Thamnophis sirtalis (common garter snake): 106543715
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Entry
106543715 CDS
T06107
Name
(RefSeq) protocadherin-23-like
KO
K16507
protocadherin-16/23
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tsr04515
]
106543715
Cell adhesion molecules [BR:
tsr04515
]
Cadherins
Cadherin related
106543715
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Fibulin_C
Cadherin_pro
Cadherin_4
Sde0182_C
CADH_Y-type_LIR
Motif
Other DBs
NCBI-GeneID:
106543715
NCBI-ProteinID:
XP_013915257
UniProt:
A0A6I9XMX3
LinkDB
All DBs
Position
Unknown
AA seq
1220 aa
AA seq
DB search
MIIRQSAIPEMEGGNTGGYFALHKTTGDLFTTRSLNRESVNNFTLVIECFDLGTPARSSA
MELQIRVLDENDNSPLFTRNHYQAIISEDIEENSSILELFALDADEGPNGKVVYTLMDEP
LGLFTINRTSGVVLTNKPMDRERQSQYIFKGIATDSDVRQPRSASVTIVVQIEDVNDNNP
FFLENPLKLQVSFQTPINQAIATVQSRDLDLGLNGTVKFRFVTPATILEMDSNTGEIFLK
EPVFYDGLFTHHLIMACDQGTPARTATAVVIISSKAHTEMISFSHTQYEAVVPENSEMGT
SVFTVAAHDHSLMENNVKYTIISEHEDIFYIHPITGKITVKHPVFLDYEVRKEVHFSVLA
ENGMASAVCGVTVFLQDINDNAPQLIVQAADKGIPGLFANCTIDIEVVDINDNAPTLQPF
DIIHLSESSLFLVKPLTYQFSHPEIHLLIEASDHGNPPLTAMTSVIVQIQAMNTYIPLFT
METYTFTISENASVGENLFTFSVNDQGRNHQGTNVVYSIIGGNNENKFYVKKLIFGPEYS
DQTIGNLVLRNTLDREKCSSYKLLILASDPKAAHLNSTATVSITILDVNDNPPVFTSLEY
HVHVREDVPVGSYITSVSAYDYDAGTNADVTYNIASGNDKGYFQLEGKTGSIHLIRALDY
EAATGFNLTVQASDGGIVPKNVAFAVVFINVLDANDYVPVFVFPNLKCGVQENMPAFSSV
CTISALDFDVGYLAYSIQSSCLPSHGNRGDRNLFIIDSLSGNIHTKQVLDFEHQIKYCFI
AQAKDKSNSTATITVWINVEGLDELDPVFNQDEYFFYFPEKHEAGQWIGDVKASDCDGGV
DGVIYYTLLGQSFFFSVNCSSGSVYLAGSIHKNRSSKKEKDGTFELLIKAHSPKQDSKSS
TCTVMVNIFNSPETYPTLPAANLSVSIAISIIVLLFLAICLAVLIGRYILKDTCKYSLKK
EMPCPSVIDLNMHRQKNSSKHFQEPQIHGTTILPLGSTADWLDLIGTRDKRNIDSFCVQS
NSHSHGPIEEKIGENVELKTINEHLTRKGTRSALSDKCSFIPDSGISRDSDPFSCQSGEN
KIMYISQNTEALHYFRELLWNKMVSHTLAKVTVKEIEIMTDLTMEYIEAPGSKDLVTPLD
SVKDLGENHNWNCLLNWEPSFKPLASVFSEIAELQDESIEIHNFPKGDKSFIFPPLLAST
AQPDLKSYFSQLPTSLPDAF
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgattatccgacaatcagcaattccagagatggaaggtgggaataccggaggatacttt
gctttgcacaaaactacaggagaccttttcactactcgcagtttgaacagagagagcgtc
aacaattttaccttggtcatagagtgttttgatctaggcactccagcaagaagttctgct
atggaactacaaatcagagtcctggatgaaaatgacaacagtcctttatttacaagaaat
cattaccaagcaattataagtgaagatattgaagaaaactcatcaattcttgaactgttt
gctttagatgcagatgaaggtccaaatggaaaggttgtgtacactctaatggatgaacct
cttggattgtttactattaacagaactagtggtgttgtccttactaataaaccaatggac
cgagagagacaatctcaatatatatttaaaggtatagcgacagattccgatgtccggcaa
cccagaagtgccagtgttactatagtagtacagattgaagatgtcaatgacaataatcct
tttttcttagagaatcctcttaaacttcaagtatcctttcaaacacctataaatcaggca
atagcgactgtgcaatccagggatttagatttaggtctgaatggaacagtgaagtttcgg
tttgtgacaccagccacaatacttgagatggattcaaatacaggtgaaatatttcttaag
gaacctgtattttacgatggcttattcacccaccacctgataatggcatgtgatcaaggg
accccagctagaactgctacagctgttgtgatcatctcttctaaagcccacacggaaatg
atttctttcagtcatactcagtatgaagcagtggttcctgaaaacagcgaaatgggtact
