Thamnophis sirtalis (common garter snake): 106544549
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Entry
106544549 CDS
T06107
Name
(RefSeq) usherin-like
KO
K19636
usherin
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tsr03037
]
106544549
Cilium and associated proteins [BR:
tsr03037
]
Primary cilia and associated proteins
USH complex and associated proteins
106544549
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
ANF_receptor
Interfer-bind
Motif
Other DBs
NCBI-GeneID:
106544549
NCBI-ProteinID:
XP_013916323
UniProt:
A0A6I9Y082
LinkDB
All DBs
Position
Unknown
AA seq
2931 aa
AA seq
DB search
MTSLLPFAFAIQEINKDRQLLQNLTLGYNIHDNYLNTLGTSYTLLDILSTGEASVPNYSC
GRKDNVIALLDRAASDISIQMSTLGGIYKVPQFHPFLEKNEFCNLSWRKLYLDHNGDVAA
DLNVISLVVHGKENLIKEHLGSFARQSLTINQDALSQIKLLNMVKAHTTEDVPKGNIELF
VINRGAKEVKVKWFPLNEPNGQITYAVLFTGIFYADKANGNYSILNCTQILHTGKEANVW
VSIGGLIPFSNYTVEVNASNSQGYVISDPVEIALTAGAPDGMLPPRLSSASPTSLQVFWS
TPVRNNAPGSPRYRLQIRLKNCPENNTELFSKPTIYLHHILKNLQPHTSYELRVIACNEY
GDTFSNWTLMDTEEDKPGPIDPPLILEVKSRETTISWQPPSRPNGIVTHYNIYQNNQLHA
TIPGARSKYITSFLQPYTVYRFQVEGCTSKGCSLSSESLPIQTLPDAPEDIPAPELYSDT
PTSVLVSWQSPLHPNGPVENFTIERRVKGTEHVSTVASFPSNCSKSYLDQSAGLSPWKEY
EYRILASTFQGGINSSSWVEVTTRPSRPENIQAPKVQALDPYTAQVSWESPSILNGEILS
YEIHMPNPRITINNNLTTSMSHVVTNLIPFTNYSVTIEACTGGGDYIGGCTKSLPTYMVT
LPTFPQNISSVTVTPINESVITVYWQPPSKPNGHHIRYELLRRKIQQPLPSNPPEDLNLW
DNIYSGTQWFYEDKGLSRNTTYAYKLKVHNEVGYTSSEEVVVTTLAGFSEKSTNVAAKPL
NHTAIEVKWTTPTLQDVEGSIEYYLLSWNDTGQINSKKIPTSENSAVIDELYPNTHYQIL
LQVFSGLHSITSEPVQVITPDVEPEGLFPPEIVIINSTAVRVILASPSNSNGVVTEYSIY
VNNRYETRMKVPGSFILGDLSPFTLYDIQVESCRRNVCVRSNGTQIRTAEDVPKDLLPPW
IDVLGSRSLQINWTSPGQPNGIVLGYELLRKAQHTCPESKQLSKHQSEGTCLLLECNIHE
NIHGRRCSNPQFKICCNGNQYNTPNFQCCEDKYLSFLLNVSSACCGGQRYTVEPEYHYCG
NYSTRIFTETFIHRRIEKLIQEGVIVQSYCYLNEKLNWVSVVIENSYCWRIPLSGNQIRC
GVFCGRHEYVNMSSIVCCSTFSGETKAHIKKNNSVPLKCCVIELIPESEECCNGLGYNPL
KYVCADSISTRMMMKIKEESKCIPLCPRSTEEVTYCGQCNFDDHTCLCAWIKSSCSYTKN
RENKSVCPSFEEKIYTGGPTQYSFKDKNLEPHITYEYRLAVWNKHGKGFSEMNSATTEQD
VPEGIHPPHWTKVDNREDVIFLTWKEPCQPNGIIIYYIILRNGVEHFRGKELNFMDTSDI
QPYQEYSYLLRACTVAGCSDSSTVIAVTVQGIPENVLPPTIIPLNATTLHLSWAAPKKPN
GLIKEYLIHQIGRGLICTGPADQVQLTLTELQPYENYNFTLTACTFAGCTTSQTTAGRTL
QAAPQGVWSQPRHITVSSKIVELYWDEPEKTNGIVIQYRLFCDGEEIFKGGGENLNFTHS
TMQPNNRYVYQLEASTWGGSNISEKYIVQTPATTPEEIHIPYNITVINADSIFVAWDIPG
LFKSNVPLEYNILLDAGSTSSLVKPVGQSNFTVLDGLDPCTQYEIRIQACQNDDCGVGEQ
VYATTAEAFPEDLSPPVISAIGPTYIDVKWIPPKKPNGIIRNYFIYRRPVGTQEERLVFI
WSEGTLEFIDATDALLPFTEYEYRVKAQNSKGSVNSSWSPTQTLEAPPTGLKAPSAQAIS
AHSLFLNWTSPTSPNGAISQYHIVYQERQNDPTINTQDVTALTVSGEMYQTYLFGLKPYT
