Thamnophis sirtalis (common garter snake): 106544514
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Entry
106544514 CDS
T06107
Symbol
FN1
Name
(RefSeq) fibronectin
KO
K05717
fibronectin 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04510
Focal adhesion
tsr04512
ECM-receptor interaction
tsr04810
Regulation of actin cytoskeleton
tsr04820
Cytoskeleton in muscle cells
tsr05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106544514 (FN1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106544514 (FN1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106544514 (FN1)
04810 Regulation of actin cytoskeleton
106544514 (FN1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
106544514 (FN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106544514 (FN1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsr04147
]
106544514 (FN1)
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106544514 (FN1)
04990 Domain-containing proteins not elsewhere classified [BR:
tsr04990
]
106544514 (FN1)
Membrane trafficking [BR:
tsr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
106544514 (FN1)
Exosome [BR:
tsr04147
]
Exosomal proteins
Exosomal proteins of bladder cancer cells
106544514 (FN1)
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106544514 (FN1)
Domain-containing proteins not elsewhere classified [BR:
tsr04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type I domain-containing proteins
106544514 (FN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
fn1
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
fn2
Fn3_Dep-1_2nd
Fn3_Dep-1_4th
FN3_Tor_3rd
Motif
Other DBs
NCBI-GeneID:
106544514
NCBI-ProteinID:
XP_013916282
UniProt:
A0A6I9XQG0
LinkDB
All DBs
Position
Unknown
AA seq
2277 aa
AA seq
DB search
MRLDGNVDYIKKSSICPRGYNHHEWVQTVEIAQLYGLFFSIDRCNDQDTKRSYRIGDTWS
KKDNRGNLLQCICTGNGRGEWKCERHSSLQATGIGSASATITDVRTALYQPQPQPAPSGH
CATDSGMMYILGMQWLKTQGSQHMLCTCLGNGISCQETAVTQTYGGNSNGEPCVFPFTYH
GKTFYSCTSEGRQDGNLWCSTTSNFDQDKSYAFCTEQNVLVQTRGGNSNGALCHFPFLYN
NRNYTDCTSEGRRDNMKWCGTTSNYDVDEKFGFCPMAAHEEICTTNEGVMYRVGDQWDKQ
HDMGHMMRCTCVGNGRGEWTCIAYSQLRDQCIVDGVTYDVNQTFHKRHEEGHMLNCTCFG
QGRGRWKCDPIDQCQDSESQTFYQIGDSWEKHAHGVRYQCYCNGRGIGEWHCQPLNTGSA
GHPVQVIVTDVPIQPDSHPIQWIAPESSHVSNYILRWKPKNSGVRWKEARIPGYLNSYTI
SGLKPGVLYQGQLISVQNYGQKEMTRFEFTTSSTTSISSSRVTGETTVLPSVVSISESVT
EITANSFVVSWVSASDTVSGFRVEYELSEDGDEPKYLDLPNTVNSVSIPNLLPGRNYIIK
VYQISEEGEQDLILSTTQTTAPDAPPDHLVENVDDTSILVSWSRPEAPITGYRIVYTPSL
EGSSTELNLPESATSVTLSDLMPGVQYNISIYAVEENQESAPIFIQQKTTGVLMADEIHP
PQDLQFLEVGSDKITIMWRAPESAVAGYRVEVIPINRPGEHGQRLPISRHTFAEVTELLP
GTTYLFKIYAVGQNTESEPLTGEQTTKLDGPTNLRIVSETPSTALVTWKPPRARIAEYHL
TLQPIPDGLPKQYTVGPSAAKYLLRNLQPGSEYTVSLVAVKGHQKSNPEKGTFTTLQSAG
PVPPYNTEVTETSIIVTWIPAPRLGFKLGVRPSQGGEAPREVISESGSIVISGLTPGVEY
IYSINVIKDGQERTTPIVKTVITPPSPPTNLHLDSNSDTGFLTVSWEKSTTPDITGYRIT
