Thamnophis sirtalis (common garter snake): 106543379
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Entry
106543379 CDS
T06107
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03030
DNA replication
tsr03420
Nucleotide excision repair
tsr03430
Mismatch repair
tsr03440
Homologous recombination
tsr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106543379 (RPA1)
03420 Nucleotide excision repair
106543379 (RPA1)
03430 Mismatch repair
106543379 (RPA1)
03440 Homologous recombination
106543379 (RPA1)
03460 Fanconi anemia pathway
106543379 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsr03000
]
106543379 (RPA1)
03032 DNA replication proteins [BR:
tsr03032
]
106543379 (RPA1)
03400 DNA repair and recombination proteins [BR:
tsr03400
]
106543379 (RPA1)
Transcription factors [BR:
tsr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
106543379 (RPA1)
DNA replication proteins [BR:
tsr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
106543379 (RPA1)
DNA repair and recombination proteins [BR:
tsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
106543379 (RPA1)
MMR (mismatch excision repair)
106543379 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
106543379 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
106543379
NCBI-ProteinID:
XP_013914861
UniProt:
A0A6I9XLL9
LinkDB
All DBs
Position
Unknown
AA seq
595 aa
AA seq
DB search
MYSERWVRFSSSIRPISTGNGPPRYRMLMSDGVNTLSSFMLATQLNPLVDDQSLITNAIC
QIDRFIVNTLKDGRRVVVLMEMEVLRPGHAVPAKIGNPVPYTEAAGQAERQPVATSAATS
PFPGKPAGPQRGSPDAGSSKLLGKAGSSGLLSTPGGSQVKVVPIASLNPYQSKWTICARV
TQKGQIRTWSNSRGEGKLFSIEMVDESGEIRATAFNDQVDKFFPLLELNKVYYFSKGNLK
TANKQYTSVKNDYEITFSNETSVVPCEDAGHLPSVQFDFVAIGDLESTSKDSLVDVIGVC
KSFEGTQTVTIKSSNREVCKRELHLVDTSGKTVTVTLWGADAEKFDGSRQPVVAIRGARV
SDFGGRSLSVVSSSTLLLNPDCPQAFKLRGWFDSEGQHQECVSISSGRGGLAPGGSSNWK
TLSEAKAENLGQGDKADYFSCVGTVVYLRKENCMYQACPTQDCNKKVVDEQNGLYRCEKC
DREFPNFKYRMILSANIADFQDNQWLTCFQESAEAILWQNTAYLGELKEKNEHAFDEVIQ
NANFTSHEFRIRVKLETFNDESRLKATAVEVKPINFSDYCQRLILNIRKNAARLG
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgtattcggagcgctgggtccggttttcgtccagcatccgccccatctccacggggaac
gggccccctcgctaccggatgctgatgagcgacggcgtcaacaccctctcctctttcatg
ctggccacccagctgaaccctctggtggatgaccagagcttgatcaccaatgccatttgc
cagattgaccgcttcatcgtgaacactctgaaggacggaaggcgagtggtggtcctgatg
gaaatggaggttctgcggccgggtcatgcggtccctgccaagattgggaatccggtgccg
tacaccgaagcagctggacaagcagagaggcagcccgtggccaccagcgcagcaaccagc
cctttcccagggaagccagcggggccccagagggggtctccggatgcaggttcttccaaa
ctgctggggaaggcggggagcagcggcctcctgagcaccccggggggctctcaggtcaaa
gtggtgcccatcgccagcctgaacccttaccagtccaagtggaccatttgtgcccgggtg
acccagaagggccagatccgcacctggagcaactcccgcggggaagggaagctcttctcc
atagagatggtggacgagagcggggagatccgagcaacggcctttaacgaccaagtggac
aagttcttccctctcctggagctgaacaaggtctactacttctccaaggggaacctgaag
acggccaacaagcagtacacctccgtgaagaacgactacgagatcaccttctccaacgag
acctccgtcgttccctgcgaggacgccgggcacctgccctccgtccagttcgactttgtg
gccatcggggacttggagagcaccagcaaggactccctcgtggacgtcatcggggtctgc
aagagcttcgaggggacccagacggttaccatcaagtcttccaaccgggaggtctgcaag
agggagctgcacctggtggacacgtcgggaaagaccgtgaccgtcactctctggggcgcg
gacgcggagaagtttgacggctcccggcagccggtggtggccatccggggggcccgagtc
tcggactttggggggcggagcctctctgtggtttcctccagcaccctcctgctgaacccc
gactgtccccaggccttcaagctgcgcggctggtttgactcggaagggcagcaccaggag
tgcgtctccatctcttcggggcgggggggcctggcgcccgggggcagctccaactggaag
accctgagcgaggccaaggcggagaacctgggccagggagacaaggcggactacttcagc
tgcgtgggcacggtggtgtacctgcgcaaggagaactgcatgtaccaggcctgccccacc
caggactgcaacaagaaggtggtggatgagcagaacggcctctaccgctgcgagaagtgc
gaccgggagttccccaacttcaagtaccgcatgatcctctcggcgaacattgcagacttc
caggacaaccagtggctgacctgcttccaggagtctgcggaggccatcctctggcagaac
acggcttacctgggggagctgaaggagaagaacgagcacgccttcgacgaggtcatccag
aacgccaacttcacctcccacgaattccgcatccgagtcaagctggagacattcaatgat
gagtcgcgcctgaaggccacggccgtggaggtgaagcccatcaacttcagcgattactgc
cagaggctgatcctgaacatccgcaagaacgccgcccggctcggctga
DBGET
integrated database retrieval system
