Thamnophis sirtalis (common garter snake): 106545349
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Entry
106545349 CDS
T06107
Symbol
SCAF4
Name
(RefSeq) splicing factor, arginine/serine-rich 15 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106545349 (SCAF4)
03041 Spliceosome [BR:
tsr03041
]
106545349 (SCAF4)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106545349 (SCAF4)
Spliceosome [BR:
tsr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
106545349 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
XMAP215_CLASP_TOG
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
106545349
NCBI-ProteinID:
XP_013917339
UniProt:
A0A6I9XN20
LinkDB
All DBs
Position
Unknown
AA seq
1071 aa
AA seq
DB search
MEAVNAFNQELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVXGPRFCKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGASSTTSVTEDATNNEGSPQSATIPSEPPQAGANSVDPVPQLPS
SDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPVIDNNVMAQVQAITAQLQTTTTQPS
EQKHDFQIPEQKTSFDKKLLDRFDYDDEPEAVEDTKKEEATPSPSLSQPTFGFPGEGLQQ
PVYPQLPNIDQFQQRMLGMQQDAMLHQVPLPPNGQMPSYGLLPTPQFTPIGQQVIQSSPQ
VQQPFQSSFPAQSESHLQKAHQQELEVDQHPTQEGKRHENRKSRSRSASRSPKRRRSRSG
SRTRRSRHRRSRSRSRDKRRHSPRSRSQERRERERERERRVKGLPPIKPETVSVCSTTLW
VGQLDKRTTQQDVGGLLEEFGLIESINMIPPRGCAYIIMVQRQDANRALQKLSRGNFKVN
QKSIKIAWALNKGIKPDYKQYWDVELGVTYIPWGKVKPEDLESFCEGGMLDNDTLSPEWK
GIPKKSENQLAQNGGAGSGDTAHNEQTSPVAKALPIQMPIPIPTPITVPPPQVPPHQPGP
PMVGTLQPPTFTPPLGIPPPGFGPGVPPPPPPPFMRPGFNPMHLPPGFLPPGPPPPINPS
VSVPPVSAPPSGGVNIPNSTVATINEDTTKDSSIGNPIPTVVSGARGNGENAEGSKGYPN
APPPVTSASISASVSQPVPLLGTQGVTSSPVIGLQAPSTGLLGARPGLIPLQRPPGMPPP
HLQRFPMMPPRHMPPHMMHRGPPPGPGGFGMPPPHGMKGPFPPPGHFARPSGMPGGGPGG
SEDNRDGRQFRNDRPPFTPHRDQERFGRRSFGNRIENERERYGNRNDEREHERLGNRERR
EWGRRSPERDRHRDLEERNRRFSGHRERDSRDREPHREKDENRGKEKPELTDRVDGVKNY
ESQSSKVENTDSVSELNKESEPIGVKPTEEVASESTSSLEKPTGSVAEAPR
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagtgaacgccttcaatcaggagctcttctcattgatggagatgaagcctcca
atttctcgtgcaaagatgattctcatcactaaagctgccattaaagctattaagctttac
aaacatgtagtccaaattgtagagaagtttattaaaaagtgtaaacctgaatataaagtt
cctggactgtatgttattgactccattgttcgccaatctcgtcatcaatttggaactgac
aaggatgttttngggccaagattctgtaagaatataactgccacattccagtatttatat
ctctgtccatcagaagataagagtaagatagttcgtgtcctcaacctatggcagaaaaat
ggtgtgtttaaaatagaaataattcagccacttctggacatggcagcaggagctagcagt
acaacctcagtgacagaagatgccaccaataatgaaggttcaccacaatctgctacaatt
ccatctgaaccaccacaggctggtgctaattcagtagatcctgtgccacagctgcctagt
tctgatgcatttgctgcggttgctcagttgtttcaaacaacacaaggacagcaactccaa
cagattctccagacttttcagcaacctcccaaacctcagtctccagtaatagataataat
gtaatggctcaggttcaagctatcacagctcagctgcagaccacgacaacacagccatca
