Thamnophis sirtalis (common garter snake): 106546012
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Entry
106546012 CDS
T06107
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03013
Nucleocytoplasmic transport
tsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106546012 (UPF3A)
03015 mRNA surveillance pathway
106546012 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106546012 (UPF3A)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106546012 (UPF3A)
mRNA cycle factors
P-body specific factors
106546012 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
106546012
NCBI-ProteinID:
XP_013918244
UniProt:
A0A6I9XQC4
LinkDB
All DBs
Position
Unknown
AA seq
472 aa
AA seq
DB search
MEAPLQRESPRRVSETPSSSPGPPPPPPPPSNLGLPPGKQQREEKRAALSKVVIRRLPPN
FTKEQLEEQLHPLPAHDYFEFCSSDPSLYPHLYSRAYINFRNPDDILLFRDRFDGYVFID
NKGLEYPAVVEFAPFQKISKKKLKKKDAKSGSIEDDPEYRKFLESYCAEEEKICANPETL
LGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRESEKKRLREDEKRKRR
EEERRKRKEAEKQKKIAEKEIRIKLLKKPEKGDEQTTEKHREKEKGDIEDNKWEKSPAHG
SLKSKPLEVPLKELKEKSQNDSDKEQRDSERRFREKEPERQRYRLEDGRKHRTHYEFDKY
VRRNEDEPKWEKGYNQDRGKKVNYNYSFTVDTVDKLGKEDKCDDMASKKERIRNKDRPAM
QLYQPGIRIRTHMGPTSRFYDCAEKTSQEVCDRRYEADNSAGGSSEKNEDVE
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggaggctccgctccagcgagaatccccgcgtcgcgtgtcagagacgccgtcgtcctcc
ccggggccgccgcccccgccgcccccgccttccaacctggggctgccgccgggcaagcaa
caacgggaagaaaaaagagcggcgctgagtaaagtagttattcgccggcttcctcctaac
tttactaaggagcagctagaagaacaactccatccacttccagctcatgattattttgaa
ttttgttcctctgatcccagtctttatccccatctctactcaagagcatatattaatttt
agaaatcccgatgacatccttctttttagagatcgctttgatggctatgtcttcattgac
aataaaggtctcgaatatcctgccgttgttgaatttgcaccattccaaaagatttctaaa
aagaaactaaagaagaaagatgcaaaatctggaagcatagaagatgatccagaatataga
aaatttttagaaagttattgtgctgaagaagaaaaaatatgtgccaaccctgaaactctt
ctgggagaaattgaagcaaaaacaagagaactcattgctagaagaaccaccccacttttg
gaatatattaaaaatagaaaattagaaaaacagagaattcgagaagagaaaagggaagaa
agaaggaggagagaatcagaaaaaaaacggctaagagaagatgagaaacggaaacgccga
gaggaagaaagacgcaaaagaaaagaagctgagaaacaaaagaagattgctgaaaaagaa
ataaggattaagcttcttaagaaacctgaaaagggagatgaacagactacagaaaagcac
agagaaaaagaaaaaggtgatattgaagacaataaatgggagaaatcaccagcacatggg
agtttaaaatccaagccattggaagttcctctaaaggaacttaaggaaaaatcacaaaat
gacagtgataaagaacaaagagattcagagagaagatttcgtgaaaaagaacctgagaga
caaaggtatcggttggaagatggccgaaagcacagaactcactatgaatttgacaaatat
gtgagacggaatgaagatgaaccgaagtgggagaaagggtacaaccaagaccgaggaaag
aaagtgaactacaactacagcttcactgtggacacagtagacaaactgggtaaagaggac
aagtgtgatgacatggcatccaaaaaggagcgcataagaaataaggatcgcccagccatg
cagctgtaccaaccaggaattcgcattcgaacacatatgggacctacaagtaggttctat
gactgtgctgaaaaaacttctcaagaagtttgtgacagaaggtatgaggcagacaactca
gctggtggtagttctgagaagaatgaagatgtagaataa
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