Thamnophis sirtalis (common garter snake): 106543443
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Entry
106543443 CDS
T06107
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106543443 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106543443 (XAB2)
03041 Spliceosome [BR:
tsr03041
]
106543443 (XAB2)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106543443 (XAB2)
Spliceosome [BR:
tsr03041
]
Complex B
Other components
Prp19-related factors
106543443 (XAB2)
Complex C
106543443 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_12
TPR_2
TPR_8
HAT_Syf1_CNRKL1_N
ARM_TT21_C
ARM_TT21
TPR_16
RPN7
TPR_7
TPR_1
Motif
Other DBs
NCBI-GeneID:
106543443
NCBI-ProteinID:
XP_013914939
UniProt:
A0A6I9XGW0
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MVSFTLQLSPENAEEYIEYLHSIDRLDEAAVRLAAVVNDERFVSKEGKSNYQLWHELCDL
ISQNPDKVKSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVM
TVRDFTQVFDSYAQFEESMIAAKMETNSEMGREEDDDVDLELRLARFEQLITRRPLLLNS
VLLRQNPHNVHEWHKRVKLYEGKPWEIINTYTEAVQTVDPFKATGKTQTLWVSFAKFYET
NGQIEDARTIFEKATKVNFKQVDELASVWCEYGEMELRHENYDQALRILRKATAIPAKKA
EYFDSTEPVQNRVYKSLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYGLF
LEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGC
PQKFAKTIYLLYARLEEEYGLARHAMAVYERATQAVLPAEQHDMYNIYIKRAAEIYGVTH
TRSIYEKAIEVLTDEHAQDMCLRFADMECKLGEIDRARAIYSYCSQMCDPRTTANFWQTW
KEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMASQMLKVYSNATGTVSDLAPGQSGMD
DMKLLEQRAEHLAAEAERDQPRAKEKILFVRSDASRSELAELSKQANPDEIDIDLDESDE
SEDNEPDEVQLEQKIVPSAVFGGLKDD
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggtttcttttacgttgcagctgagccctgagaacgcagaggaatatattgagtatctg
cactccattgaccgtctggatgaagccgctgtccgtcttgcagctgtagtgaatgatgag
cgttttgtttccaaggaggggaaatccaattatcagttatggcacgagctctgtgatctc
atctctcaaaatccagacaaggtgaagtcactcaacgtgggggccatcatccgaggtggc
ctaactcgtttcacagaccagttgggcaagctgtggtgttctttggcagattactacatc
cgcagtggccattttgagaaggctcgcgatgtgtatgaagaagctattcagacagtgatg
acggtacgggatttcactcaagtgtttgacagctacgcccagtttgaggagagcatgatt
gctgccaagatggagaccaactctgaaatgggacgtgaggaggatgatgacgtagatctg
gaactgcgtctggcacgctttgagcagctgatcacacggcgacctctgcttctcaacagt
gtcctcctgcgccagaatcctcacaatgtccatgagtggcataagagggtgaagctgtat
gaaggcaagccttgggagatcatcaacacgtacacagaagccgtgcagacggttgatcca
tttaaagccaccggaaagacacagacattgtgggtttcttttgccaagttctacgagaca
aatggacagatcgaagacgctagaacaatttttgaaaaggccactaaggtgaactttaag
caggtagatgaactggccagcgtctggtgcgagtatggggagatggagctgcggcatgag
aactacgatcaagccctgcgaattctgaggaaagctacagctatcccagctaaaaaagcc
gaatattttgattccacagagcctgtgcagaaccgtgtatataagtccctcaaggtttgg
tccatgctggctgacttggaagaaagtctcggcactttcaaatctactaaggctgtatat
gatcgcattttggaccttcgcattgccaccccacaaatcatcattaactatggtctgttc
ctggaagaacacaaatattttgaagagagcttcaaggcatatgagagaggcatctccttg
tttaagtggccaaatgtttatgatatctggaacacctatctaaccaaattcattgaccgc
tatggtggcaagaagttggagcgtgctcgggatctttttgagcaggccctggatggctgt
ccccagaaatttgcaaaaaccatctatctcttatatgccaggctggaggaggaatatggg
ctggcccgccatgccatggcagtatatgagcgagctacccaggctgtgctgcctgcagag
cagcatgatatgtacaacatctacatcaagagagcagctgaaatttatggcgtcacccac
acacgtagcatctatgagaaggcgattgaggtgctgacagatgaacatgctcaggacatg
tgcctgcgctttgctgatatggaatgcaaattgggtgaaatagaccgagctcgggcaatc
tattcctattgttcacagatgtgtgaccctcgaactacagccaacttctggcagacatgg
aaagaattcgagattcggcatgggaacgaagacactatccgagaaatgctgcgcattaag
cgaagtgtacaggctacttacaatactcaggttaacttcatggcttctcagatgctaaag
gtttacagcaatgccacaggcacagtgtctgacttggcaccaggacaaagcggcatggat
gacatgaagctcttagagcagcgagcagaacacctggcagccgaagcagaaagagatcag
cctcgagctaaggagaagatcttgtttgtcaggagtgatgcttcccgcagtgaattggct
gaactttccaagcaggccaatcctgacgagatagacatcgatttggatgaaagcgatgag
agtgaagacaatgagcctgatgaggtgcagctggaacagaagatcgtcccctctgctgtg
tttggtggccttaaagatgactga
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