Thamnophis sirtalis (common garter snake): 106546748
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Entry
106546748 CDS
T06107
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr04510
Focal adhesion
tsr04512
ECM-receptor interaction
tsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106546748
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106546748
09142 Cell motility
04820 Cytoskeleton in muscle cells
106546748
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tsr04147
]
106546748
00536 Glycosaminoglycan binding proteins [BR:
tsr00536
]
106546748
Exosome [BR:
tsr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106546748
Glycosaminoglycan binding proteins [BR:
tsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106546748
Hyaluronan
Extracellular matrix or blood plasma proteins
106546748
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
7tm_3
VWA_2
ANF_receptor
vWA_SIBA-E
VWA_3
Motif
Other DBs
NCBI-GeneID:
106546748
NCBI-ProteinID:
XP_013919180
UniProt:
A0A6I9Y9S4
LinkDB
All DBs
Position
Unknown
AA seq
2039 aa
AA seq
DB search
MLLTLFLVILGTQASKTQQPASESVDVVLLIDSSNTLGRQGFLSLKNNVNRMISNLPIGP
NKYRLALVQYSDDIHVEFQLDNFRGKNPMLNHIKKIFSFRGGPLRTGNALQKIHKTIFKA
PRRDRHQVLIVTTSGVSQDDVEGPATLMREDGIKIIALGMPNASEQDLQSMATHPFSYHF
DTLKDLQKFSSNILSVIESAVTIDESLVISTTNPPSTTFAHSIPIKVADCSDDLIADVVF
VVDEVVSPTNSEYIVSFLQNTATSLDVQKSCVRIGLVTYSNEPRVLSQLNTETEINNLVF
KIKSFSPREGKAKLGAALNFTREIIFTESAGSRKTEGVEQIATIITHRSSEDSVTEASSL
LLQKGVTVFAISIEGANITQLGGVVSYPPNRNIIKVDHFSNLTDKSKIFKEKLFEHIHLF
FAQAERTKEFRSGCMETEKADIYFLVDGSSSISPSDFIKMKTFLKEVIKIFTIGRNHVRF
GVVQFATVYKKEFELDEYTKISHVEKAINNIIQRGGDTYTGAAIRSMQLLFEKAKNQREG
KVPSYLIVLTDGKAHDNVLEPSKMLRKSAVNIYAIGVKPANITQLNEIADSKSKVYYAEQ
FESLKNIKNKIVQDICSEKACEKMKADVMFLVDSSGSISDQDFEKMKKFMQELVDKCSVG
LDEVQFGVVQFSSTNKEEFQLNSSKDYIINAIGNMAQMQQNTYTGNALQFVSDYFKPAKK
ARPSVNKILILLTDGEAHDDVRKPASALRKEGVIIYSIGIIGANGTQLLEISGTAKNMFY
LTDYDSLKYIEKDIMFHICSPYKACQRITRLDLVFVIDSSSSIGETNYALISNFIIGIVN
KSVVGEEHVQFGAVKYSDNPEIMFKLNTYSKRSDIIKFIQDNNTLLEGRTYTAKALQFSK
DLLTKENGSRIHHGVPQVLMVITDGVSHDKAILNSTSNELRKKGTIIYAIGIKDANPEEL
AIMAGSEDYWFYMPSFEGLEKITTNLSNQLCTDSKPECDIEAELVILTDSRSIPDKELKA
VKDFVINLLKSIINKDNIIVGMAQFRNTLQEVFQLGAYQNLPELYSKITNMSLITGGSTL
IGHALKEVKTFFKTSKQRVARNVNQKLLIFTDGRSDDEFFQAANDLRDEGVEIHAVAVGN
VMDSKLLQITSLPSRKHKVDDYSDLKTLVNHVKKEICEETTEATCFVDIIIGFDISSQKP
GNNLFNNQQHLEIHLPDIVKYLTSLSSTSCSKGKKVQFSVTISVENTNEPFWTQFHHVHD
