Thamnophis sirtalis (common garter snake): 106545650
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Entry
106545650 CDS
T06107
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106545650 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106545650 (COL3A1)
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106545650 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
COLFI
Collagen
Motif
Other DBs
NCBI-GeneID:
106545650
NCBI-ProteinID:
XP_013917758
UniProt:
A0A6I9Y3C5
LinkDB
All DBs
Position
Unknown
AA seq
880 aa
AA seq
DB search
MDKWTMNKLYHVILNSIECNGEIIKESVWITFPASTLRVKGENGLPGENGSPGSMGPRGL
PGERGRAGPPGTSGGGGSGPPGPPGPAGPPGHTGPPGPSGPHGYQGSPGEPGQAGAPGAP
GPPGMIGPPGPSGKDGETGPAGPAGSSGPPGPKGDAGAPGQPGGSGPPGPGGRDGNPGAK
GPPGAAGIPGAPGLSGARGPPGPSGTNGIPGQRGPPGEPGSRGGDGLPGKDGVRGPVGSI
GPPGPSGQSGDKGEPGPAGPHGPTGPRGGPGDRGEQGPPGPAGFPGGPGQNGEPGGKGER
GLPGERGESGPPGNAGPSGGPGAQGPPGSAGPKGERGGPGPAGSPGFPGGRGLPGPPGNN
GAPGSPGNSGPPGKDGHTGPAGSTGPAGPPGGVGPKGEPGTPGEKGPSGPKGNDGPPGPS
GISGVPGQRGIVGLPGGRGLPGNSGPPGVKGEDGKPGSNGSPGERGPPGQGGPPGISGAP
GEPGRDGNPGTDGLPGRDGSAGPKGDRGENGPPGVPGSPGHMGPPGNAGPPGKNGERGHS
GPLGPPGQSGSPGASGARGPPGPSGPPGKDGRVGYAGPIGPPGPRGNRGESGQAGPPGHS
GPPGPPGQPGSPGPCCGGNGNGRKGGGVDDMGYYGDQTSEGKIDMGEILASLKSVNSQIE
NIISPDGSRKNPGRNCRDLKFCHPELPSGEYWIDPNQGCKLDAIKVFCNMETGETCLSAN
PSSIPKKNWWTSLGPEKKHIWFGETMNGGFQFSYGDPDLPEEVADVQLAFLRILSSRASQ
NITYHCKNSIAYMDEASGNVKRALKFMSSTDSEIKAEGNNKFTYTVLEDGCTKHTDEWGK
TVFEYRTRKPMRLPVIDIAPFDIGASNQEFGVDVGPVCFL
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggacaagtggacaatgaacaaactataccatgttattctcaacagcattgaatgcaat
ggagaaattattaaggaaagtgtttggattacttttccagctagtactctcagagtcaag
ggtgaaaatggccttcccggagaaaatggttccccaggatcaatgggacccagaggtctg
cctggtgaaagaggacgagctgggcctccaggaacttcaggtggtggcggcagcggccct
cctggcccacctggtcctgctggccctcctggtcatactggtccgccaggtccatctgga
cctcatggataccaaggttcacccggtgaacctgggcaagctggagctcctggtgctcct
ggccccccaggaatgataggaccccctgggccttcaggaaaagatggtgaaacaggtccg
gctggtcctgcaggctctagtggacctcctggaccaaaaggagatgctggtgccccaggc
caacctggaggttctggtcctcctggtcctggaggacgtgatggaaatcctggtgccaaa
ggtcctccaggtgctgctggaattcctggtgctcctggtctaagtggagctcgtggtcct
cctggtccttctggaactaatggaatccctggacaaagaggtccacctggagagcctgga
agcagaggaggagatggtttacctggtaaagatggagtacgaggccctgtaggatccatt
ggacctcctggtccatctggccaatctggtgataagggagaacctggacctgctgggccc
catggcccaacaggaccccgtggtggcccgggtgatcgtggtgaacaaggcccacctggt
cctgctggcttccctggaggtcctggacaaaatggagaacctggtggaaaaggagaacga
ggccttcctggtgaaagaggtgaatctggacccccaggaaatgcaggtccatcaggaggc
cctggtgcacaaggcccacctggttcagcaggacctaaaggagaacgtggaggtccaggt
cctgcaggttcacctggctttcctggaggtcgaggcttacctggtcctcctggtaacaat
ggagcaccaggatcacctggcaattctggcccaccaggcaaagatggacatacaggccca
gctggttctactggcccagctggtcccccaggtggtgtaggtccaaaaggtgagccaggt
acaccaggagaaaaaggcccatcaggacccaaaggaaatgacggtccaccaggtccatca
ggaattagtggcgtacctggacagcgtggtattgtaggattgccaggaggaaggggccta
ccagggaattctggtccacctggtgtcaagggtgaagatggcaaaccaggaagtaatgga
agcccaggggaacgaggacctccagggcaaggaggtcctcctggcatcagtggggcacca
ggagaaccaggcagagatggtaatcctggaacagatggtctcccaggccgtgatggctct
gcagggccaaagggtgatcgtggtgaaaatggtcctcctggtgtgcctggatctccaggt
catatgggtcccccagggaatgctggtccacctggaaaaaacggtgaaagaggacattcg
ggtccactgggtcccccaggtcaaagtggaagtccaggagcttcaggtgctagagggcct
cctggaccaagcgggccacctggcaaagatggaagagttggttatgcaggccccattggt
cctccaggtcctcgtgggaacagaggtgaaagtggacaagcgggtccacccggtcacagt
gggcctcctggtcctcctggtcaacctggatcacctggtccatgctgcggtggtaatggt
aatggtcgcaaaggtggtggtgttgatgacatgggctactatggcgatcagacatccgag
ggcaaaattgacatgggagagattttagcttcactgaaatcagtcaacagccagattgaa
aacatcattagccctgatggttcacggaagaatcctggccgtaactgcagagatctcaag
ttctgccatcctgaacttccaagcggagaatactggatcgatcctaaccaaggttgcaaa
ctggatgccatcaaagtattctgcaacatggagactggggaaacatgcctcagtgccaat
ccctcaagtatcccaaagaagaactggtggacaagccttggtcccgaaaagaagcacatt
tggtttggagagactatgaacggaggcttccagttcagctatggagatccagatcttcct
gaagaagttgcagatgttcagctggcattcctcagaatcctttccagccgagcctcccaa
aacatcacctaccactgcaaaaacagcattgcctatatggacgaagccagtgggaatgtg
aagagagcactcaagttcatgagttctactgatagtgaaatcaaggcagaaggaaacaac
aaattcacatacacagttctggaagatggctgtactaaacatactgacgaatggggtaaa
accgtctttgaatacagaacacgcaagccgatgaggttgccggtgatagatattgcacct
ttcgacattggcgcttccaatcaagaatttggtgtggacgttggcccagtttgcttctta
taa
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