Thamnophis sirtalis (common garter snake): 106547102
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Entry
106547102 CDS
T06107
Symbol
NLRC5
Name
(RefSeq) protein NLRC5
KO
K22615
NLR family CARD domain containing 5
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tsr04054
]
106547102 (NLRC5)
Pattern recognition receptors [BR:
tsr04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
106547102 (NLRC5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_NLRC3
LRR_CARMIL
LRR_TMOD-LMOD
LRR_6
LRR_MHP1-HER1-GIP3
HTH_NLRC5
Atypical_Card
NLRC4_HD2
LRR_4
LRR_SKP2
LRR_8
NB-ARC
LRR_NLRC4
AAA_16
AAA
NPHP3_N
WHD_NOD2
WHD_NACHT_C
AAA_14
DUF87
nSTAND3
RsgA_GTPase
IstB_IS21
Motif
Other DBs
NCBI-GeneID:
106547102
NCBI-ProteinID:
XP_013919627
UniProt:
A0A6I9XZ59
LinkDB
All DBs
Position
Unknown
AA seq
1181 aa
AA seq
DB search
MTMDGAQRQSIIRRIWPQLIDFLSDRSEWVLDKAERLLSQGELRLVHTEPDLKKKRLLVL
DMVLRDVDANPEVFRTFIQSVCMECSPPFELEITLLSISEEDAPESYSQCILRLMRRKYG
ISHSAEAAKTKDQFSSFSQRFVNLVIHQSKTSKLKVGKEKMKEEPMAAYESKDHDIPMMN
LSDLFKSAQMGITQVVLLLGKAGVGKSWLVHKICQQWAEEAFPQFKWIFFFEFKQLNLIK
RKLTLQELLFDYFLQPEQPEMVFQFLLKNAHQTLVILDSLDEFMDNIDLPPISFDHYSNL
LIPRSVSELVANLCHGKLLPGCTVLITSRPKQLPTLLVRSTVLSVEIWGFNHDKVAEYVS
CFFQQAFQKEQALALLNENGKLLSMCYIPVLCHIICICLEHLFLEDSESVQLPQTRTQFY
LRMLQTFLCKHQGGRTLNEVDMAQHQTILGDLCELAFKGLEEKKGVFDAGEVPEHVKDFS
CRFGLLLTSEMKMGKDSTQAGYTFAHFSLQEFLAALFLLTSPTVDGKMLKENFFLRTKWT
LKKETRMPFTENNYVFLSGLLSQECRQFLCSLAGRNEVRIQERQSIIRKILQKLAVANLT
GPRIVELSHCVYETQDICLAHHIATKLSFTFRNVKLMPFDMVTLAFLINGGSHGVCLDFD
GCFMELDYLDIWGSCEPIKSLSFKNRQYGSEFAGALSKTLPKIKLLTTFQLTGGNLKRPG
FEDLVRVLPNCHQLEIINLQDNRLEEQDMIKLAEIFPAMGKLKRMEKTGSLFMLEQKFPP
QVGKGAFAVHRTSHPLLPDAEGPTSFDALVHFPALQKLWLTNDRIPPTSIEYIAKILQRG
FAIEDINFSNSDLSLDNLSILLDSLEGKYHLKSINFGSLNLDNATILKLFSRLSTMPLLK
ILGLNNNHLDSRMCSHLAEVLKTTLQIEEIDLSHNKIDDAGMKAIAMALPGMKNVKLINF
SCNSITSAGGQWIVEGLIESERLEILKLSGNSIGNKTLGKLAPILPYKKHLKVLHLSRCQ
LGSEGLGHLAGILAKCPQMEEINLSENNIGDKGVMSLMTPWPQSSQLRKIDLKACHIRDC
ASKTLIVGLSCCPSLEEIGLSWNELGDETAKELAMVLPGMIRVKILDLDKNSITVYGASM
LARQLFRCPGIQTIRLWNNSIPRDLEQQLANQEPRLHFALL
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgacgatggatggtgcacaacgccaaagtatcatcagacgtatttggccacagctgata
gacttcctgagcgaccgttctgagtgggtgctggacaaagctgagaggcttctgtctcaa
ggcgaactgagattggttcacacggagcctgacctcaagaagaagcgtttactggtcctg
gatatggtcttaagagatgtggacgccaatcctgaggtcttcagaaccttcatccagagc
gtctgtatggaatgcagtcctcccttcgagttggagatcaccctgctaagcatctctgaa
gaagatgctcctgaaagttacagtcaatgcatcctccgcttgatgcgtagaaaatatgga
attagccactctgcggaagcagcaaaaacaaaagatcagttctcgtctttcagccaaagg
tttgtcaaccttgtcatccatcaaagcaaaacatctaagttgaaagtgggaaaagagaaa
atgaaagaggaaccaatggccgcctatgaatccaaggatcatgacatcccaatgatgaac
ttgtctgatcttttcaaaagtgcccagatgggcatcacccaggttgttctacttttgggc
aaggctggagtggggaaatcatggttagttcacaaaatctgtcagcagtgggctgaggaa
gcctttccccagttcaaatggatcttcttctttgagttcaagcagctgaacctcatcaag
aggaaactaactctccaagaactcttgtttgattatttcctccaaccagagcaaccagaa
