaaggaaagtgtcattcac
tttcttgaaatctggcaaagaaaatgtcttccctcatcacaaggattttcagagttcatt
attggccctttaatggatgctctctcagaaagttctctgtatagcagggtatcaggtcag
attatgggcacttgtccaccattaggaataattctacagaatttcatggcgattttcttc
acaagccttccagaaagtgaaaaaaggagctttttgttaaattttattcagaagatgagc
aacaggcactggtgcgctattcctgttttgtttctctccatggcattggcacatatacca
cagtgtagagcactggatagcaaagggctccttgcattaagaaacgttctgcagtgtagt
atgatcacacatcagattcttctacgaggagctgctcagtgctttcttcttaaagcagct
atacattcaatagatacagaaaaagtatcactctcagatatttcaaactttattacatat
ctgaaaccagaagagtcactaggaagaagaactgctttgtggagaatgctttgtgattgg
ttgcacgtaaatgacaagtactttcaaaagactttaaactgcgaagtcccacaagctaaa
acagcattaagtgtttatgtgcagcttctggtggaggattatcttaaaacacctcttacc
aattcagaagattgtcttccagactggtttgatgctaaacgggtggctacaatgattctt
ctagctgcagatgtggaagagataagacacacatataatgacaacaccgaacagattggc
ttgaaggctctcttaaatcctctcctggatgtgttgctgaaacttggcactaatccctac
atctcatcactgaaaattgataaaagcctacaactgctattgaagataatgcagacttgt
tcaatcaaaacttctagaccagaagttgatgaaataatagtatttctccagaagtcaatt
atgctcgccactgaaagtattttggattttctcctcagaagacttactgcaaatgaacta
aataatatgtcacatctggaacactgtaatttatatctgcaagtgttgtcagaactaatg
aatttctattcagccagtgaatggagaaaaagacaatttctctgcacatttgtctcatct
ttaataaatacttctctgtacaatctgcaggagatacatgataacgaggacataaaactt
gaaaaacagattcagaaggtagtaagtttggcagcattaagggttgtttgtgaaattatg
gatcagaagccagaccttcaacttcagtttctaccagctcttgattcccttaaaacggct
attttcagcacccaacttaaccatgtattaaagaagcctaacaacatggaacaaaatagt
tcagttgaagaagcagcatcccatgaaggatgggggaaaattgtagcacgttacatacat
gatcagtgggtttgtcttcattttgttcttaacaattatcaaaatctttccaaggacaaa
catttagagcaacatttttatgatgttcaggactataaaagaatgttacagtctgcatta
gaagcaataatgattctttcttctgatcatgttttaccagtttttcactgcatgaaaata
tttgtttctaagcttatggaatcttctgaatctctatgcatagaagcttttgaaatgtca
tggaaaataatattttctcttagcaacacacaactgatattttggcctaatttaaaagct
tttattcaacttgtgtttgatcctgagattcttgttaccgcagccaagttcaagagagaa
ggatacctaaagataaaagagattatatttcaaatgattgaactttcatctacaaagact
ggaatctttaatgttctactaagccattgctgtcaatcttggctgtttcctcctggtgaa
ataactactgtggaaaatgccttttcaaatgctggcaactacattgaactccttattgag
gcttgtttgtttggaactattttcaggcgtgatcaaagactcgttcaggaggtgtacgct
tttgttgaaaatcttggagatcaatgtgcagcaaatgttgttacagaaagtaagaacaga
gatgaccattatgtacgagtttgtgctatcaaatttatctgcttgctggatgaatcaaac
aagcagcacaagaaatttataggagattttgtcatgaaactacttgataaaggtgaacta
atgtccaaatcaaaagtccgctattatgtgaactccttacaacatagaattgaaaaccgc
ttgtggcagacattgctagttctgtttccaaaacttgatgaggatattttatcaagaatt
gttgacaggattcttcaagctggacataataataatcaagcatcagtaaagtatttaata
gagtggaatatcattctgattttacacaagtttcctcattatcttcaaaaattctggaat
tgctttaattatgatgaagatcaatttaaaactagcatttgcacatttttagcagtcctg
tcacattttgacataattctccagaacacatctgaaaaagtatcagccttgaagaaagca
ctaattgttgtcctacagtggtgcttccatcacaatttcagtattcggctttatgctttg
attgcacttaaaaaaatttggggaatgtgcaaagcatcacatgtgaacgattttgatact
ttaacttctgttattgaatctagtctaaatcaagtggaactcatgcatggcacagggaat
gctaagaagaattggcagcgcatccagaaacattttttctttgaatattttcatccactt
aaggattactgtcttgaaacaatattttatacgctgccacgcctttcagaaactcctgaa
gaggaatggatctctctctctaaatttacttcattcagagatattccattgagttcaaca
ttcccttcctgccattctcaaactacacttcttgaccttaagccaaatgactggactcag
caagacatcggatcaaatttagctgagcccaataatgaaaggcggtggatgaatgttcag
aaaaaaattatcccttgcaaagccagtggttctgatttggatctggagcttatatttcaa
gatcgggccactaaacttggaaaatcaaacaggaaattgattgtagttgcttcactcatt
gataaacccaccaatttaggaggcttgtgtcgaacatgtgaaatcttcggtgtttctgct
ttaacagttagcaaccttcattatataaatgacaagcaattccagcatctcagcgtgtct
gctgaacaatggctttctgttattgaagtaaagccatttcagcttattgaatatttggaa
cagaagaaaactgaaggctatacaataataggggtggagcaaacagccaaaagttgcaat
ttaatggaatattgctttccagagaaatccctgttgttattgggaaatgaacatgaggga
atcccagcaaatgtaattcagcacctggacacttgtgtagaaattcctcagcaaggagtt
atccgttcacttaatgtccatgtaagtggtgctctgctcatttgggaatatacaaggcag
cagatggccaaggaaaaagaacaaagacaaaatgtttaa
DBGET
integrated database retrieval system