tctgtttttactgttgctgctcatgaccacagtttgatggaaaacaatgtaaaatataca
atcatcagtgaacatgaggatattttctatattcatcccatcacaggtaaaattacagta
aaacatcctgtctttcttgactatgaagtcagaaaggaagtgcatttttcagttttagct
gaaaatggcatggcttcagcagtgtgtggtgtgacagtattcttacaggacattaatgat
aatgcacctcagttgattgtacaagctgctgacaaaggaatccctggactatttgctaat
tgcacgatagacatagaagttgtggacatcaatgataatgctccaactctgcagccattt
gatattatccatctctctgaaagttcactgtttcttgttaagccactgacttatcagttc
agtcacccagagattcatctccttatagaagccagcgaccatgggaatcctcctttgact
gctatgacttctgttatagtgcagatacaggctatgaatacatacattcctctgtttaca
atggaaacctatacttttactataagtgaaaatgcttcagttggggagaacctgttcaca
ttctcagttaatgaccaaggtagaaatcatcaaggcaccaatgttgtgtattccatcatt
ggtggcaataacgagaataaattctatgtgaaaaagctcatatttgggccagaatattca
gatcaaacaattggaaatcttgttttgaggaacaccctagatcgagagaaatgttcatct
tataagttgttaattcttgcatctgatcctaaagctgctcatctaaattccactgctacc
gtgtcgattactattttagatgttaatgacaatccacctgtatttacaagtttggaatat
catgttcatgtcagggaagatgttccagttggtagttacattacttcggtgtcagcatat
gattatgatgccggaaccaatgcagatgtcacttacaacatagcctctggaaatgataaa
gggtacttccagctagaaggtaaaactggctcaatacatctgatcagagctctagattac
gaggctgctacgggattcaacttgacggtccaagcttctgacggaggaatagttccgaaa
aatgtggcgtttgctgttgtttttatcaatgtcctggatgctaatgattatgtccccgta
tttgttttcccaaacctcaagtgtggtgtacaggaaaatatgcctgcgttttcctctgtt
tgcacaatttctgcactagattttgatgttggttatcttgcctactctatccagtcatct
tgcttgcctagtcatggaaatcgtggagatcgtaacctgtttataatagattctttgtct
ggaaatatccacaccaagcaggtgcttgactttgaacatcagattaagtactgtttcatt
gcacaggcaaaagataaaagcaattccacagctaccattactgtttggattaatgttgaa
ggattagatgaacttgaccctgtgttcaaccaagatgaatatttcttttattttcccgag
aagcatgaagctgggcagtggattggtgatgtaaaagcgtcagactgtgatggtggagtg
gatggtgtcatttattatactttgttaggacaatctttcttcttttcggtgaactgtagc
agtgggtctgtttatttggctggatctattcacaaaaacagaagcagcaagaaggagaaa
gatggcacttttgaacttctaataaaagctcatagtccaaagcaggactcaaagtccagc
acctgcacagttatggtaaacatttttaatagcccggagacctatcccacattgccagca
gctaacctgtctgttagcattgccatctctatcatagtacttttgttcttagccatctgc
cttgctgtgcttattggtagatatatactaaaagatacctgcaagtatagcctgaagaaa
gagatgccatgtccctcagttatagatctaaacatgcatagacaaaagaactcatctaaa
catttccaagaaccccaaatccatggaacaactattcttcctttagggagcacagctgat
tggctggatttgattggtaccagggataaaagaaatattgatagtttttgtgtacaatcc
aactcacatagccacggaccaatagaagagaaaattggagaaaatgtggaactaaaaaca
attaatgaacaccttactaggaagggtacgagatctgctttaagtgacaaatgctcattt
ataccagattcaggaatttcaagggattctgatccgttttcatgtcagtctggagaaaat
aagattatgtacatttctcaaaacacagaagctctccattacttcagagaactactctgg
aacaaaatggtgtcccacacacttgcaaaagtgacagtcaaagaaattgagataatgact
gatctcacaatggaatatatagaagcacctgggagcaaggatcttgttaccccattagac
tctgttaaagatcttggagagaatcataactggaattgtttgctgaactgggaacccagc
tttaagcctcttgcttctgtgttcagtgaaattgcagaactgcaggatgaaagtatcgaa
atacataattttcctaaaggggacaaatctttcatttttcctcctttgcttgcttctaca
gctcaacctgatttaaaatcatatttctcacaactgccaacttcattgccagatgcattt
taa
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