Thamnophis sirtalis (common garter snake): 106544862
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Entry
106544862 CDS
T06107
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr02010
ABC transporters
tsr04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
106544862
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106544862
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tsr02000
]
106544862
Transporters [BR:
tsr02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
106544862
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC2_membrane_3
R1_ABCA1
ABC_tran
AAA_21
DUF4162
Mst1_SARAH
Motif
Other DBs
NCBI-GeneID:
106544862
NCBI-ProteinID:
XP_013916739
UniProt:
A0A6I9XLM0
LinkDB
All DBs
Position
Unknown
AA seq
1216 aa
AA seq
DB search
MELGMHEYPPLAQVELCEHKQPSLVHETPFMQLEGRTIILSTHHMDEADILGDRIAIISN
GKLCCVGSSLFLKNQLGTGYYLTLVKKDVDSSLSSCRNSSSTISYLKKDDSVSQSSSDAG
LGSDHESDTPTIDVSAISNLIMKHVPEAKLVEDIGHELSYVLPYEAAREGAFVELFHEID
DRLSDLGISSYGISETTLEEIFLKVADDNGVDAETSDGTLPAKRNRVFGDRQSCLHPFTE
DDAFDPNDSDIDPESRETDLLSGMDGKGSSQMKGWKLAQQQFVALLWKRLLIAKRSRKGI
FSQIVLPAIFVCIALVFSLIVPPFGKYPSLELHPWMYDEQYTFISNDAPKDATTQKLLSA
LLSKPGFGTRCMEGYSIPGFPCSAGKEEWSQDPVPENLKEIFQKGNWTMKNPSPLCICSN
SNIKKVLPVCPAGAGGLPPPQRIQETTDILQNLTGRNISDYLVKTYAQIIGKSLKSKHWV
NEFRWRRDIVVEAKLRIETAKKVTHALVTSRLDYCNALYMGGSAAERFLNSFRNFMKGLD
TSKNIKVWFNNKGWHAVGAFINVINNAILRANLQDGENPSNYGITVFNHPLNLTKQQLSE
VALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHLQFICGVKPVIYWAANFVW
DMCNYIIPATLVVIIFICFQQKSYVSSTNLPVLALLLLLYGWSITPLMYPASFIFKIPST
AYVVLTSVNLFIGINASVITFVLELFTSSKFNNINDILKSVFLIFPHFCLGRGLIDMVKN
QAMADALERFGENRFVSPLSWNLVGRNLFAMAIEGVVFFLITVLIQYRFFIKSRPISAKL
PPVNEEDEDVIRERQRIIGGGGQSDILEIKELTKRYRMKQKPAVDRICVGIPPGECFGLL
GVNGAGKSSTFKMLTGDTDVTGGDAFLKGNSILSNIEEVHQNMGYCPQFDAIQELLTGRE
HLEFFALLRGVPEKEVCKVGEWAVRKLGLVKYAEKYAGTYSGGNKRKLSTAMALIGGPPV
VFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCL
GSVQHLKNRFGDGYTIIVRIAGANPDLTPVENFFKLAFPGSVLKEKHRNMLQYQLPSSPS
SLARIFSILSQNKKRFHIEDYSVSQTTLDQVFVNFAKDQSDDDHMKDLSLHKNQTVVDVA
NLTSFLQDEKVKESCV
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggagcttggtatgcacgagtaccctccactcgcacaagtggagctttgtgagcacaag
caaccttcgcttgtgcacgaaactccattcatgcaactggaaggtcgcactatcattctc
tccacccaccacatggatgaggcagatatccttggggaccgaattgccatcatatctaat
ggcaaactttgttgtgttggctcttcattattcctgaagaaccagttgggcacaggatac
tacctgaccttagtcaagaaggatgtggattcctcactcagctcctgtagaaacagcagc
agcacaatatcttacttgaaaaaggatgacagtgtttcgcagagtagttctgatgcaggc
cttgggagtgatcatgaaagtgacaccccaacaatagatgtatctgcaatttctaatctg
attatgaagcacgtcccagaagcaaagctggtggaggacattggccacgagttaagttat
gttttgccctatgaagctgcccgagaaggagcttttgtggagctgtttcatgaaattgat
gaccgcctctctgacctgggtatttccagctatggcatttctgagactaccttggaagag
atttttctcaaggtggcagatgataacggtgtggatgcagagacttcagacggcacattg
cccgctaaaagaaaccgagtctttggagaccgacaaagctgccttcacccattcacagag
gacgatgcttttgatcccaacgattctgacatagatccagaatctcgggaaactgacctt
ctgagtgggatggatggcaaaggatccagtcagatgaagggctggaagctggcccagcaa
