Thamnophis sirtalis (common garter snake): 106543970
Help
Entry
106543970 CDS
T06107
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03013
Nucleocytoplasmic transport
tsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106543970 (UPF1)
03015 mRNA surveillance pathway
106543970 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106543970 (UPF1)
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106543970 (UPF1)
5.6.2.5 RNA 5'-3' helicase
106543970 (UPF1)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106543970 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
106543970 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
106543970
NCBI-ProteinID:
XP_013915574
UniProt:
A0A6I9XII1
LinkDB
All DBs
Position
Unknown
AA seq
1139 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGGSGSGGGVVV
PGTPGLPGGGVGVGAGGAPSVVAPGQLDAQVNGPDGILQNGAVDDNVPKTSQLLAELNFE
EDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCK
EVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDS
SQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVD
EEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFT
LPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDTFVDYGDEIAIELRSSVGAPV
EVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRF
TAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS
NIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDE
TGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATE
PECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYR
MHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTS
YLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEI
ASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQP
LWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIP
GSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVTTMNIPIPFNLVMPPMPPPGYFGQPNG
PAAGGMFAGRGNLKGKTGRGGRQKNRFGIPGASQSNLPNSQASQDVVSQPFSQGPLTQGY
ISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcctacgggcccagttcgcagacgttgactttcctcgacaccgaggag
gccgagctgctgggcgctgacacgcaaggctccgagttcgagttcaccgacttcaccttg
cccagccagactcaaacgccgcccggaggaggctccgggagcggaggaggcgtcgtcgtg
ccagggaccccgggactcccggggggtggcgtcggagtgggcgcagggggggcgccttcc
gtcgtcgctccgggacagctggatgcccaggtaaatggaccagatggcatcctccagaat
ggggcagtggatgataatgtgcctaaaaccagccaacttcttgctgagctcaattttgaa
gaagatgaggaagacacttattacaccaaggacctgcctgtacatgcctgcagctattgt
ggcatccatgatccagcttgcgtggtctattgtaacaccagcaagaagtggttctgcaat
ggacgtgggaatacctctggcagtcacattgtgaaccatcttgtgagagccaagtgcaaa
gaagtgactcttcataaggatggtcctctgggcgagactgtcttggaatgctacaattgt
ggctgccgtaatgtgtttcttcttggcttcatcccggccaaagctgactctgtggtcgtt
ttgttatgcaggcagccttgtgccagccagagcagcttaaaggacatcaattgggacagc
tcacagtggcagcctttgattcaggatcgctgcttcctttcctggctagtcaaaattcct
tcagaacaggaacaactgagggcccggcagatcacagctcagcaaattaataaactagaa
gaactgtggaaggagaacccatctgccactttggaggacctggaaaagcctggggttgat
gaagagccacagcatgtcctccttagatatgaagatgcttatcaataccagaacatcttt
ggtcctctggtcaagcttgaagcagactatgacaagaaattgaaggaatctcagactcaa
gacaacattactgtgagatgggatcttggtttgaacaagaaaaggattgcctacttcacc
ctgccaaagactgattcagatatgcgtttgatgcaaggggatgagatctgcctgagatac
aaaggagacttggccccactgtggaaaggaattggccatgtgattaaagttcctgatact
ttcgtagattacggtgatgaaattgcaattgagttgagaagtagtgttggtgctcctgtg
gaagtgactcacaatttccaagtggattttgtatggaaatcaacatcctttgatagaatg
cagagtgccctaaaaacatttgctgtggatgaaacatcagtttctggctacatctatcac
aaacttctgggtcatgaggtggaagacgttataattaaatgtcagttgccaaagcgcttc
acagcacaaggacttccagatctcaaccattctcaggtgtatgcagtgaagactgttttg
cagcgtcccttgagtcttattcagggcccccctggcacaggcaagactgtgacatcagcc
acaattgtgtatcacctggcaaggcaagggaatgggcctgtgctggtttgtgccccaagt
aacattgctgtggaccagctgaccgaaaaaatacatcagacggggctgaaggtggtgcgt
ctgtgtgcaaagagccgcgaggccattgattcacctgtctctttcttagcactgcataac
cagatcaggaatatggatagcatgccagagctccagaaactgcagcaactgaaagatgag
actggggaactgtcatccgctgatgagaagcgctaccgagcacttaaacgaacagctgaa
cgggaattgctaatgaatgcagatgtcatttgctgcacatgtgttggagctggcgaccca
agacttgctaaaatgcaatttcgttccattttgattgatgaaagcacacaggccactgag
ccagagtgtatggtgcctgttgttcttggggcaaaacagttgatcctggtgggcgatcat
tgccagcttggccctgtcgtaatgtgcaagaaggcagctaaagcaggtctgtcgcagtcc
ctctttgagcgactggtggtgttgggcattcggcccattcgcctgcaagtccagtaccgc
atgcacccagccctgagtgcttttccttccaacatcttttacgaagggtcacttcagaat
ggtgtcactgcagcagaccgtgtgaagaaggggtttgacttccaatggcctcagccagac
aagcccatgtttttctacgtgacccaaggacaagaagaaattgcaagttctggcacttct
tatttgaacagaacagaggcagccaatgtggagaaaataaccacaaagctactgaaggct
ggtgcaaagccagatcagattggcatcatcaccccctatgagggccagcgttcatatttg
gtgcagtacatgcagtttagtggatctttgcataccaagctttatcaggaagttgaaatc
gctagtgttgatgctttccaagggcgagagaaggacttcattatcctctcctgtgttaga
gccaacgagcatcaaggcattggtttcctgaatgatccccggcgtctcaatgtggctctc
acaagagcaagatatggggtcattattgttgggaatccaaaggcactctccaagcaacct
ctctggaatcaccttctgaactactacaaggagcaaaaggtcctggtggagggaccattg
aacaatctccgtgagagcctcatgcagttcagcaaaccccgaaaactggtcaacactatc
aatccaggagcccggtttatgacaactgctatgtatgatgcccgtgaagctattatccct
ggatccgtttatgatcgcagcagccaaggccggccatccaacatgtatttccaaacacac
gatcagattgggatgatcagtgctgggcccagtcatgtcaccaccatgaacattcctatt
ccattcaacttggtgatgcctcccatgccaccaccagggtactttggacagcccaatgga
ccagctgcaggtgggatgtttgcaggacgtggaaacctgaaaggcaaaactggccgtggt
gggcgacagaagaaccgttttgggattccgggagccagccagtcgaacctccccaacagc
caggccagccaagatgtggtctcccagcctttctctcagggccccttgactcagggttac
atctccatgagccaaccctcacagatgagccagcctggcctctcccagccagaattgtca
caggatagttaccttggtgatgagtttaaatctcagattgatgtggccctgtcgcaggat
tcaacttaccagggggaacgcgcatatcaacatggagtgacggggctgtcacagtattag
DBGET
integrated database retrieval system