TYYIHIVAVNNAGQVASPWTSVRTLEASPSGLSNFTVDKKENGRALLLRWPEPSKPNGNI
KIYNIFNDGNLEYSGLSRQFLFRRLEPFTEYTLLLEACTAAGCTRSSPQQIWTDAAPPAS
QMAPVIHSVNATSIELSWSEPINSNGKIMRYEVIHRHTKENASEENSTTEEEDIVFTEYN
TGSNAFVYHAQHLQPWTTYEYKIRAWNSAGYTDSPWSAAKTSQAAPEGMAAPMLTFIPQN
PSKMWISWSLPEKSNGVLLSYKLQRNDVPYPFSFDASTFNYTDEDLLPYTEYNYVITACT
LEGCCSSDHSRIRTLEAPPAIVSPPTLEGIHSTQINVSWSPPQIQNGEIVKYILKLNGEE
QYVGKSLFKTVVNLQPYAKYDITLVACTNGGCTASASQSAWTMEASPLNLDPPKLLVTDS
ESLEITWKAPNNPNGKIQIYELRRNGLLVYSGLDTHYKDFMLTPGMEYIYTVTANNSQGS
VTSQIAKIRTDPSAPSGMSPPLLHPWTSQTILVIWDPPAKINGNLINYTIILREPIKSQK
KVIYLDSFHDSFGRRSYNLTELKPYQRYEVQVQACGLLGCTHSEWSSAQTLEAPPEIQPA
PFIDVQSSPDGFQTVLSIVWTGPKHPNGDILHYELYRRQSVPNQHNVSLVYNGSSTSFKD
DTLLPFTEYEYQVWSVNSAGRTASNWTKCKTGPAPPQGLPAPLFETVASTSAVVNIRPPL
KPNGIITLYRFFSNSTKGKEKVLSEGTTAQQTIHGLKPFTTYSIGVEACTCFNCCSQGPM
AQVTTQPAPPTQQPFPHIENLTSRNASFLWEAPQEPNGIVRRYELHMYTSCLPWLLPIER
VCKPGPIEVRYSGKNRHSSVSDLQPYTTYKLRVVSYNSVGSTTSEWITFTTEKEVPLYKS
PFIIIGNLSTIFLDWSHTFLLNGLLKEYVLMEGGQCIYSGFDTRLYLPRTSDKIYLFQVT
CITDEGSAITPVIKYNAATGFGPVLTTPGENNKGNTKQAMFYTELWFVILMAILALILLA
IFLSLILQRKINKQLYSRERPPLVSVQKRMSPMNVYSQGETHMVWCSAYVL
NT seq
8796 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtctcctacccttcgcttttgccattcaagagatcaacaaagacagacagctc
ctgcagaacctcacccttggctacaacatccatgacaactatttgaacactcttggaact
tcatataccttgttagacatactatctactggagaggccagtgttcccaactacagctgt
ggaaggaaggacaacgtcatcgctcttctagatagagctgccagtgacatttccatccag
atgtcaacattgggaggcatctacaaagtccctcagttccatccctttctggagaagaat
gagttttgcaatctttcctggaggaaactctacttggaccacaatggagatgtagcagca
gatctgaacgtcataagtttggtggttcatggcaaggagaatcttatcaaagaacacttg
gggagttttgcaaggcagagtcttacgattaaccaagatgcactctcacaaataaagttg
ctcaatatggtaaaagctcatacaactgaagatgtacctaaaggaaacattgaactgttt
gttattaatcgtggagccaaagaagttaaagtgaaatggtttcctctgaatgaacccaat
gggcaaataacatatgctgttcttttcactggaatcttttatgctgacaaagctaatggc
aattacagtattttaaattgcacacaaattttacataccggcaaagaagccaatgtctgg
gtgtccattggaggactaattccattttcaaactacacagtggaagtgaatgcttctaat
agccaaggctatgtgatcagtgatcctgtagaaattgccctaactgctggtgctccagat
ggcatgttgcctcctaggctttcatctgccagtccaaccagtcttcaggttttctggtct
acaccagttcgcaataatgctccaggctcacccagataccgactccaaataagacttaag
aactgcccagaaaataatacagagttgttttctaaaccaacaatttatttacatcacata
ctgaagaacctgcagccacatacatcttatgagttgagggttattgcctgcaacgaatat
ggtgatacattcagcaactggactctgatggatacagaagaggataaaccaggacctatt
gacccaccactaatcttggaagtgaaatccagagaaacaaccatttcctggcagcctcct
tcaaggccaaatggcattgtcacccattacaacatctatcaaaacaaccagctgcacgct
actataccaggagctagatcaaaatatattacatctttcttgcaaccatatacagtttac
cgatttcaagtggaaggatgcacttccaaagggtgctccctttcctctgagagcctacct