PNIITKLRNTVVNRPSHLNINFLDAIWNLVKNEIDIKNRNTVLLIFSDGLDDNIIALRQK
SEQLRIQGLDGLITVALEGAKYIDQLQHIEFGKGFGYNTQLFIDTENVAKRLFQYVDQIA
ERKCCCIFCRCEGEEGPRGERREKGHKLKGKDGDQLFGHSYQELQPFLFSELKNKIAPLM
ALSRELVREHDTEDCSMCPEDQYPSMEQDRCLNKTTSFLSFEEPLGISLASAAVFFSLMT
TSVLGIFLKRRDTPIVRANNRDLTYTLLIALLLCFISSLLFLGQPGRVTCLFRQPAFSII
FSLAVSCVLAKTVTVVVAFMATKPGSSMRKWVGKRLSLAIVLSCSLLQAGLCIIWLVTSP
PYPELNMNSLTETMILQCNEGSIFMFYCVLCYLGFLAIASFIVAFFARNLPDSFNEAKFI
TFSMLAFCSVWISFVPTYLSTRGKAMVAVEIFSILSSSAGLLGCIFFPKCFIILTYGSFP
MGEIDTSQSSSLYFMAPNEVPQYIGIIRLLQHFGWKWIGLFAADTESGEHFLQKLELLFF
QQGICLSFVQRFPKLLRLDDLGEFNDIMAEFYTHFTDVKTNAYIIYGESLTLAWLTALKS
VWEAANRGNAFLSKVWITTSQIDFTLTGTQREWNLQFYDGAIAFQIHSRENLEFEEFLRS
IKPHAGQRDGFRNHFWEQAFDCFFPDSRLSSLGSQECTGEEGLGSLPESLFQLQVNGHSY
SIYNGVYTVAHSLHSMLARRSNLRKVLADKVAESPELQPFKVTFLQQTFFLFSEEFCKE
NT seq
6120 nt
NT seq
+upstream
nt +downstream
nt
atgcttctgactttgttccttgttatccttgggacccaggcttctaaaacacagcaacct
gcctctgaatctgtagatgttgtccttctgattgacagctctaataccctcggcagacaa
ggttttctctcattaaaaaataatgtgaatagaatgatcagcaatcttccaatagggcca
aataaatatcgccttgcacttgttcaatacagtgatgatatccatgttgaattccagctg
gataacttcagaggaaaaaaccctatgctgaaccatattaaaaagatattttcattccgg
ggtggccctttaaggactgggaatgccctacaaaagatccacaagactatttttaaggca
ccaagaagagacagacaccaggttttgatcgttacaacttcaggagtatcacaagatgat
gtggaaggacctgccacattaatgagagaagatgggataaaaataattgctttaggaatg
ccgaatgcatctgagcaagacctacagtcaatggccacacatccattcagttaccatttt
gatacactaaaagatctgcaaaagttttcctcaaatatattgtctgtcattgaatcagct
gtaacaatagatgagagcttagtcatctccacaactaacccaccaagtacaacttttgct
catagcatacccataaaagttgcggattgttctgatgatttaattgcagatgttgtgttt
gtggtcgatgaagtcgtttcacctacaaatagtgaatatattgtatctttcttacaaaac
acagcaacctctcttgatgtgcagaaaagctgcgtcagaattggtctagtgacatacagc
aatgagcctcgtgtactttctcaacttaacacagaaacagagataaacaatcttgtattt
aagatcaagagcttttctcccagggaaggaaaagccaaattaggtgctgccttgaacttt
accagagaaataatttttactgaaagtgctggaagcagaaagacagaaggtgtggaacaa
atagctaccatcatcacccacagatcctctgaggatagtgtaactgaagcatcaagtctc
cttttgcagaagggtgtgacggtatttgccataagcattgaaggggctaatatcacacag
ttagggggagtagtatcctatcccccaaatagaaatattataaaagttgaccatttttca
aacctcacagataagtctaaaatttttaaggaaaaactgtttgagcacattcatttgttt
tttgcccaagccgaaagaacaaaagaattccgatcaggatgcatggaaacagaaaaggct
gatatttactttctcgttgatggttcatcaagcatcagcccctccgattttattaagatg
aagacattcctaaaggaagtaattaagatatttaccataggacgtaatcatgttcgattt
ggagttgttcagtttgcaactgtttataaaaaagaatttgaacttgatgagtatacaaaa
