Thamnophis sirtalis (common garter snake): 106546608
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Entry
106546608 CDS
T06107
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03015
mRNA surveillance pathway
tsr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106546608 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
106546608 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106546608 (SYMPK)
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106546608 (SYMPK)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106546608 (SYMPK)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106546608 (SYMPK)
U7-dependent histone pre-mRNA processing factors
106546608 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
RVT_1
Motif
Other DBs
NCBI-GeneID:
106546608
NCBI-ProteinID:
XP_013918991
UniProt:
A0A6I9XYS0
LinkDB
All DBs
Position
Unknown
AA seq
897 aa
AA seq
DB search
MKDMLNHFAKGKIFTKLDLREAYYRIRIRKGDEWKTTFNTPLGSFQYKVMPFGLQGAPTV
FMQYINEVLHNHLYCGVLIYLDDILIFSETLEEHVKLVQKVLKKVLAAKLYAKLSKCEFH
KTSLDYLGYRISNKGVEMDPGKSALADLLPCLFQSMNIRTLMRIMFQDGFDLPMEPLTLP
LSLAGVEQIKQAKEAVKGEKIAKPEGVLIKRRLSTLNLGQAISVVGAASPASPSTEILQA
KRRPEPIIPSTQPRLVGASGRKKIFRLSDVIKPLTDTQKEKLKLAAVKRILRSEKAVAYS
GAAHARVKILSSLVTQFEVPLKQEILAFVLDDIRNRLDLAFAWLYQEYNAYLSQYPTGSL
SNYDECLIGLLSGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTL
RDLIFKRPSRQFEYLHVLLDLSSHEKDKVRQQALLFIKRMYEKDHLREYVEKFALNYLQL
LVHPNPPSVLFGADKDTEVAAPWTEETIKHCLYLYLALLPQNHKLIHELASVYTEAIADI
KRTILRVIEQPIRGMGMNSQELLKLVKNCPKGAETLVTRCLHSLTDKVPPSPELVKRVRD
LYNKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSTVSP
LNPGELLIALHNIDSTKCDMKSIIKATNLCFAEHNVYTSEVLAVVMQQLMEQNPLPMLLM
RTVIQSLTMYPRLGGFVMNILSRLILKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQ
QLSAVFEKCPELREPLLAHVRSFTPHQQAHVPNSTMAILEATIKQETEGKELQPLEEGRG
PAPPRTKTLRREREEEAEPQPLLPRVSQDMIALRLAQEKALKRQLEEEQKLKQQQQQ
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatatgttgaaccactttgctaaaggcaaaatcttcaccaagctggacttgaga
gaggcatattaccgcatacgaatacgaaaaggggatgaatggaaaaccacatttaacact
cccctgggaagcttccagtacaaagtcatgccttttgggctacaaggagcacccacagtc
ttcatgcagtacataaatgaagtgctacataaccacctgtactgtggagtactcatttat
ttagatgacatcttgattttctctgagaccctagaagaacatgtgaaactggtgcagaaa
gtcctgaaaaaagttctagctgccaaactgtacgcaaaattgtcaaagtgtgagttccac
aagacctcgctagattacctggggtatcgtatttccaacaaaggagtagaaatggatcca
ggaaaatccgcattggctgacctgttgccatgtctattccaatctatgaatatccgtact
ctcatgcgaatcatgtttcaagatgggtttgatctccccatggagccgttaactctcccg
ctttccctggcaggagtggagcagatcaagcaggccaaggaagctgtcaaaggggagaag
atagccaagccggaaggggtcttgatcaagcgacgcctttccaccctgaacctcggccag
gccatctcggtggtgggagccgccagcccggcttctccctccacggagatcctgcaggcc
aagcggcgcccggaacccatcattccttccacccagccaaggctggtgggtgcgagtggc
cgcaagaagattttccgcctgagcgacgtgatcaagcctctcacggacacccagaaggag
aagctcaaactggccgctgtcaagcggatcctgcgctccgagaaggccgtggcttacagc
ggggcggcccacgcccgggtgaagatcctctcctccctggtgacccagtttgaggtccct
ctgaagcaggagatcttggccttcgtgctggacgacatccgcaaccggctggacctggcc
ttcgcctggctctaccaggagtacaacgcttacctgagccaataccccaccggctccctc
agcaactacgacgagtgtctcatcggcctcctctccggcctgcaggagaagcccgaccag
aaggatgggatcttcaccaaggtggttctggaggcccccctgatcacagagagcgccctg
gaagtcatacgcaagtattgcgaggatgagagccggacatatttgggcatgtcgaccctc
cgcgatctgatcttcaagcgcccatccaggcagttcgagtacctgcacgttctcttggac
ctcagctcccacgagaaggacaaggttcgccagcaagccctcctcttcattaagcggatg
tacgagaaggaccacctgcgggaatacgtggagaagtttgccctgaattacctgcagctg
ctggtccaccccaacccgccttccgttctctttggcgctgataaagatacagaggtggcc
gccccctggaccgaggagaccatcaagcactgcctctacctctacttggccctccttccc
cagaaccacaagctcatccacgagttggcgtccgtctacacggaggccattgcggacatc
aagcggaccatcctcagggtgatcgagcagccgatccgcgggatgggcatgaattctcag
gagctgctgaagctggtgaaaaactgccccaagggagccgaaactctggtcacccggtgc
ctccacagcctgaccgataaagttcctccgtctccggagctggtgaaacgagttcgagat
ctctacaacaagaggctcccggatgtccgattcctcatcccggttctcaacggcttggaa
aagaaagaggtgatccaggctttgcccaagctcatcaagctgaatcccatcgtggtgaag
gaagtctttaaccggctcctgggaacccaacacggtgaagggaattccaccgtttccccc
ctcaatcccggggagctcctgatcgccctgcacaacatcgattccaccaagtgcgacatg
aagtccatcatcaaagcgaccaacctgtgctttgccgagcacaacgtctacacctcggag
gtgctggccgtggtgatgcagcagctgatggagcagaaccccctccccatgctcctcatg
cggacggtcatccagtcactcactatgtacccccgcctgggcggcttcgtcatgaatatc
ctttcgcgcctcatcttgaagcaggtgtggaagtaccccaaagtctgggagggcttcatc
aaatgctgccagcgcacgaagccccagtccttccaagtcatcctccagttgcccccacag
cagctcagtgccgtgttcgaaaagtgcccggagctgagggagcctctgctcgctcacgtc
cgctccttcaccccacatcagcaagcccacgtccccaattccaccatggccattctggaa
gccaccatcaaacaggaaacggaaggcaaagagcttcagcccctggaggaagggaggggc
cctgctccacccaggacgaagaccctgaggagagagagggaggaggaagcggagccccag
cctctgctgcctcgggtgtcccaggacatgatcgccctgcgcctggcccaggagaaggcc
ctgaagaggcagctggaggaggagcagaagctgaagcagcagcagcagcagtag
DBGET
integrated database retrieval system