atacaaacccttccagatgcacctgaagacatccctgctccagaactatactcagacacg
ccaacatctgtgcttgtgtcatggcaatctcctcttcatccaaatggaccagttgaaaac
ttcacaatagagaggagagtaaagggaactgaacacgtgtccacagtagcttcttttcct
tccaattgctccaaaagttatctagaccaaagtgctggtctcagcccttggaaagaatat
gaatacagaatactggcaagcacttttcaaggtggcattaacagcagttcttgggtagaa
gtcaccaccaggccctcaagacctgaaaacatccaggctcctaaggtgcaagcattggat
ccatacactgcccaggtttcctgggaatctccttctattttaaatggagaaattttgagc
tatgagatccacatgccgaaccctcgaatcactataaataacaatttgacaacttcaatg
agccatgtagtaaccaacctgattcctttcacaaattactcggtcaccatagaagcttgt
acaggaggtggagattacattggagggtgcaccaagagtttgccaacatatatggttaca
cttccaacatttccccaaaatatcagttctgtgactgtgaccccaattaatgagtcagtc
attactgtgtattggcaaccaccatctaaacccaatggacatcacataagatatgagctc
ctgagacgtaaaatccagcagccacttccatcaaatccccctgaagatttaaatctctgg
gacaatatttactcaggaactcagtggttttatgaagataagggtcttagcaggaataca
acatatgcatataagctgaaagtacataatgaagtaggatatacgtcaagtgaagaagtg
gttgttacaacattagcaggattttcagagaaaagcactaatgttgctgcaaagcctctt
aaccacacagctatagaagtgaaatggactactccaaccttacaagatgttgaaggaagt
attgaatattatttactttcctggaatgacactggccaaataaactccaaaaagatcccc
acaagtgaaaatagtgctgttattgatgaattatatccaaatacacactatcagattttg
cttcaagttttcagtggacttcacagcatcacaagtgaacctgtgcaagtgattacacca
gatgtagagccagagggcttgttccccccagagattgtcatcatcaatagtacagctgta
cgtgtcattttggcatcaccttcaaactcaaatggtgttgtcacagaatattctatttac
gtaaataaccgatatgagaccagaatgaaggtgcccggatctttcattttaggagatttg
tctccattcactctttatgacatacaggttgaatcctgcagaaggaatgtttgtgtgaga
agtaatggaacccaaatcagaactgcagaagatgtgccaaaagacttattgccaccatgg
atcgatgtccttggttcaagatcacttcagattaactggacatcaccaggacaaccaaat
ggcattgttttaggatatgagctattgcgtaaagctcagcatacctgccctgagtcaaag
caactgtcaaaacatcaaagtgaaggaacttgcctgctcttggaatgcaacattcatgaa
aacatacatggaagacgatgcagtaatccccagtttaagatatgttgcaatgggaatcag
tacaatactccaaatttccaatgctgtgaggacaaatatctttcatttcttctgaatgta
tcaagtgcttgttgtggaggtcagaggtatacagtggaaccagagtatcactattgtggt
aactattctacacggatattcacagagacatttatacatagaagaatagagaagttaata
caagaaggtgtcatagtacagtcttattgctatctaaatgaaaagctaaactgggtgtct
gttgtaattgaaaactcttactgctggcgtattcctttgtcaggaaaccagattcgttgt
ggagtgttctgtggtagacatgaatatgtgaatatgtcaagtatagtatgctgctcaacc
ttcagtggtgaaactaaagcccacattaaaaagaataactcagtgccattaaaatgctgt
gtgattgaacttattccagagagcgaagaatgttgtaatggacttggatataatcccttg
aaatatgtttgcgctgacagcatttcaactagaatgatgatgaagataaaagaagaatcg
aaatgcatcccactgtgtcctagatctactgaagaagtgacatactgtgggcagtgtaac
tttgacgaccatacttgtttatgtgcttggataaagagttcctgtagttatacaaaaaat
agagaaaataaaagtgtatgcccatctttcgaggaaaagatttatacaggaggcccaact