atcagccatgtagaaaaagccattaataatataatccaaaggggaggagatacgtatact
ggagctgctatacggtctatgcagctattatttgaaaaggcaaaaaaccagcgagagggc
aaagttccttcttatctcattgtactgacagatggaaaagcacatgataatgtgctggaa
ccttctaaaatgctaagaaaatcagctgtcaatatttatgctattggtgtgaaacctgct
aatattacacagttaaatgagattgcagactcaaaatcaaaggtttactatgcggaacag
tttgaatccttgaaaaatataaaaaataaaattgttcaagacatatgttctgaaaaagcc
tgtgagaaaatgaaagctgatgtcatgttcttagtggacagctctggaagtataagcgat
caggattttgagaagatgaagaagttcatgcaagaattggtagataagtgcagtgttggt
ctagatgaagtacaatttggtgttgttcagttcagtagcaccaataaagaagagttccaa
ctcaactcatcaaaagattacattattaatgctattgggaacatggctcaaatgcaacag
aacacttatactggaaacgctctgcaatttgtttctgattatttcaaaccagcaaaaaaa
gcacggccttctgtcaacaaaattcttatcctcctcacagatggggaagcacacgatgat
gtaagaaaaccagccagtgctctaagaaaagaaggtgtcattatctattccattgggatt
attggtgccaatggtacacaattactagagatcagtgggacagctaaaaatatgttttac
ttgacagattatgatagtctaaaatacatagagaaagacatcatgtttcacatatgcagt
ccatataaagcgtgccaaaggataacccgtttagatctggtttttgtaattgatagttct
agcagtattggtgaaactaactatgctctcataagtaacttcataattggcattgtaaat
aagtctgttgtaggtgaagaacatgttcagtttggagcagtaaagtattccgataatcca
gaaattatgttcaagctgaatacttacagtaaaagatcagatatcattaaatttattcag
gacaacaacacacttttagagggacgtacatatacagcaaaggctcttcagttctcaaaa
gatcttttaactaaagagaatggcagccgcatacaccatggtgtccctcaagttcttatg
gtcataactgatggagtatctcatgataaggcaattctgaatagcacttcaaatgaactc
agaaagaaaggaactattatttatgccattggaataaaagacgcaaatcctgaggaactt
gcaatcatggctggatcagaagactattggttctacatgccatcatttgagggactagaa
aaaataaccacgaacctgtcaaatcaattgtgcactgattcaaaaccagaatgtgatatt
gaagcagaacttgttatcctaactgattccagaagtatccctgacaaagaactgaaagct
gtgaaggattttgtgataaatttgcttaagtcaattataaataaagacaatattatagtt
gggatggcccaattcagaaatacacttcaagaagtattccagcttggtgcttatcaaaat
ctaccagaattatatagtaaaatcactaatatgtcactgattacagggggctccacattg
attggacatgccctcaaagaagtcaaaacctttttcaaaaccagcaaacaaagagtagct
cgaaatgttaaccaaaagttgctcatatttactgatggaagatcagatgatgagtttttt
caagcagcaaacgatctgagagatgaaggtgtggaaatccatgcagttgcagtaggaaat
gtgatggattcaaaacttctgcagattacgagtctcccaagcagaaaacataaggttgat
gattacagtgatctaaaaacacttgtaaatcatgtaaagaaggaaatttgtgaagagact
actgaagcaacatgttttgtagatattattattggatttgatatatcatctcagaagcca
ggaaacaatttattcaataaccaacaacatttggagattcatcttcctgatattgtaaaa
tacctaacatctttaagcagcacaagttgctctaagggtaaaaaagtacaattcagtgtg
actatttcagtagaaaatacaaatgaacctttctggacacaattccatcatgttcatgac
ccaaatataataacaaaacttagaaacactgtggtcaacagaccatctcatctcaacatc