TVPTNGQEGYTLEEQVKAEDTSCVFENLSPGVQYNVSVYTLKDNQESLPISETITQEVPQ
LTDLNFVDVSDTSIGLKWTPINTSAIIGYRIKVIATGETVPIFEDFVDSSVGYYMVTGLE
PGIDYEISVITLINGGESAPTTLIQQTAVPPPTDLRFTNVGPDTIRVTWTPPASVELSSF
LVRFSPMKNKDDVAELSISPSDSAVVLTNLLPGTVYLVKVYSVYEQHESKPLSGEQKTGL
DSPTGLDFSEITAHSFTVHWIAPRSPISGYKIRHHLEQGGSRPKEVRVAPSRNSITLTDL
IPGSEYVVSVSAFYGKEESLPLIGQQSTVSDVPRDLQVTATGPTSLVVSWDAPAVTVRYY
RITYGETGGSGPAQEFTVPGHVSTAPISDLKPGVDYTITVYAVTGRGDSPASSKPVSVNY
QIEVDTPSQLQVTDVQDNSLTVKWQPSSSPVTGYRVTAAPKDGHSPTKTRVLSAEQTEVT
IDELQPTAEYVVSVYAQGPNGESQPLVEKVVTNVDPPKGLAFTAVDVDSIKIAWESPQGQ
VTGYRVTYSTPEDGIQELFPAPEGEDETAELHGLRPGSEYTVYIVALHNDLESLPLIGTQ
TTAIPPPTNLKFIQVAPTSLTLTWTAPNVKLTGYRVRINPKEKTGPMKEINLAPDSTSAV
ISGLMVATKYEVNIYALKDSLTSRPTQGVVNTLENVSAPRRARVTDVTERTITITWRTKT
EAITGFQIEAVPAGGQNPIQRTISPDVRTYTVTGLQPGTDYKIFIYALNENARSSPAELD
ASTAIDAPSNLRFLTTTSNSLLISWQPPRAKITGYMIKYEQVGGPTRELIPRPRPGITEA
TITDLEPGTEYIIYIIAVKNNQKSEPLTGRKKTDELPRLVTPPHSGKKMTEILDVPSVLE
NVPYLTNNPYDNGNGIPIPGSSGQQPILSNPGQQVIVEEFASRTSPTPATPDREEQPVVL
IHHPFQVPDVDKPSYHHTLLSKDNYTRPQEALSRTTISWTPYTDSSEYIISCQPVSAEEE
PIEIKVPGEYSSATLMGLTRGATYNIIVEAVENRRRHRVLEETVTVGNDVSERLSPPTDD
VCYDTFTGSFYSIGDEWERLSDTGFKLWCQCLGLGSGHFRCDSSKWCHDNGMNYKIGEKW
DRHGENGQVMSCTCLGNGKGEFKCDPHEATCYDDGKMYHVGEQWQKEYLGAICSCTCYGG
QQGWRCDNCRRPGASEGSPSQTYLQREQQSPNTNIHCPIECFYPLHLQSDAQNQRGD
NT seq
6834 nt
NT seq
+upstream
nt +downstream
nt
atgagactagatggaaatgttgactacattaaaaaatccagtatctgtccaagaggatat
aaccatcatgaatgggtacagactgttgaaatagcacagctgtatggactcttcttttct
atagatagatgcaatgatcaagacaccaagagatcttatcgaattggagatacctggagc
aagaaggataacagaggaaatctccttcagtgcatctgcacagggaatggcagaggggaa
tggaaatgtgaaaggcattcctctttacaagccacaggcatcggcagcgcatctgcaact
atcacagatgtacggactgcactctaccaaccgcagccccagccggctccttctggacat
tgtgcaactgacagtggcatgatgtatattttgggaatgcagtggcttaagacacaggga
agccagcatatgctatgtacttgtctgggcaatggaatcagctgccaggaaacagctgtg
acccaaacgtacggtggcaattccaatggagagccttgcgttttcccattcacctatcat
ggaaagactttctattcgtgcacttccgaaggacgtcaggatgggaatctctggtgcagt
acaacctccaacttcgaccaggataagagctacgctttttgtacagagcaaaatgtgttg
gttcagacgcgtggtggaaattccaatggtgccctgtgtcacttccctttcctttataat
aatcggaattacactgattgcacttctgaaggacgaagggataacatgaagtggtgtgga
actacctcaaactatgatgttgatgaaaagtttggattttgtcccatggcagctcacgaa
gaaatttgtacgacaaatgagggtgttatgtatcgtgttggagatcagtgggacaaacag
catgatatgggccatatgatgagatgcacgtgtgtgggaaatggacgtggagaatggacc
tgcattgcatattcccagctcagagatcagtgtatagttgatggggtcacatatgacgtt
aatcagacttttcacaaacgtcacgaagaaggacacatgctgaactgtacgtgtttcggc
caaggtcgtgggagatggaagtgtgatcctattgaccagtgccaagattcagaaagccag
accttttaccagattggggattcgtgggagaagcatgctcatggagtgagatatcagtgt
tactgtaatggccgaggtattggagagtggcactgccagcctttgaacacaggctccgct
ggtcaccctgtgcaggtgattgtcacagatgtcccaattcaacccgattcccatcctatc
cagtggattgcacccgagtcctctcacgtttccaattatattcttcgctggaaaccgaaa
aattctggagtgcgatggaaggaagctagaattccaggctatttgaattcctacacaatc
