Thamnophis sirtalis (common garter snake): 106544275
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Entry
106544275 CDS
T06107
Name
(RefSeq) LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03013
Nucleocytoplasmic transport
tsr03015
mRNA surveillance pathway
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106544275
09122 Translation
03013 Nucleocytoplasmic transport
106544275
03015 mRNA surveillance pathway
106544275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106544275
03041 Spliceosome [BR:
tsr03041
]
106544275
Enzymes [BR:
tsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106544275
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106544275
Spliceosome [BR:
tsr03041
]
Complex C
Other components
EJC/TREX
106544275
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106544275
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
106544275
NCBI-ProteinID:
XP_013915986
UniProt:
A0A6I9XQB7
LinkDB
All DBs
Position
Unknown
AA seq
448 aa
AA seq
DB search
MTENDVDNELLDYEDDEVETQAAGEGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTLHEKQVMMFSATLGKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYLSEEAXKKNLKKVIGVPXGXLSSSFAQVVIFVKS
VQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV
NIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPD
EIDISSYSESVLPISPPLTITTTKVCVN
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaccgagaatgatgttgacaatgagctgctggattatgaagatgatgaggtggaaacc
caagcagctggagaaggggtagatgtcccatctaagaaagacgtcaagggatcctatgtc
tccatccacagttctggcttccgtgatttcctattaaaaccagaactcttgcgtgccatt
gttgattgtggctttgagcacccttcagaagtgcaacacgagtgcatcccacaggcaatc
ttgggcatggatgtcctgtgccaggccaagtctggcatgggcaagactgctgtctttgtt
ctcgctacacttcaacagttggaaccaataacaggacaggtttctgtactggtgatgtgt
cacacgcgtgaactggccttccagattagtaaagaatacgaacggttctccaagtacatg
cccagtgtcaaggtagcagtgttctttgggggcctgtccatcaagaaggatgaagaggtt
ctgaagaagaactgcccccacattgtggtggggaccccgggccgcatcctggctttggcc
cgcaacaagagccttaacctcaaacatatcaagcatttcatcctggacgaatgtgacaaa
atgcttgagcagcttgatatgcgtcgagatgtccaggagatcttccgcatgaccctgcat
gaaaagcaggtcatgatgttcagtgctactctcggcaaggaaatccgccccgtgtgccgc
aaattcatgcaagaccctatggagatcttcgtggatgacgagaccaagctgacgctgcat
ggtctgcagcagtactatttgtccgaggaggcttaaaaaaaaaacctaaagaaggtgatt
ggtgttccttagggttgactttcctcttcctttgcccaggtggtcatctttgtgaagtcc
gtgcagcgttgcatagctctggctcagcttttggtggaacagaactttccagccattgcc
atccataggggcatgccgcaggaggagagattgtcgcggtaccagcagttcaaggatttc
cagcgtcgtatcttggtagccaccaatctctttggccgtggcatggatatcgagcgagtc
aacatcgctttcaactacgatatgccagaggattcggacacttatttgcaccgggtggct
cgtgctggccgctttggcacaaagggcctggcaatcacttttgtgtccgatgagaacgat
gctaagatcctaaatgaagtgcaggatcgctttgaagtgaacatcagcgaactgcctgac
gaaatcgatatctcctcctacagtgagtctgttttaccgatttctcctccactgacgatc
acaacaacaaaagtttgtgttaactaa
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integrated database retrieval system
