Thamnophis sirtalis (common garter snake): 106546354
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Entry
106546354 CDS
T06107
Symbol
HPS5
Name
(RefSeq) Hermansky-Pudlak syndrome 5 protein
KO
K20191
Hermansky-Pudlak syndrome 5 protein
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tsr04131
]
106546354 (HPS5)
Membrane trafficking [BR:
tsr04131
]
Endosome - Lysosome transport
Others
BLOC-2 complex
106546354 (HPS5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_HPS5
Beta-prop_HPS5
WD40_WDHD1_1st
PEP5_VPS11_N
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_THOC3
CFAP43_N
Beta-prop_WDR3_1st
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
Beta-prop_VPS8
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
106546354
NCBI-ProteinID:
XP_013918684
UniProt:
A0A6I9XRJ6
LinkDB
All DBs
Position
Unknown
AA seq
1141 aa
AA seq
DB search
MAAIPESYSHVLAEFECLSPLLSALRLDSSRLKCTCIGISRKWLALGSSGGGLNLIQKDC
WKQRLFLTHKEGAISSVAFCLHDEDYVAVATSQGVVVVWELNQERRGKPERIYISSEHKG
RKVTALCWDTNALRVFVGDHVGKVSVIKINSSKQGKAATAFVMFPIHIITTVDSRVVQLD
YLDGRLLISSLTRSYLCDTEREKFWKIGNKERDGEYGACFFPIGKSGANQQSLIYCARPG
SRIWEVNFEGEVLSTHQFKQLLSAPSLPVITIREDPEYNASACSPQSLAFPKLLYLSEHC
IMTWTERGIYIIIPQNVQVLLWSEVKDIYDIATYKNELFCLHTNGKVSHLSLLTIEKCVE
RLLRRSFWTLAAKMCCLFQNSIVLCRARKLLPADKLEHLKSQLDLSTETDLITQLEELIS
KLEPLDSACSSRRSSISSHESFSILDSGIYRVISRRNSQSDEDSCSLHSQTLSEDERLKE
FHIQQEEEQLEHDSISHASLVVDNVRSETFLPFSIPLSFRSPSPLVSLQAVKESVSSFVR
KTTEKIEKIGTLHLNPDRIRQDVKDEEPLSEVPARLEAQPLEKEGEQQSQSPEEDYLKDL
KAVTTETLSRLQDPLVLLQPQNLTAVLLDWIPFLEETCGLKAAVILHNETTEGDKEMPFQ
TEDKSFQENALKEQHNEPEDKELNIVLGINGESENPNTIQDEICEENTNSVTNYQADNIL
HEQPLRTETVFNQPYQIKSPFFIPQNIKKDLTELTTLCFELNVYESSQVNNEPGVLPDGS
CALASKFIRDYFFLLDLERLKRCIITCHNNHPEVWDVYMEGLKELTLTSPVTVALENGDM
FKTLKLLVDLGPWDAPLLLAHAERLYKKFRETSLRPLTRFYPLIGPSDIKQICKNNPEHF
LAYLDSLIKSKAEDKRLSFLRSLLHPDSLQLEWLCLAMSHDAPHKTSTMDAQGNPWPHSH
LFTWGYNQLILLLLNLPTDVLRKEKMTDICQSKGFWPGYLSLCLELDRRSEVFTKIVHLD
DMELLNTKDGTVPKTIEEWKFLLCLVKSHHNIHVSQRDTAVTNGTPEWSNSVTVENVALL
AARIIGPDRSLQMLQECDLVAELSERFANICEILRIAEKRQRALIQSMLERCDRFLWSQQ
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaatacctgaatcttacagccatgtgttggcagagtttgaatgtcttagtccc
ctgctttctgctctcaggctagattccagtcgtctgaagtgtacatgtatcggaatttct
cgaaaatggttagcactaggaagttcaggtggaggcctaaatctcatccagaaagattgt
tggaaacagaggcttttccttactcataaggaaggtgccatttcctctgttgccttttgt
ttgcatgatgaggattatgttgctgtagctaccagtcaaggcgttgttgttgtatgggaa
ttaaatcaagagcgccgtgggaagccagagaggatttatatctcttctgagcacaaaggc
agaaaagtaacagctctttgttgggatactaatgcactccgtgtttttgttggtgatcat
gtggggaaagtgtctgtgatcaagattaattcctccaaacaaggaaaggctgctactgca
tttgtgatgtttcccattcatattataaccacagttgattctcgtgtggttcagcttgat
tatctggatggcagattgcttatctcttctcttacacgctcttatttatgtgacacggag
agggaaaagttttggaaaattggaaacaaggaaagagatggtgaatatggagcttgtttt
tttcccattggaaagagtggggcaaatcaacagtctctgatatattgtgcacggcctggt
