Thamnophis sirtalis (common garter snake): 106545149
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Entry
106545149 CDS
T06107
Symbol
PRPF40A
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106545149 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsr03041
]
106545149 (PRPF40A)
Spliceosome [BR:
tsr03041
]
Complex A
U1 snRNP components
U1 related factors
106545149 (PRPF40A)
Complex B
106545149 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
106545149
NCBI-ProteinID:
XP_013917085
UniProt:
A0A6I9Y8K5
LinkDB
All DBs
Position
Unknown
AA seq
1056 aa
AA seq
DB search
MSGGESAAAAASPQPLPFSLPKPPPLMQLNPGEGVRPVGAPGPEQSPKSARMGGRPDWPT
GKPVSLLAPLLPPRGEPEPLLPFGPASRQPLRGRLLGRGGGGGGGNSAGGGSLLNPGMRL
GAGGGGTGGGGMGRDAVMMGHPGMPHYPPMGMHPMGQRPPNMPPVSHGMMPQMMPPMGGP
QMGQMPGMMQTVMPGMMAPHMSHGPMQPTGPPGVNSMDSQIGLAPPGTQPTPPVCAVQQA
TPTNNSTNEEPSKQKSTWSEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWK
EYKSDSGKPYYYNSQTKESRWAKPKELEDLEAMIKAEENSKSEESAPVSSAAVASGIPAA
AASVPEMPVPMPSAPVAPAVASAPETEPSAMAPVIENDAGVAPSTDEQVQPAAPPVVQEQ
SMEVITNSVEETPKQESLEVVPKKEEEEAQPVKKTYTWNTKEEAKQAFKELLKEKRVPST
ASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVHTEKEEKEEARLKYKEAKESFQRFLE
NHEKMTSTTRYKKAEQMFGELEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWE
ALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEE
EEEKQKGLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQ
PGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVSTPFEDFVTVISSTKRATTL
DAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIEMDAVWEDIRE
RFVKEPAFEDITLESERKRIFKDFIYLLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGS
ESEDDDSHSKKKRQRSDSRSVSERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDVDR
EREKKERENEKERSRQRSESKHKSPPKKRPNKDSHNPATNSVRVQETSEEADQIRGNWDT
SGSELSEGELEKQRRTLLENWMKINKKYLYQICLQI
NT seq
3171 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtggagaatcggcggccgccgcggcctctcctcagccgttgcccttctcgctg
cccaagcctccccctttgatgcaactcaaccccggcgaaggcgtgcgccctgtgggagct
cccggaccggaacagtcgccgaaaagcgcccgcatgggaggccggccggattggcctacc
gggaagcccgtcagtcttctggcacctctccttccgccgcgcggggaacccgaaccgctc
cttcccttcgggccggcttctcgccagcctctccgcgggaggctcctcggcaggggcggc
ggcggcggcggcggtaacagtgcgggcggcgggagcctcctcaaccctgggatgaggctg
ggcgccggcgggggaggaaccggcggtggcggcatgggccgagatgctgttatgatggga
catccaggcatgcctcactaccctcccatgggaatgcatcctatgggccagaggcccccc
aacatgcctccagtatctcatgggatgatgcctcaaatgatgcctccaatgggaggacca
caaatgggacagatgcctggaatgatgcagacagtgatgcccggaatgatggcaccccat
atgtctcatggccccatgcagccaacaggaccgccaggagtgaacagcatggattcgcaa
attggtttagctccccctggaactcagcctacacctccagtttgtgcagtgcaacaagcc
actccaaccaataactctactaatgaagagccctcaaaacagaaatctacgtggtcagag
cataaatcaccagatgggagaacatactattacaatactgagaccaagcagtctacctgg
gagaaaccagatgatctgaaaacccctgcagagcaattgttgtcaaaatgcccatggaaa
gaatacaaatctgattctggaaagccttattactacaactctcaaacaaaagaatcacgt
tgggcaaaacccaaagaacttgaagatcttgaagcaatgattaaagcagaagaaaacagc
aaatccgaagaatctgctccagtttcatctgctgcggttgcatcagggattccagctgct
gctgccagtgttcctgaaatgccagtacctatgccgtcagcccctgttgctcctgccgtg
gcctcagctccagaaacggagccttccgctatggccccagttatagaaaatgatgctggg
gtagctccttcaacagatgagcaggtacagccagcggctcctcctgttgtacaagagcag
agcatggaagttatcacaaactctgtggaagaaactccaaagcaagaatccttggaagtt
gtaccaaaaaaggaggaagaggaagcccaaccggttaaaaaaacgtatacctggaataca
aaagaagaagcaaagcaagcatttaaagaactattgaaggaaaagcgtgtgccatccact
gcctcttgggagcaagctatgaaaatgatcattaatgatccaagatacagcgctttggca
aaactaagtgagaagaagcaagcctttaatgcttacaaagtacatacagagaaggaagaa
aaagaagaagcaagattaaaatacaaagaagcaaaagagtcttttcagcgtttccttgaa
aatcatgaaaaaatgacatcaacaaccagatacaaaaaagctgaacaaatgtttggagag
ctggaagtctggaatgcaatttctgaacgtgatcgccttgaaatatatgaagatgttcta
ttcttcctgtcaaaaaaagaaaaggaacaagccaaacagctaaggaagaggaactgggag
gcattaaaaaacattctggacaatatggctaatgtcacttactctactacatggtcagag
gctcagcagtatctgatggacaatcctacctttgcagaagatgaagaacttcagaatatg
gataaggaggatgccttgatctgttttgaagaacacataagagcactggaaaaagaggaa
gaagaggagaagcagaaaggcttactcagggaaaggcgacgacagcgaaaaaacagagaa
tcgtttcagatatttttggatgagttgcatgaacatggtcagctgcactcaatgtcatcc
tggatggagttatatccaactattagttctgatattaggtttactaatatgcttggtcag
cctggttcaacagcactggatcttttcaagttttatgttgaagatttaaaagcccgctac
catgatgaaaagaagataatcaaagatattttaaaggataaaggatttgtagttgaagtg
tctactccttttgaagactttgtaacggtcatcagttccactaaaagagctaccacatta
gatgctggaaatatcaaactggctttcaatagcttgttagaaaaagcagaagcccgtgaa
cgggagagagagaaagaagaagctcgcaaaatgaaacgaaaagagtctgcttttaaaagc
atgttaaaacaagcaacacctcccattgaaatggatgcggtctgggaagatattcgggag
agatttgtaaaagagccagcatttgaagacatcactttagaatcagagagaaaacgaata
tttaaggatttcatttatttactggagcatgagtgtcagcatcatcattcaaagaataag
aagcactctaaaaaatcaaagaagcatcatagaaagaggtctcgctctcgttcgggctca
gaatctgaagatgacgatagccattcaaagaaaaagaggcaacgctcagactcacgctca
gtttctgaacgctcctccagtgcagaatctgagagaagctacaagaagtcaaagaaacac
aaaaagaaaagcaaaaagaggagacacaagtctgattctccagaatcggatgtggatcga
gaaagagagaaaaaagagagagaaaacgaaaaagaaagaagtaggcaaagatctgaatct
aagcataaatcgccacctaagaagagacctaacaaagattctcacaatcctgcaaccaac
agcgttcgagtacaagaaacatcagaagaagcggatcagattcggggtaattgggatacc
tctggtagtgaattaagtgaaggtgaacttgaaaaacaaaggaggaccctcttggaaaac
tggatgaagatcaataagaaatatttataccaaatatgtttacaaatttga
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integrated database retrieval system
