Thamnophis sirtalis (common garter snake): 106546572
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Entry
106546572 CDS
T06107
Symbol
FDFT1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr00100
Steroid biosynthesis
tsr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
106546572 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tsr01006
]
106546572 (FDFT1)
Enzymes [BR:
tsr01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
106546572 (FDFT1)
Prenyltransferases [BR:
tsr01006
]
Terpene biosynthesis
Squalene/phytoene synthase
106546572 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SQS_PSY
SCC3_C
Motif
Other DBs
NCBI-GeneID:
106546572
NCBI-ProteinID:
XP_013918943
UniProt:
A0A6I9Y4J1
LinkDB
All DBs
Position
Unknown
AA seq
454 aa
AA seq
DB search
MASCSSKAATSLFKRTLAFSPPRASGGGSSACLTGGGRLRTCGGTPRLPQRSRPRFLVSQ
AAPPPLLLFQDSLSDSLRVCYKYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALDTVE
DDMTISLEAKVPMLHNFHSYLYQPDWKFMDSREKDRQVLEDFPTISLEFRNLAKVYQDVI
TDICHKMGLGMAEFLEKKVNSNKEWDKYCHYVAGLVGIGLSRLFSASELEDPVVGHDVEL
ANSMGLFLQKTNIIRDYLEDQLEGREFWPKEVWSKYVKKLSDLAKPENIDKAVQCMNELI
TNALHHVPDVLTYLSRLKNQSVFNFCAIPQVMAIATLAACYNNQQIFKGVVKIRKGQAVT
LMMDATNIQAVKTIMYQYMEEIYQKVPSTDPSSAKTQQIVNTVQSMSLPSGTLVSRTHYS
PLYFSCIMILAALSWQYLNTVSKAAEEYVHTGEN
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggccagctgcagctccaaagccgctacgtcccttttcaagcgcaccttggccttttct
ccaccgcgtgcaagtggcggcgggtcgagcgcttgtctgactggcggtggccggttgcgg
acctgcggcggcacccctcgtctcccgcagcgctcgcggcctcgatttctggtctctcag
gctgcccctccgcctctgctcctttttcaggactcgctcagcgacagcctccgggtgtgt
tacaagtacttgaaccaaaccagtcggagcttcgccgccgtcatccaagctctggacggg
gagttgcgccatgcagtgtgcatcttctatttggttctccgagctctggatactgtagaa
gatgacatgactatcagtcttgaagctaaggtccccatgttacacaattttcactcctac
ttatatcagccagactggaaatttatggacagcagagagaaggacagacaagtactagaa
gactttccaacgatttccctggagttccggaatttggcaaaagtctatcaagatgtgatt
actgacatttgtcacaagatgggtcttggtatggcagagtttttggaaaagaaggtgaat
tctaacaaagagtgggacaagtattgccactatgttgctggcctggtgggaattggcctc
tctcgactcttctctgcctcagaattagaagatcctgttgtcggtcatgatgtagaactg
gctaactccatgggactctttctgcagaaaaccaacatcattagggactatctggaggac
caacttgagggcagagaattctggcccaaagaggtttggagcaaatatgtgaagaagctg
tcagatctggctaaaccagagaacattgacaaagccgtccagtgtatgaatgagctcatt
accaacgccctacatcatgttcctgatgtcttgacatatttgtcccgcttgaagaatcaa
agtgtgttcaatttctgtgctattccacaggtgatggctatagccaccttggcagcctgc
tacaacaaccaacagatcttcaaaggtgtggtgaagattcgaaagggacaagcagtcaca
ttgatgatggatgctactaacatacaggctgtcaaaaccatcatgtaccaatatatggaa
gagatctaccagaaggtcccaagcacagacccttcctctgccaaaactcaacagattgtc
aacactgtccaatccatgagcttacccagtggtaccctggtctcccggacccattattca
cccctctatttttcctgcattatgattttagctgccttgagctggcagtatctgaacact
gtctcaaaagcagcagaggaatatgtgcacactggtgagaactga
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