tcacggatatgggaagtcaactttgaaggggaagtgctgagtacacatcagttcaaacaa
ttgttgtcagcgccatctcttcctgttattactatcagggaggatccagagtataatgct
tccgcatgctctcctcagtccttggcattccccaagctgctttatttaagtgagcactgt
ataatgacatggacagaaagaggcatttatattatcatccctcagaacgtccaagttctt
ctctggagtgaagtgaaagacatctatgatattgcaacatataaaaatgaactcttctgc
ttacataccaatggaaaagtctcgcatctctcccttctgacaattgaaaaatgtgtggaa
cgattgctaagaagaagtttttggactcttgcagccaaaatgtgttgtctttttcagaat
tctattgttttgtgccgggcaagaaaacttcttcctgcagataagctggaacatctgaag
tcacagttggatctgtcaacagaaactgatctcattactcaacttgaagaactgatctca
aaacttgagcctttagattctgcatgcagcagcagaagaagcagtatttcttcacatgag
agtttcagcatattagattctggaatttatcgtgttattagtagaagaaacagtcagtct
gatgaagattcttgctccttacatagccaaaccttatcagaagatgaaaggctgaaagaa
tttcacatacaacaagaagaagaacagcttgaacatgacagcatatctcatgcttctctg
gtggtggacaatgttcggagtgagacttttcttccattcagtattccattatcattccgt
tccccatctcctctcgtctcccttcaagctgttaaggaaagtgtttctagttttgtacgg
aaaaccacagaaaaaattgagaaaattggtactcttcatctgaatcctgatagaatcaga
caagatgttaaagatgaagagccactctcagaagtgcctgccagattagaagctcagcct
ctggaaaaagaaggtgagcaacagagccagtctccagaagaggattaccttaaagatctc
aaagcagtaactacagaaactctgtccagactccaggatccacttgttttgttacaacca
caaaacttgactgcagttttgctggattggattccatttctagaagaaacctgtggatta
aaagcagcggttattttacataatgagacaactgagggagacaaagaaatgccttttcaa
actgaagacaaatcttttcaagaaaatgcgctaaaggaacaacacaatgagcccgaagat
aaggaattgaacatagtattgggaataaacggtgaaagtgaaaatccaaatacaatacag
gatgaaatttgcgaagaaaatactaattcagttacaaattatcaggctgataatatacta
catgaacagcctttgaggacagaaacagttttcaaccagccttaccagattaaatcccca
ttttttataccacagaacattaaaaaagacctgacagagttgacaactttatgttttgaa
ttaaatgtatatgaaagttcacaagtaaataatgagccaggtgtgttacctgatggttca
tgtgctctagcttctaagttcattagagactattttttcctccttgatctagaaaggttg
aagaggtgtattattacctgtcataataatcatcctgaagtctgggatgtctatatggaa
ggtttgaaagaactgactttgactagccctgtgacagtggccctcgaaaatggagatatg
tttaaaacactgaagttgctagttgatttagggccttgggatgctcctcttttgctggca
catgctgaaaggctttataaaaaattcagagaaacttctctaaggcctttgacccggttc
tatcctttgattggaccttcagatatcaagcaaatttgtaaaaataatcctgaacatttt
ctagcatatttagacagccttataaaatcaaaggctgaggacaaacgtttgtcattcctt
cgatcccttctccatccggattcattacaattggagtggctgtgtttggcaatgtctcat
gatgccccgcataaaacaagcacaatggatgctcaaggaaatccatggccacattcgcat
ttgtttacttgggggtataatcaactgattttacttttgcttaatcttccgactgatgtt
ttaaggaaggagaaaatgactgatatttgtcaaagcaaaggcttctggcctggatatctt
tctctttgtttggaattggatagaagatcagaagtatttacaaaaattgttcatttggat
gacatggaattattgaacaccaaagacggaactgttccaaagacaatagaagaatggaag
ttccttctttgccttgtgaagagtcatcacaacatccatgtttcacaaagggacacagct
gttactaatggtactcctgaatggtcaaattctgttactgttgaaaatgttgcactcctt
gcagcgagaataattggtccagatcgctctttgcagatgttacaggaatgtgatttggta
gctgaattatcagaaagatttgccaacatttgtgagatactaagaattgctgaaaaacgg
caaagagccttgatccagtccatgctagaaagatgtgaccgatttctgtggtctcaacaa
gcataa
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