KEGG   Thamnophis sirtalis (common garter snake): 106543940
Entry
106543940         CDS       T06107                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
tsr  Thamnophis sirtalis (common garter snake)
Pathway
tsr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tsr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106543940 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tsr03041]
    106543940 (SNRNP40)
Spliceosome [BR:tsr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    106543940 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    106543940 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_SPT8 ANAPC4_WD40 Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR75_2nd eIF2A Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_HPS5 Beta-prop_RIG_1st Beta-prop_IFT140_2nd Cytochrom_D1 WDR54 WD40_like PROPPIN Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 106543940
NCBI-ProteinID: XP_013915521
UniProt: A0A6I9XNQ7
LinkDB
Position
Unknown
AA seq 346 aa
MALVAAAAAAKKPRHELILGPGPGAGQPPPGALLQAGPPRCSSLQAPIMLLSGHEGEVYC
CKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDK
TVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQ
NTYQVLAVTFNDISDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSAEGSYLL
SNAMDNAVRIWDVRPFAPKERCVKILQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVYV
WDTTSRRILYKLPGHAGSINEVAFHPEEPIVLSASSDKRLYMGEIQ
NT seq 1041 nt   +upstreamnt  +downstreamnt
atggctctggtggcggctgctgctgctgctaagaaaccccgccatgagctcatcttgggg
ccgggccccggagctgggcaaccgcccccgggggccttgttacaggcgggccccccaaga
tgttcctcattgcaagcacccataatgttactttctggtcacgaaggagaggtttattgt
tgcaagtttcatcctaatggatccaccttagcctcagctgggttcgacaggttgatactc
ctatggaatgtgtatggtgactgtgataattatgccactttgaagggccacagcggcgca
gttatggaattacattacaacactgatggcagcatgctgttctcagcctcgacggataaa
acagtagcagtgtgggatagtgagacaggagagagagtgaaaagacttaaaggacacact
tcatttgtcaactcctgctatccagcaagacgtggacctcagctggtttgcacaggcagt
gatgatggcacagtgaagctctgggatatcaggaagaaagctgctgttcaaacctttcag
aacacctatcaagtattagctgtgaccttcaatgacatcagtgatcagataatatctggc
ggtatcgacaatgatatcaaggtatgggaccttcgtcagaacaagctaacttacacaatg
agaggacatgcggattctgtcaccggtctcagcctaagtgcagagggctcttacttgctt
tccaatgcaatggacaatgcagttcgcatctgggatgttcggccttttgctcccaaagaa
agatgtgtgaagatactccaagggaacgtgcataattttgagaagaaccttttgcgatgt
tcctggtccccggatggaagtaaaatagctgctggatctgcagacaggtttgtttatgtg
tgggatacaacctccagaagaatcctctacaaacttccaggccatgcaggttcaataaat
gaagtggcgtttcatccagaagaaccaatagtactttctgcatctagtgacaaaagactg
tatatgggagagattcaatga

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