Thamnophis sirtalis (common garter snake): 106545269
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Entry
106545269 CDS
T06107
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03082
ATP-dependent chromatin remodeling
tsr03083
Polycomb repressive complex
tsr04110
Cell cycle
tsr04330
Notch signaling pathway
tsr04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106545269 (HDAC1)
03083 Polycomb repressive complex
106545269 (HDAC1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
106545269 (HDAC1)
04350 TGF-beta signaling pathway
106545269 (HDAC1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
106545269 (HDAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tsr03036
]
106545269 (HDAC1)
Enzymes [BR:
tsr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
106545269 (HDAC1)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
106545269 (HDAC1)
HDAC complexes
Sin3A-HDAC complex
106545269 (HDAC1)
BRAF-HDAC complex
106545269 (HDAC1)
REST complex
106545269 (HDAC1)
SHIP complex
106545269 (HDAC1)
MiDAC complex
106545269 (HDAC1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
106545269 (HDAC1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
106545269 (HDAC1)
Chromatin remodeling factors
NuRD complex
106545269 (HDAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Peptidase_C101
Dehydrin
SDA1_dom
RNA_polI_A34
Motif
Other DBs
NCBI-GeneID:
106545269
NCBI-ProteinID:
XP_013917248
UniProt:
A0A6I9Y2G0
LinkDB
All DBs
Position
Unknown
AA seq
492 aa
AA seq
DB search
MALTQGTKRKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPYKAS
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYVDIDIHHG
DGVEEAFYTTDRVMTASFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVMSKVMETFQPSAVALQCGSDSLSGDRLGCFNLTIKGHAKCVEFIKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALNTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQPIPEDAVPEESGEEEEEDPDKRISIRSSDKRIACEEEF
SDSEDEGEGGRKNVANFKKAKRPKTEEEEKEEEEKEEAEEFGRYDANAKCTDASNHYAEH
DAEIITTNIFTN
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgactcaggggaccaagcggaaagtctgctactactacgacggggatattgga
aactattactatggtcaaggtcaccccatgaagcctcacaggatcaggatgactcacaat
cttcttctcaactatggtctttacagaaaaatggaaatttatcgaccttacaaagcgagt
gccgaggagatgaccaaatatcacagtgacgattacatcaaatttctgcggtccattcgc
ccagataacatgtctgaatacagcaagcagatgcaacgattcaatgttggagaagactgc
cctgtgtttgatggactgtttgaattctgccaactatctacaggagggtctgttgcaagc
gccgtgaaactaaacaagcagcaaacagacatcgcggtgaactgggctggaggcttgcat
catgccaagaagtcagaggcgtctggcttctgttacgtcaatgacattgtcctggctatc
ctagaactgctgaagtaccaccagagagtcctgtatgttgacatcgacatccaccatggg
gatggtgtggaggaagccttctataccacagaccgtgtcatgacagcctccttccataag
tatggggaatatttcccaggaaccggggatctgcgggatattggtgcgggtaaaggaaaa
tattatgctgtcaactatcctctccgggatgggatcgatgatgagtcttatgaagccatt
ttcaagccggtgatgtctaaagtgatggagaccttccagccgagtgccgttgccctgcag
tgtggctcagattccttatcaggggacaggttgggttgttttaatctgaccattaaaggt
catgccaagtgtgtggagttcatcaaaagctttaatttgcccatgctgatgctgggaggc
ggcggctacacaatccgtaatgtggcccggtgttggacgtacgagacggctgtggcgttg
aacaccgagatcccgaatgagcttccttacaatgattactttgaatactttggcccggat
ttcaaactccacatcagcccttccaacatgaccaaccaaaacaccaatgaatacctggaa
aagataaagcagcgtctctttgagaacctgaggatgctcccccatgctcccggggtgcag
atgcagccaattccggaggatgctgtgccggaagagagtggtgaggaagaggaggaagat
cctgacaaacggatttctatccgctcttcagacaagagaatcgcctgtgaggaggaattc
tcggactcggaggatgaaggggaagggggtcgcaaaaacgttgccaatttcaagaaggcc
aaacggccaaaaacagaagaagaggagaaggaggaggaggagaaggaggaggcagaggaa
tttggtagatatgatgctaatgcaaaatgcacagatgcatcaaatcattatgcagaacat
gatgctgaaatcattaccaccaacatattcaccaactag
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integrated database retrieval system