atggtgtttcaatttctcctgaagaatgcccaccagaccttggtcattttggacagtctt
gatgagttcatggacaacattgacctcccacccatttccttcgaccactactcaaatctt
ctcatacctcgttctgtctctgaactggtggctaatctttgccatggaaaactcttgcca
ggttgcacagtgctgattaccagtcggccaaagcaactccctacattattagtcagaagt
accgtcctgtcagtagaaatttggggattcaaccatgacaaagttgcggaatatgttagc
tgttttttccaacaagcttttcagaaagagcaagcccttgctcttctcaatgaaaatggc
aaactcttgagcatgtgttacatccctgtgctgtgtcacattatttgcatctgcctggaa
catttgttccttgaagactcagaaagtgtccaactccctcaaaccaggacccagttttac
ctgagaatgctacagaccttcctctgcaaacatcagggtgggaggactttgaatgaagta
gacatggctcaacatcaaacaatccttggagatctgtgtgagttagccttcaagggtctt
gaagagaagaaaggggtttttgatgctggagaggtcccggaacatgtgaaagatttttct
tgtcgctttggtctccttttgacctctgaaatgaaaatgggcaaggactctacacaagca
ggttacacttttgctcattttagcttgcaagaattcttggcagcgctcttcctgttgaca
agcccaacagtagatggcaagatgttgaaggagaacttcttcctgaggacaaaatggaca
ctgaagaaagagacaaggatgccatttacagaaaacaactatgtcttcttgtctggcctt
ttatctcaagaatgtagacaattcctgtgttccttagctgggcgaaatgaggtcaggatt
caggaacggcaaagtattatcaggaagatattgcagaaactcgcagttgctaatttaaca
ggacccaggatagtagagttgagccactgtgtgtacgagacacaagacatttgcttagca
caccacattgcaacaaagctaagtttcacattcagaaacgtcaagttgatgcccttcgac
atggtgactttagcctttctaatcaatggaggttctcatggcgtgtgcttggattttgat
ggctgcttcatggagttggattacttggacatctggggcagttgtgaacctataaagagc
ttgagcttcaaaaacaggcaatatggaagtgagtttgcaggagccctttccaaaaccttg
cctaagatcaaactcctgacaacatttcagttaactggtggaaatcttaaaaggccagga
tttgaagatctcgttcgagttttgccaaactgtcaccagctggaaataataaatttgcag
gacaataggttggaggagcaggacatgatcaagttggcagaaatatttcccgccatggga
aagttaaagagaatggagaaaactggttccctctttatgctggaacagaaatttcctccc
caggtgggaaaaggagcgtttgcggtccacaggacatctcatccactgcttcctgatgct
gaaggaccaacttcatttgatgctttggtgcattttccagcactgcagaaactttggtta
accaatgacaggattcctcccaccagcattgaatacatagctaagatattgcaacggggc
tttgccattgaagatattaatttttccaatagtgatctcagcttggataatctcagtatt
cttctagatagtttggagggcaaataccacttaaagagtatcaattttggctctttgaac
ctcgacaacgccacaattctgaagttgttttcaaggctctctaccatgcctctcctgaaa
atacttggtttgaacaataatcatctcgacagtcgcatgtgttcccaccttgcagaagtt
ttgaagaccacacttcaaatagaagaaattgacttaagccacaacaagattgatgatgct
ggcatgaaagcgatagctatggcccttccaggaatgaagaatgtgaagctaatcaatttt
tcctgcaacagcatcacttcggctggaggacaatggattgtagaaggtctgattgagagc
gagaggctggaaatactcaaattatctgggaacagtattggaaataagactttgggaaaa
cttgctccaattttgccttacaagaagcatttgaaagtcctccacctctctcgttgtcag
ttgggttctgaaggactcggccacttggcgggaatcttggccaagtgtccacagatggaa
gaaatcaacttgtcagaaaacaacattggagataaaggtgtgatgtcccttatgacacca
tggccacaatcttcacaactgaggaagattgatctaaaggcctgtcatatcagagattgt
gcttccaaaacactaattgtcggactcagctgctgtccttcccttgaagagatcggcttg
tcttggaatgaactgggtgatgaaactgccaaagaactcgccatggttctccctgggatg
ataagggtgaagattctggatctggacaaaaactctatcacagtttacggtgcttccatg
ttagcgaggcagctttttcgatgtcctggaatccagacaatacggctatggaacaattca
atccccagggacctcgagcagcagctggccaatcaagagccacgattacatttcgccctc
ctttga
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integrated database retrieval system