cagtattcattcaaagataagaatctagaacctcatattacatatgaatataggctagct
gtgtggaacaaacatgggaaaggctttagtgaaatgaacagtgcaaccactgaacaagat
gtccctgaaggtatacatccacctcattggacaaaagtggataatcgtgaagatgtaata
tttctaacatggaaggaaccttgtcaaccaaatggtatcatcatttattatattattctc
cgaaatggagttgaacatttcagaggaaaggaactgaacttcatggataccagtgatatt
caaccataccaggaatactcatatttattgcgtgcttgcactgtggctggatgttcagac
agtagcacggtaattgcagtcactgtccaaggaattccggagaatgttctgccaccaaca
attatacctctaaatgcaacaaccttgcatttgagttgggcagcaccaaagaagccaaat
ggtttaatcaaagaatacctcatccatcaaattggaaggggacttatatgtactggccct
gcagaccaggtgcagctcaccctcacagaacttcagccttatgaaaactacaacttcaca
ctcacagcatgtacatttgctggttgtactaccagtcagacaactgcaggtagaacattg
caagctgctcctcaaggggtatggtcacagcctcgccatattacagtaagctctaaaata
gtggaattgtattgggatgagccagaaaaaaccaatggaattgtcattcaatatagatta
ttttgtgatggagaagagattttcaaaggtggtggagaaaatctgaatttcacccattcc
accatgcaaccaaataacagatacgtttaccagctagaagccagtacatggggtggtagc
aatatcagtgaaaaatatattgtccagacaccagcaacaacaccggaggagattcacata
ccatacaatatcacagtaattaatgcagattccatattcgtagcatgggacattcctggg
ttatttaagagcaatgtacctttggagtacaatatattactagatgctggcagtacctcc
tcacttgtaaaaccagttgggcagtccaatttcactgttctggatggacttgatccatgc
acccaatatgagataaggattcaagcctgccagaatgatgactgtggagttggtgaacaa
gtatatgcaaccactgctgaagcctttcctgaagatttgagtcctcctgtcatttcagcc
attggaccaacatatatagatgtgaaatggatacctcctaaaaaacccaatgggataatt
agaaactactttatttacagacgtcctgtggggactcaagaggaaaggcttgtgttcatc
tggtctgaaggcactttagaatttattgatgctacagatgctcttctgccatttactgag
tatgaataccgtgtcaaggctcagaattccaaaggttctgtgaatagttcatggtctcca
acgcagaccctagaagctccaccaacaggcttgaaagctccctcagcacaagcgatcagc
gctcattctctgttcctaaattggaccagcccaacttctcctaatggtgctatttctcag
tatcacattgtctatcaagagagacagaatgacccaacaattaacactcaggatgttact
gcactaacagtttcaggagagatgtatcaaacttatttgtttggtttgaagccatataca
acctactacattcatattgttgctgtcaataatgctggccaagttgctagtccatggact
tcagtgcgcaccctggaagcttctccaagtggcctaagcaactttacagtggacaagaaa
gagaatggcagggcattattactcagatggccagagccttccaaacccaatggtaatatt
aagatttacaatattttcaatgatggtaatttagaatatagtggtttgtctcgtcagttc
ctcttcagacgtcttgagcccttcactgagtacactctccttcttgaagcttgtacagca
gctggttgcactcgctcttcgccacagcaaatttggacagatgcagcccctcctgcttct
caaatggctcccgtgatccattcggtgaatgcaaccagcattgaactgagctggtctgag
ccaattaattcaaatggaaaaataatgcgctatgaagttattcacagacacaccaaagaa
aatgcttcagaggaaaatagcacgacagaagaagaggacattgttttcacagaatataac
actgggagtaatgcatttgtatatcatgctcagcatttgcagccatggactacatatgaa
tataaaatacgtgcctggaattcagcaggctacactgatagtccttggtctgctgcaaaa
accagtcaagctgccccagaaggcatggctgctcccatgttaacttttatccctcaaaat
cccagcaaaatgtggatttcatggtcactcccagaaaaaagcaatggtgttctgctgtca