gaacaaaagcatgatttccaaataccagaacaaaaaacatcttttgataagaagctgttg
gatcgctttgactatgatgatgaaccagaagcagtagaagatacaaaaaaagaagaggcc
acaccttctccttcactctctcaaccaacatttggatttccaggtgaaggcttacaacaa
ccagtttatcctcagcttccaaatatagatcagtttcagcagagaatgctgggaatgcaa
caggatgcaatgcttcaccaggtccccctccctccaaatggacagatgcctagctatgga
cttctgcctacaccacagtttacacctataggtcaacaagttatacagtcttcacctcag
gtgcagcagccttttcagtcttcttttccagcacaaagtgaatcacatttacagaaagca
catcagcaggaactggaagtggatcaacatccaactcaggaaggaaaaagacacgagaac
agaaagtcgagatctagatcagcatcaagatcacccaagagaagaagatcacgatctggt
tctcgaactcgaagatcacggcatcgtcgttctcgttctcgatcccgggacaagcgccgt
cattctcctaggtcacggtcccaggaaagacgtgagagggagagagagagagaacgcaga
gtaaaaggacttcctccaatcaaaccagaaaccgttagtgtttgcagtacaaccctttgg
gtaggccaactagacaaacgaacaacacagcaggatgttggaggtctcctggaagagttt
ggtctaattgaatctataaatatgatccccccaagaggatgtgcttatattataatggta
cagagacaagatgcaaaccgtgccctgcagaaactgagtcgtggtaactttaaagtcaat
cagaaatctataaagattgcttgggctttaaataaaggaattaagccagattataagcag
tattgggatgtagaattaggtgttacctacataccatggggtaaagttaaacctgaagat
ttggaaagtttttgtgaaggaggaatgctggacaatgatacacttagtcctgaatggaaa
ggaattccaaaaaaatcagaaaaccagttagcccagaatggaggagctggaagtggtgat
actgcacataatgaacaaacgtcacctgtagctaaagccttgccaatccaaatgcctata
cctatacctacaccaataacagtaccaccaccacaggtaccaccacatcaaccaggtcct
ccaatggttggtacccttcagcctcctacatttactcctccattaggaattccacctcct
ggatttggtcctggagttcctcctccaccaccaccaccatttatgcgaccaggcttcaat
ccaatgcatttaccaccaggttttcttcctcctggaccaccacctcccattaatccatcg
gtttcagttcctccagtttctgcccctccttctggaggagtaaatatcccaaattctact
gtggccactataaatgaagacactaccaaagactcttctatagggaaccctattccaaca
gtagtttctggagctagaggaaatggtgaaaatgcagaaggctccaaaggatatccaaat
gctccgccacctgtcacttctgctagtatatcagcttctgtatcccaaccagtcccactt
cttggtactcaaggagttacatctagtccagtgattgggcttcaggcaccttctactggc
cttttaggtgcccgacccggtttgataccacttcagagacctccaggaatgccaccacct
catctgcaacggtttccaatgatgccacctcggcatatgcctcctcatatgatgcacaga
ggtccgcctccagggccaggtggttttggaatgcctccacctcatgggatgaagggccct
ttcccacccccaggccactttgcaaggcccagtggaatgcctggaggtggtccaggagga
tctgaggataatagagatggaaggcagttcaggaatgataggccaccatttactccacat
agagaccaggaaaggttcggaaggaggtcttttgggaatcggatagaaaatgaacgtgaa
cgctatggcaaccgtaatgatgaaagagagcatgaacgccttggtaatcgagaaaggaga
gaatggggaagaagaagccctgaacgtgatagacacagagacttggaggaaagaaatcgg
cgtttcagtggacacagagagagagattctagagatagggaaccccatagagaaaaagat
gaaaatcgaggaaaggagaaacccgagttgacagacagagtagatggggtcaaaaactat
gaatctcagagcagtaaagtagaaaacacagactctgtttcagaacttaataaagagtct
gaacctattggtgtgaagccaactgaagaagtagcatctgagtctacctcatctcttgaa
aaacctactggctcagttgcggaggctcctcgctag
DBGET
integrated database retrieval system