tcaggcctgaaaccgggtgtcctttaccaggggcagctgataagcgtccagaattacggt
cagaaagaaatgacccgctttgaattcactacctctagtacaacatctatatcatctagc
cgtgtgacgggagaaaccaccgtccttccctccgtcgtctctatttccgaatctgtcacg
gaaatcacagccaacagctttgtggtctcttgggtttctgcctcggacaccgtctcagga
ttccgtgtggaatatgaactgagcgaagatggggatgaacctaaatatcttgatcttcca
aatacggtcaattcagttagcattcccaacttacttccgggtcgtaactacattatcaaa
gtctatcaaatttcagaggaaggagagcaagatctaattctttcaacaacacagacaaca
gcacctgatgctcctccggatcatcttgtagaaaatgttgatgatacttcaattcttgtc
agctggagcagaccagaagcgccaatcacaggttaccggattgtttatactccttcgctg
gaaggaagcagcacagaactcaatctcccagaatctgcaacatctgtgacactcagtgac
ttgatgcctggtgttcaatacaatatcagcatttatgctgtggaagaaaaccaggaaagt
gctcctatcttcattcagcagaaaaccaccggagtcctaatggcagatgagattcatcct
ccccaggaccttcaatttttggaagttggcagtgacaaaataaccatcatgtggcgcgcc
cctgaaagtgcagtggctggttatcgtgtagaggttattccaattaaccgccctggggaa
catggccagaggttacccattagcagacacacatttgctgaggtcacagaacttttgcct
ggaacaacgtaccttttcaagatctacgctgtaggacagaacacggagagtgaaccatta
actggagaacaaacaacgaaacttgatggcccaaccaatttgcggattgtcagtgagaca
ccctctactgcgctggtcacatggaagcccccgagagcccgtattgcagaataccacctt
actctgcagcctattccagatggtcttccgaaacaatacactgtggggccgtcagccgcc
aaatacctgctgaggaacttgcagcctggctctgagtatactgtgtctctcgtggctgtc
aagggtcatcaaaagagcaatccagaaaagggaaccttcacaacactgcaatccgcagga
ccagttcctccgtataacaccgaagtaacggagacttccattattgttacctggatacct
gcacctagacttggttttaagctaggagtgagacccagccaaggtggagaagctccaagg
gaggtcatctcagaatctggaagcattgttatatctggcctaactcctggggtagaatat
atctacagcattaatgttattaaggatggtcaagaaagaacaacgcctatcgtcaagaca
gtaatcacaccaccatctcctcccacaaacttgcatcttgattctaactctgacactgga
ttccttactgtttcttgggaaaaaagcaccactccagatatcactggatacagaattaca
acagttcctacaaatgggcaagaaggctacactctggaggagcaagtgaaagcagaagat
acatcctgcgtttttgaaaatttgagtcctggtgtgcaatacaatgtcagtgtttacacc
ctcaaagataatcaagagagtttgcccatctccgaaaccatcacacaagaggtgccccag
cttactgacttaaactttgttgatgtaagtgatacaagcatcggcctaaagtggacccca
ataaatacttctgccattattggctaccgcatcaaagtaattgccacaggagaaactgtc
cctatttttgaagattttgtggattcatcagtaggatactacatggttacaggcttggag
ccgggcattgattatgaaatcagtgtaatcacactcattaatggcggagagagcgcccct
actacgctgattcaacaaacggctgttcctccaccaacggatctccgtttcaccaatgtg
ggacctgacaccatcagagtaacctggactcctccagcatctgttgaattgagcagcttc
ttggttcgcttctcacccatgaagaacaaggatgatgttgcagaactttccatttcgcct
tcggacagcgccgtggttttaacaaatcttcttcctggcacagtatacttggtcaaggtc
tacagtgtatatgaacaacatgagagtaaacctctgagtggagagcagaaaacaggcctt
gattcccccaccggactggatttctcagaaataacagcccattctttcaccgtccattgg
atcgctcctcgctcccccatctctggctataaaatacgccaccaccttgagcaaggtgga
agtagacccaaagaagtccgtgttgcaccatctcgcaactccatcacactcacagatctc
atcccagggtcagagtatgtggttagcgtgtctgccttctatggcaaagaggagagtttg
cccctaattggacagcaaagcacagtttccgatgtcccaagagacctacaggtgactgct
actggccccactagtctagtcgtttcctgggatgcacctgctgttacagttcgatactac