tataagctccaaagaaatgatgttccctatccttttagctttgatgcttcaaccttcaat
tacactgatgaagatttgcttccatatacagaatacaattatgtaataactgcttgcacc
ctggaagggtgctgctctagtgaccattccagaatacggacattagaggcacctccagca
atagtcagccctcctactctagaaggtatacattcaacccagattaatgtatcttggtca
ccaccccaaattcaaaatggtgaaatcgtaaagtacattttaaagctgaatggtgaagaa
caatatgttggaaagagtttattcaagacagtagtgaatctacaaccttatgctaaatat
gacatcacattggttgcctgtaccaatggaggctgcactgctagtgcatcccaatctgct
tggacaatggaagcctctcctcttaacttagatccccctaagttactagtgacagattca
gaatctctagaaattacatggaaagctcccaataatccaaatggtaaaatccagatttat
gagctaaggagaaatggattgctggtttattcaggtctagatacacactataaagacttt
atgttaactcctggaatggaatacatctatactgttactgcaaacaacagccaagggagt
gtcaccagtcaaatagctaagataagaactgatccttctgccccatctggaatgtctcca
cctctgttgcatccatggacctcacagacaattttggttatttgggatcctccagcaaag
attaatggtaacctgatcaattatactatcattcttcgggagcctattaaatcacaaaag
aaagtgatttatctggattcattccatgattcttttggaagacgatcttacaacttaaca
gaactaaaaccttatcaaaggtacgaagtacaagtacaagcttgcggtcttctcggctgc
actcacagtgaatggtcatccgcacaaactcttgaagcaccccctgaaatacagccagct
cctttcatagatgtccagtcaagtcctgatggattccagactgttctttccattgtgtgg
actggcccaaagcacccaaatggagacatcttacattatgagctttatcgaagacagtca
gtacccaatcaacacaatgtcagccttgtttataatggttcatccacttcattcaaagat
gacacactcttgcctttcaccgaatatgaatatcaggtttggtcagttaattctgctggc
cgaaccgctagcaattggacaaaatgtaagactggcccagcccctcctcaaggacttcca
gcccctttgtttgaaacagtagcttctacttctgctgtagtcaacatccgtcctcctcta
aaaccaaatggaataatcaccctctacaggttcttctctaatagcaccaaaggaaaggag
aaggtgctctcagaaggaactactgctcagcagacaatacatggactcaaaccttttacc
acttattctattggggttgaagcttgcacatgctttaactgctgcagccagggaccgatg
gctcaagtcaccacccaaccagctccaccaactcagcagccatttcctcatatagaaaat
ctgacttcaagaaatgcttcttttctgtgggaggctcctcaggaacccaatggcattgtg
agaagatatgaactccacatgtacacatcctgtcttccttggttactgcccatagaaaga
gtttgtaagcctggacctatcgaagtgagatatagtggaaagaaccggcattccagtgta
agtgaccttcagccttatacaacctacaaactgagagtggtgtcctacaattcagttgga
agtactacttcagaatggattacttttactactgaaaaagaggttcctctatacaaatcc
ccatttatcataattggaaatttatccaccatcttcttggattggagtcacactttccta
ctgaatgggcttctgaaggaatatgtgctaatggaaggagggcagtgcatctacagtggc
tttgatactagactgtacttgccaaggacatctgacaaaatttatttatttcaggtgact
tgcatcactgatgaagggagtgctataacaccagtaatcaagtacaatgctgctactgga
tttggtcctgtcttgacaactccaggagaaaataacaaaggcaacacaaagcaagcaatg
ttctacacagagttgtggtttgtgatactaatggcgatccttgccttgatcctcctagca
attttcctgtctctaattctacagaggaaaataaacaagcagctgtattcacgggaaagg
cctcctttagtctcagttcaaaagagaatgtcaccaatgaatgtctattcacaaggagaa
actcacatggtatggtgctctgcctatgttttgtaa
DBGET
integrated database retrieval system