cagtttgtagctctgctttggaagaggctgcttattgccaagcgcagcagaaagggcatt
ttttcccagattgtcctccctgccatcttcgtttgcattgctcttgtgttcagtctgatt
gttcctccctttggaaaatatcccagcctagaattgcacccttggatgtatgatgagcag
tacacatttatcagcaatgatgccccaaaagacgccacaactcaaaagcttttgagcgct
cttctcagcaaacctggtttcgggacccgttgcatggaaggatactccattccagggttt
ccttgttctgcgggaaaagaagagtggagccaagatccagtacctgagaatctcaaggaa
atcttccagaaaggcaattggacaatgaagaatccttccccattgtgcatctgtagcaat
agcaatatcaagaaagtgcttccagtgtgtcctgctggggctggtggtctacctcctccg
cagagaatccaggagaccaccgatattctgcagaatctgacggggcgcaacatctctgac
tatttggtgaagacttatgcacagatcattggaaaaagtttgaagagtaagcattgggtc
aatgagttcagatggagaagagacattgttgttgaggcaaagttgagaattgaaactgca
aaaaaggtcactcacgccctcgttacctcaagactggactactgtaatgcgctctacatg
gggggaagtgctgccgaacggtttctgaacagcttccggaacttcatgaaaggcttggac
acaagtaaaaatattaaggtgtggttcaacaacaaaggctggcatgctgtcggcgctttt
atcaatgtgatcaacaatgccattctccgtgccaacctacaagatggagagaatccaagc
aattatggcataacggtcttcaatcacccactgaacctcaccaagcagcagctctctgaa
gttgccctgatgactacttcggtggatgttttggtctccatttgtgtcatcttcgccatg
tcctttgttccagccagctttgtggttttcttaatccaggagcgtgtcagcaaagccaag
catctccagttcatatgtggtgtgaaaccagtgatctactgggcggccaattttgtatgg
gatatgtgcaactacatcattccagcaactttggttgtcatcatctttatctgcttccag
cagaaatcctatgtatcctcaaccaacctcccagtgttagcacttctacttttgctctat
gggtggtccataactcctctcatgtacccagcatcttttatattcaagattcctagcaca
gcatacgtggtgctgaccagcgtcaacctcttcattggcatcaatgcaagcgtaatcact
ttcgtccttgaactattcaccagctctaaattcaacaacatcaatgacatccttaagtcc
gtgttcctcatctttccacacttctgcttggggcggggcctaatcgacatggtgaaaaac
caagcaatggcagatgccctcgaaaggtttggtgagaatcgctttgtctcccctctctcc
tggaacctagttgggaggaacctttttgccatggctatagaaggagttgtgttcttcctc
atcacggtgttgatccaatacagattctttatcaagtcaaggcctatcagtgcaaagctt
ccacctgtaaacgaagaggatgaggatgtgattagagaaaggcagaggatcatcggtggt
ggtggacagagtgacatcttagaaatcaaagaattaaccaagaggtacagaatgaaacag
aaacctgctgtggataggatctgtgttggaatccctcctggagagtgctttggcctcttg
ggcgtgaatggcgcagggaaatcttccactttcaagatgttgactggagacactgatgtt
acaggaggagatgcttttctgaagggaaacagtattttgtctaacatcgaagaagtccat
cagaacatgggctactgtcctcagtttgatgccattcaggaattgctgactgggcgagaa
cacctggaattctttgcgctcttaaggggagttcctgagaaagaagtctgcaaggttggt
gaatgggctgtccgtaaactaggccttgtaaaatatgctgaaaaatatgccggcacctac
agtggtgggaacaagcgcaagttgtctactgcaatggctctaatcggggggcctcctgtg
gtcttcctggatgagccaactacaggaatggatcccaaggcccgccgcttcctttggaac
tgtgccttgagcatcatcaaagagggaaggtccgtggtccttacatctcacagcatggaa
gaatgtgaggccctctgcactcgaatggcaatcatggtgaatggacggttcaggtgcctt
ggcagtgtccaacacttgaagaacaggtttggagatggctacacaataattgtacgaata
gcaggggcaaatcctgacttaacgcctgttgagaacttcttcaagctggcttttccagga
agcgtgctgaaggagaagcatcgcaacatgctgcaatatcagctcccatcctctccatcc
tctctggctaggatatttagtatcctctcccagaacaaaaagagattccacatagaagac
tactccgtttcccagaccacacttgaccaagtatttgtaaacttcgccaaggaccaaagt
gatgatgaccacatgaaagacttgtcgttgcacaaaaaccagactgtggtagatgtagct
aatttgacttcctttttgcaagatgaaaaggtgaaggaaagctgcgtatga
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