Thamnophis sirtalis (common garter snake): 106544899
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Entry
106544899 CDS
T06107
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04140
Autophagy - animal
tsr04148
Efferocytosis
tsr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106544899 (VPS18)
04148 Efferocytosis
106544899 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
106544899 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106544899 (VPS18)
Membrane trafficking [BR:
tsr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
106544899 (VPS18)
Hops complex
106544899 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-C3HC4_2
zf-RING_16
zf-RING_Vps41
zf-RING_5
zf-RING_UBOX
zf-RING_11
PPR
zf-RING_2
zf_RING_Vps8
DUF2229
zf-rbx1
zf-ANAPC11
PPR_2
zf-C3HC4
DUF5600
Motif
Other DBs
NCBI-GeneID:
106544899
NCBI-ProteinID:
XP_013916780
UniProt:
A0A6I9Y8E4
LinkDB
All DBs
Position
Unknown
AA seq
994 aa
AA seq
DB search
MQSKLQIRKIATYTGSSSGLVHTCSQRCSRSEFQGKDIIHVSSKYEVFTGYVNARLEKET
PIFNKQRIDFTPPKKINSMIVSTNQLCMSLGNDIIFRLDVAKADEPNQVELGRKDEASVY
KLFLDHTGSHLIIALSSSECLYLNRSTQKIRLLSRWKGHLIESVGWNKIFGTEINTGPIL
VGTSQGQIYEAEISVTEGSLFSTNPDQYFRLIYTVEEEAGPAPVCCIEIERGVDGKWFII
ATTHKRLFQFVGKIPEGSEPQAFGTIFSMPEDHLPGFREFPASLGYSEIAFYTPKLRSSP
SAFAWMMGNGVLYGSLDYGRPDSVLSDEQVWEYPSDVDTLANKPISIVLTQFHFLLLFPD
RVKAVCTLNGQVVFQDVFLEKFGSLKRMIKDPAFGQIWIHTEKVVFRYNIQRESRDVWKM
YMNINKFDLAKEYCKDRPECLDIVLAKEAEYCFQNKRYLDSAKCYALTQNYFEEIALKFI
EAKQEEALMEFLIKKLASLKQSETTQITLLTTWLTELYLNRLGVLAGDGSKQDLYEKTKE
KFRSFLGSPKIKDSLRNNRSTIHELLASHGDTDHMVYFAVIMNDYERVIAHYCQHENYDE
ALKVLSRIKNEELFYKFSPILIQHMPKKVVDAWIEMGKDLDAKRLIPALVTYSQSGSTQQ
INEAIRYMEFCVNELEETQEAIHNYLLSLYALCRPDSLLSYLEHAGTFADSIHYDLKYAL
RLCAEHSHHRACVHVYKVMEMYEEAVDLALQVDVDMAKSCADLPEEDEELRKKLWLKIAR
HVVQEEKDVKKAMACLSSCNLLKIEDVLPFFPDFVTIDHFKEAICNSLEAYNKHIEELKT
EMEEATQSAERIRDDIQEMRNKYGSVEPQEKCAACDFPLLNRPFYLFLCGHMFHYDCLLQ
AVYPNLPAYKQAKLEDLQKKMLAASQPSKSHHRHKDTADTLGQGKGQPSREQTKADIDDI
VAAECVYCGDIMIRSIDKPFIDPERYHEEMQSWL
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagcaagttgcaaataaggaagattgccacctacactggttcctcatctggatta
gtccacacatgttcccaaagatgtagcagatcagagtttcagggaaaagacatcatccat
gtgtccagcaagtatgaagtattcacaggatatgtaaatgctcgcctagaaaaagaaaca
ccaatttttaacaaacagagaattgacttcacacctcccaagaagattaatagtatgatt
gtctcaactaaccaactgtgtatgagtcttggaaacgacataatatttagacttgacgta
gccaaggcggatgagcccaatcaggttgaacttggacgaaaagatgaagccagcgtttat
aaacttttcttggaccacacaggttcccatcttatcattgcgctgagtagcagtgagtgt
ctgtacttgaacagaagtactcaaaagatacggcttctttcgcgttggaaaggtcatttg
attgaaagtgtgggttggaacaaaatttttggtacagagataaacactggccccattttg