aacttcttggatgctatttggaatttagttaaaaatgagattgacataaaaaatcgaaac
acggttttacttattttctcagatggcttggatgataatataatagcacttagacaaaaa
tctgaacagcttagaatacaaggactagatggactaataacagttgctttggaaggagcc
aaatatattgatcaacttcagcatattgaatttggaaagggatttggatataacactcaa
ttatttattgacacagaaaatgttgctaagaggctctttcagtatgtggaccaaattgct
gagcgaaaatgctgctgcatattttgtaggtgtgagggagaagaaggaccccgtggagaa
agacgagaaaaggggcacaagctgaaaggaaaggatggagaccaactctttggccactcc
taccaggaattgcagccattcctcttctcagaactgaaaaacaagattgcaccgctgatg
gcactatccagggaactggttcgggagcatgacacagaagattgttccatgtgtcctgaa
gatcagtatccaagcatggagcaagatcgatgtctcaacaaaacaacgagtttcctgtcc
ttcgaagaacctttagggatcagtctggcttcagctgctgttttcttttccctcatgaca
accagtgtgcttggaattttccttaagcgtagagatacccccatcgtcagggccaacaac
cgggacctcacttacacactccttatcgcccttttactctgcttcatctcttccttgtta
ttcctgggtcagccagggagagtaacctgtcttttccggcaaccagcattcagcatcatc
ttctcacttgctgtttcttgtgtattagctaaaactgttaccgtggttgtagctttcatg
gctactaagccaggttcttcaatgagaaaatgggtaggaaaaagattgtctcttgccatt
gtcctctcttgttctcttcttcaagcaggtctttgcattatatggctagtaacatctcct
ccataccctgagttaaacatgaattcccttacagaaaccatgattctgcaatgcaatgaa
ggttccatcttcatgttctattgtgtgctatgctacctgggctttttggccattgccagc
tttattgtggctttttttgcccgtaatttacctgacagttttaatgaagccaagttcatc
acttttagcatgttggccttctgcagtgtgtggatctcctttgttccaacttatctgagc
accagaggaaaagccatggtggctgtggagatcttctccatcttgtcctccagtgctggc
ttattgggatgtatctttttccccaaatgcttcatcatcctgacatatggatcatttcct
atgggagaaattgataccagtcaatcatcttcactttactttatggctccaaatgaagtt
cctcagtatatcgggataatccgattgcttcagcattttggatggaaatggattgggctc
tttgctgcggacactgagagtggagaacattttctgcagaaattggagcttttgtttttc
cagcagggaatctgtttatcttttgtacaaagatttccaaagttattgcgtttggatgac
ctgggtgaatttaatgatatcatggctgagttttatacacatttcacagatgttaaaacc
aacgcctacatcatctatggagaatctttgacgttagcctggttgacagctctcaaatct
gtatgggaagctgcaaatcggggaaatgcatttttaagcaaggtgtggatcaccaccagc
caaatcgattttacattaacaggaacccaaagggaatggaacctccagttttatgatggg
gccattgcctttcaaatccattccagggaaaatctggaattcgaggaatttctccggtcc
ataaaacctcatgcagggcaaagagatggatttcgaaaccatttttgggagcaagctttt
gactgtttctttcctgattcaagactgtcatcattgggaagccaagaatgcactggggaa
gaaggactgggaagccttccggaatctctgtttcaattacaggtaaacgggcacagctac
agcatctacaatggggtttatactgtggctcattctttgcacagcatgctagccagaaga
tccaatttgagaaaagttttggcagataaagtggctgaatctccagaactacaaccgttt
aaggtaacatttctccaacaaactttctttcttttcagtgaagaattttgtaaagaataa
DBGET
integrated database retrieval system
