Thamnophis sirtalis (common garter snake): 106546625
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Entry
106546625 CDS
T06107
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03013
Nucleocytoplasmic transport
tsr03015
mRNA surveillance pathway
tsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106546625
09122 Translation
03013 Nucleocytoplasmic transport
106546625
03015 mRNA surveillance pathway
106546625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106546625
03041 Spliceosome [BR:
tsr03041
]
106546625
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
106546625
Spliceosome [BR:
tsr03041
]
Common components
Common spliceosomal components
Cap binding complex
106546625
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
DUF1003
LUC7
NDUF_B5
Uso1_p115_C
Motif
Other DBs
NCBI-GeneID:
106546625
NCBI-ProteinID:
XP_013919010
UniProt:
A0A6I9Y9P0
LinkDB
All DBs
Position
Unknown
AA seq
783 aa
AA seq
DB search
MSRRRHRDENDEQPYKKRKVSIAERLESLICKVGEKSLFSLESRIEGLAGVLEADLPNYK
SKILKLLCTVARLLPQKMTIYTTLVGLLNARNYNFGGEFVEAMIRQLKECLKANLYNEAV
YLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRCDWYVYAFLSSLPWVGKELY
EKKDTEMEQILSTVETYLKRRQKTHVPMLQVWSADKPHPQEEYLDCLWAQIQKMKKDHWQ
ERHIPRPYLAFDSVLCEALQHNLPPFTAPPHTADSVYPMPRVTFRMFDYTDDPEGPVMPG
SHSVERFVIEENLHCIIRSFWKERKTCAAQLTSYPGNNKIPLNYHIVEVIFAELFQLPVP
PHTEIMYTTLFIELCKLQPGSLPQVLAQATEMLYMRLDTMNTICVDRFINWFSHHLSNFE
FRWSWEDWSDSVSEDLDRPRPKFVREALEKCMRLSYHQRIIDIVPASFSVLTPANPACIY
KYGDESNKSLPGYNVALCLSIAIKNKASNDEIFTILKDVPNLNQEEDDDEGFSFNPLKIE
VFVQTLLHLASKSFSHSFSALGKFREALRTLAESDEGKLHVLRVMYEVWKNHPQMISVLV
DKMIRTQIVDCAAVANWIFSPELSHDFTRFYIWEILHSTIRKMNKHVMMIQKELEEAKER
LAKQQKRRDDSRRNERENWPIEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTEHLVR
CETGGIDVITPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDHHILAVFQQFCA
LQG
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcaggcggcacagggacgagaatgacgaacaaccatacaagaaaaggaaagta
tctattgcagaacgattggaatctctaatatgcaaagtgggagaaaagagtcttttctct
ttggaaagtagaatagaaggcttggctggagttttggaggcagatctaccaaactacaaa
agcaaaatactgaaactcctttgcacagttgcacgtctgttgccacagaagatgactatt
tacacaactctcgttggcttgttaaatgccagaaattacaattttggtggagagtttgta
gaagcgatgatacgtcaactgaaagaatgtttgaaagccaacctgtacaatgaagctgtc
tatttagtgcgctttctttctgatcttgtgaattgtcacgtaatagctgcaccctcaatg
gtagccatgtttgagaatttcgttagtgtgacgcaggaggaggatgtacctcaggtgcgg
tgtgactggtacgtgtatgcatttctgtcatccttaccttgggtggggaaggagctgtat
gagaaaaaggatactgaaatggagcagatcttgtccactgttgaaacctatctgaaacgg
cgtcagaagactcatgtgcctatgctacaagtttggtccgctgataaaccacatccccaa
gaagagtacttagattgcctttgggctcagattcagaaaatgaagaaggaccactggcaa
gagaggcacatcccaaggccatacctggcattcgacagcgtgctttgtgaagcactgcag
cacaacctgcctccttttacagccccaccccacacggcagattccgtttacccgatgcca
agagtcaccttccgaatgtttgactacactgatgatcctgaaggaccagtcatgcctggg
agccactctgttgaaagatttgtgattgaagaaaacctccactgcatcatcagatcattt
tggaaagagagaaagacatgtgctgctcaattaacaagctatccaggaaacaacaagatc
cctctgaattaccacattgttgaggtaatttttgctgagttgtttcagcttcccgttccg
cctcacacagaaatcatgtacacaacactttttattgaactctgtaaacttcagcctgga
tctttacctcaagttcttgcacaagccacagaaatgctgtatatgcgcttagatacaatg
aatactatctgcgtagatcggttcattaattggttttcccatcatcttagtaattttgag
ttccgttggagctgggaagattggtcagattctgtttctgaggatcttgacagacccagg
cctaagtttgtaagagaagcactggaaaaatgcatgaggctttcctaccatcagcgaata
atagatatcgttcctgctagtttttcagttcttactcctgcaaatccagcatgtatttat
aaatacggagacgaaagtaacaaatctcttcctggatataatgttgcactctgtttaagc
attgccattaaaaataaagcaagtaatgatgaaatcttcaccattttgaaggatgtgccc
aatcttaatcaggaagaagacgatgatgaaggcttctcattcaatcctttaaaaatagag
gtttttgtccagacactattgcacttagcctcaaagtcattcagtcactctttcagtgct
ctgggaaaatttcgagaagccctcagaactctggctgaaagtgatgaagggaagcttcac
gttcttagagtgatgtatgaagtatggaagaatcatccccagatgatttctgtactggtg
gataagatgattcgaacacagattgtggattgtgctgcagtggcaaactggattttttct
ccagagctatctcatgattttacaagattttatatttgggagatcttacactctaccatt
cgtaagatgaacaagcatgtgatgatgatccaaaaggaactagaagaagccaaagaaaga
ttagccaagcaacaaaaaagacgtgatgattctcgaaggaatgagagggaaaattggccc
attgaagaacagattgaacgcttgcaagaaaaagttgaatcagctcaaagtgaacaaaaa
aaccttttccttgtaatattccagcgttttattatgatcctaacagagcatctagtacga
tgtgaaacaggagggattgatgtaattacaccttggtacaagaactgtatagagaggctg
cagcaaatcttcctacagcatcatcagatcatccaacagtatatggtgaccttggagaac
cttctatttacagcagaattggatcatcacatactcgctgtatttcagcagttctgtgca
ctccagggctga
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