aggatcacatatggagaaacaggtggcagtgggcctgctcaagagttcaccgttcctggc
catgtctccactgctccgatttccgatcttaagcctggagtggattacaccattactgtg
tatgctgtcactgggcgaggggacagtcctgccagtagcaaacctgtcagcgtaaattac
caaatagaggttgatacaccatcgcagctgcaagttaccgatgtccaagacaacagcctg
actgtgaagtggcagccttcttcttctccagtgactggttatagagtgacagccgccccc
aaggacggccacagccccacaaaaactagagtcctttctgcagaacaaacagaagtcaca
attgatgaactgcaacctacagctgagtatgtggttagcgtctatgcccaagggccaaat
ggagaaagccagcctttggttgagaaagttgttacaaacgttgaccctcctaaaggactg
gcattcactgcagtggatgtcgattccatcaaaattgcgtgggaaagcccacaggggcaa
gtcaccggctacagggtgacctattcgacccctgaggatggaatccaggaactattccct
gctccagagggcgaagacgagaccgcggagctgcatggcctcaggccgggttctgagtac
actgtttacattgttgccttgcacaatgacttggaaagcctgcctttgattggcacccag
accacagcaatcccacctcctacgaatctgaaatttattcaggttgctccaacaagtctc
acactaacctggactgcaccaaacgtgaagcttactggatatcgagtgagaataaatccc
aaggaaaagactggcccaatgaaagaaattaaccttgctccagatagcacatctgctgtt
atctctggactaatggtggcaactaaatatgaagttaatatctatgctctgaaggactct
ttgaccagcagacctacccaaggtgtagttaatactctggaaaatgttagtgctccccgt
agggctcgtgtcacagatgtcacagagcgaaccatcacaattacctggcgcaccaagaca
gaggccatcacgggtttccagatagaggccgttcctgcagggggtcagaatccaattcaa
agaacgattagtcctgatgtgagaacctacaccgtcactggcttgcaacctggtactgac
tacaagatttttatctatgcactgaatgagaatgctcgcagctccccagcagagcttgat
gcttccactgccattgatgcaccttccaatctgcgcttcctcacaactacaagcaactcc
ttgttgatcagctggcagccaccacgggctaagatcaccggctacatgatcaaatatgag
caagttggcggcccaacccgggagctaattcctcgtcctcgtcctggtattactgaggcc
actatcacagatctggagccagggacagaatatatcatttatataattgctgtcaagaat
aatcagaagagtgaaccactgactggaaggaaaaaaacagatgagcttccccggctggta
actccaccgcattctggtaaaaagatgacagagatcttggatgtgccttctgttctggaa
aatgtaccttacctcacaaacaacccctatgacaatggaaacggtatcccaattccaggt
tcttctggtcagcaacccatcctgagcaacccaggtcagcaagtcattgtggaagaattt
gcgtctcgaacctccccaactccagcaactcccgatagggaagaacagccagtcgtgttg
atccatcatccctttcaggttcctgatgttgacaaaccttcttatcatcacacccttcta
tccaaggataattacacaaggccccaggaagcactttctcggacaactatctcgtggaca
ccttacacagatagctctgaatacattatttcttgccaaccggtcagtgctgaagaagaa
cctattgagatcaaagttcctggcgagtattctagtgctactcttatgggtcttactagg
ggggcaacctacaacatcatagtagaagcagttgaaaatcggagaagacacagagttctt
gaagagacggttacagtgggcaatgatgtttctgaaagattaagcccacccactgatgat
gtatgttatgataccttcactggttctttctattccattggggatgagtgggaaaggctg
tcggacactggattcaaattgtggtgccaatgtttaggtcttggtagtggacatttcaga
tgtgattcttcaaagtggtgtcatgacaatgggatgaactataagatcggtgagaagtgg
gataggcatggagagaatggccaggtgatgagctgcacttgccttggaaatggaaaagga
gaattcaagtgtgaccctcatgaagcaacttgttatgatgatgggaagatgtatcatgta
ggagagcagtggcagaaagaatatcttggggccatctgctcatgtacctgctatggagga
caacagggctggcgttgtgacaattgccgtagacctggtgcatctgaaggttctcctagt
caaacctatttacagagagagcagcaaagcccaaacacgaacatccactgtccaattgaa
tgcttctaccccttacatctacagtccgatgcccagaaccaacgtggagattaa
DBGET
integrated database retrieval system
