KEGG   Thamnophis sirtalis (common garter snake): 106543757
Entry
106543757         CDS       T06107                                 
Symbol
TAF5L
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
tsr  Thamnophis sirtalis (common garter snake)
Pathway
tsr03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106543757 (TAF5L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tsr03021]
    106543757 (TAF5L)
   03036 Chromosome and associated proteins [BR:tsr03036]
    106543757 (TAF5L)
Transcription machinery [BR:tsr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     106543757 (TAF5L)
   Coactivators
    SAGA/TFTC/STAGA complex
     106543757 (TAF5L)
Chromosome and associated proteins [BR:tsr03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     106543757 (TAF5L)
    STAGA complex
     106543757 (TAF5L)
    TFTC complex
     106543757 (TAF5L)
    SAGA complex
     106543757 (TAF5L)
    SLIK complex
     106543757 (TAF5L)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd EIF3I TFIID_NTD2 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_Aladin Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_WDR41 Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_SPT8 Tricorn_2nd Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_WDR19_1st Ge1_WD40 PEP5_VPS11_N DUF7165 PROPPIN eIF2A WD_LRWD1 Beta-prop_IP5PC_F Mala_s_1-like Nbas_N
Other DBs
NCBI-GeneID: 106543757
NCBI-ProteinID: XP_013915309
UniProt: A0A6I9XHV0
LinkDB
Position
Unknown
AA seq 589 aa
MKRVRTEQIQMAVNCYVKRRQYVDSEGPLKQGLRLCHTAEEMAANLTVQSESGCTNVISA
APCLAEPQQYEVQFGRLRNFLTDSESQHSQEVMPLLYPLFVYLHINMVQNGLKSTVDSFY
SRFHGMFLQNASQKDIIEQLQTTLTIQDILSNFKLRAFLDNKYVVRLQEDSYNFLLRYLQ
SDNNSALCKVLSLHIHLDVQPAKRVDYQLYASGGSSRSESNGLEPTDMPASILQNEAALD
LLQDSIKRVKDGPPSLTTICFYAFYNTEKLLNTAAISPNGKLLAAGFDNSCVKLWSLRPK
KLKSEPHLVDVSRIHLACDILDEEAEDDDDIGTEMKLLRGHSGPVYSTSFLSDSSGLLSC
SEDTTIRYWDLGCFTNTVLYQGHAYPVWDLDISPCSLYFASASQDRTARLWSFDRTYPLR
IYAGHLADVDCIKFHPNSNYLATGSTDKTVRLWSTQQGNTVRLFTGHRGPVLSLAFSPNG
KYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIR
NTYCNAPVDGSSSELVGIYTGQISNVLSVQFMACNLLLVTGIAQENQEH
NT seq 1770 nt   +upstreamnt  +downstreamnt
atgaaacgtgtacgcaccgaacagattcagatggctgttaactgctatgtcaaacgcagg
cagtatgtagactcagaaggtcccctgaaacaagggctgcgcttatgtcacacagctgaa
gaaatggcagctaatctaacagtacaatctgaatcgggttgtacaaatgtgatttctgct
gcaccctgcttagcagagccccaacaatatgaagtacagtttgggcggttgcgcaacttt
ctgacagattcagaatcccagcatagtcaggaagtgatgcctctcctgtaccccctcttt
gtctacctccatatcaacatggtccaaaatggcctaaagagcacagtggacagtttctac
agtcgcttccatgggatgttcttacagaatgccagccagaaagacatcattgaacagttg
caaactacattaacaattcaagacatcctgtccaatttcaagcttcgggcatttctggac
aataaatacgtggtccgccttcaggaagacagctacaacttcctcctccgctacctccag
agtgataataacagtgctctctgcaaagtcctatccttgcatattcacctagatgtgcag
cccgccaagagagtggactaccagctctatgctagtggtggctcttcacgcagtgagagc
aatggcctggaacctactgatatgcctgcttccatcctgcagaatgaagcagccttggac
ctcctgcaagatagcattaaaagagtcaaagatggcccaccatcccttactaccatatgt
ttctatgcattctacaatactgagaagttgctgaatacagcagcgatctcgccaaatggc
aagctgctggctgctggttttgacaattcctgtgtaaaactgtggagtttgcggcccaag
aagctgaaatctgagcctcacttagtagatgtttcccgaattcacttggcctgtgatatc
ttggatgaagaggctgaagatgatgatgatataggaactgaaatgaagttattaagaggg
cactctggaccagtgtatagcacaagttttttgtcagacagctcaggattgctgtcatgc
tctgaagatacaactatcagatactgggatcttggatgttttacaaacactgtcttgtac
caaggacatgcttatccggtgtgggacctggacatcagcccttgcagcttgtactttgct
agtgcttctcaggaccgtacagccagactctggtcatttgatcggacgtatcccctacgg
atatacgcgggccatttagcagatgtcgactgcatcaagtttcatccaaattctaactac
ttggcaacaggatctacagacaaaacagtgcggctctggagtacccagcaaggaaacaca
gtacgtctgtttacaggtcaccggggtcctgtcctgtcccttgccttttctcccaatggt
aagtacttggcctcagcaggtgaagaccagcgcttaaaattgtgggacttggcatctgga
acgctttacaaagaactgcggggccatacagataatatcaccagccttacttttagtccg
gatagtagtttgattgcttctgcatcaatggacaactctgttcgagtctgggatattcga
aacacttactgcaatgctcctgtagatggctcttccagcgagctagttggaatatatact
ggacagatcagtaatgtactgagtgtacagtttatggcctgcaaccttcttttagtgact
ggaattgcacaagagaatcaggaacattag

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