gttggaacatcacaaggccaaatatacgaggctgagatttctgtcactgaaggcagtctc
tttagtactaatcctgatcaatatttccgcctgatttatactgtggaggaggaagctggt
cctgccccagtctgttgcattgaaatagaacgaggagttgatggaaaatggtttatcatt
gccaccactcataagaggcttttccagtttgttggcaagattccggaagggtcagagcct
caagccttcggcaccatatttagcatgcctgaagatcatttgcctggatttcgagagttt
ccggctagtcttggctacagtgaaattgcattctacactcccaagcttcgttcttcgccc
agtgcttttgcttggatgatgggtaatggggttttgtatggttctctggattatggacgt
cctgattctgttctgagtgatgagcaagtgtgggaatatccttctgatgtagacacacta
gccaataagcccatctccatagtgctcacccagtttcattttctgctgctttttcctgat
agagtgaaggctgtatgcactttgaatgggcaagttgttttccaggacgtattcctagaa
aagtttggctcgctaaagcgtatgatcaaagaccctgcatttggacaaatctggattcac
accgagaaagttgtgtttcgctataacattcagcgagaatcccgtgatgtgtggaagatg
tacatgaatatcaacaaatttgatttggctaaagagtactgtaaagaccgtcccgagtgc
ctagatattgtgctggcaaaagaagcagaatactgtttccaaaacaagagatatctggat
agtgctaagtgttatgcactgacccaaaattactttgaggagattgctcttaaatttatt
gaagctaaacaggaagaggcactgatggaatttttgataaagaaactggctagcttgaag
cagtctgaaacaacacaaataactctgctgaccacttggttaaccgaactatatttaaat
cgcttaggggtgctggctggggatgggtcaaaacaagacctctatgaaaagaccaaggag
aagttccggagtttcttgggtagccccaaaatcaaagactccctccgcaacaatcgatca
actatacatgagctgttggcaagtcatggggacacagaccacatggtatactttgctgtc
ataatgaatgattatgagcgagtgatagcccattattgtcaacatgaaaattatgatgaa
gcattaaaagtcctatccagaatcaagaacgaggaactcttttacaagttttctcccatt
ttgatccagcatatgcccaagaaagtagtagatgcttggattgaaatgggcaaagacttg
gatgctaagaggctaattcctgctcttgtcacctatagtcagagtgggagtacccagcag
atcaatgaagccattcgatacatggaattctgtgtgaatgagctagaagaaactcaggag
gccattcacaattatttgttgtcactctatgctttgtgtcggcctgattcattactgtcc
tatctggaacatgctggaacctttgctgacagtatccattatgacctgaagtacgcactt
aggctttgtgcagaacatagccaccaccgggcttgtgttcatgtttataaagttatggag
atgtatgaagaagctgttgatctagctttacaggtggatgtagatatggcaaaatcctgt
gcagatcttcctgaagaagatgaggagttgagaaaaaaactctggctgaagattgctcgt
catgttgtacaagaagagaaggatgttaagaaggcaatggcctgtctttctagttgcaat
ctgctgaagattgaagatgtgttgcctttcttcccagactttgtcaccatcgatcacttc
aaggaagctatctgcaactctctagaggcctataacaagcacatagaggagctgaagaca
gagatggaggaagccactcaaagtgctgaaaggatcagggatgacattcaggagatgaga
aacaaatatggctctgttgaaccacaagaaaagtgtgcagcgtgtgatttcccacttcta
aaccgtcctttttacctttttctttgtggccacatgtttcactatgattgccttctgcag
gcagtttacccaaacttgcctgcctataagcaagctaagctggaggatcttcaaaagaag
atgctggctgcaagccagccttccaaatcccatcaccgccataaggatacagcagatact
cttggtcaaggaaaaggtcagccaagtcgagaacagacaaaagctgacatagatgatatt
gtggcagctgaatgtgtgtattgtggtgacataatgatccgatccattgataagcctttc
attgatccagagagatatcacgaagagatgcagagctggttgtag
DBGET
integrated database retrieval system
