Thamnophis sirtalis (common garter snake): 106547146
Help
Entry
106547146 CDS
T06107
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106547146 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tsr03021
]
106547146 (PCF11)
03019 Messenger RNA biogenesis [BR:
tsr03019
]
106547146 (PCF11)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106547146 (PCF11)
Messenger RNA biogenesis [BR:
tsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106547146 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
CID
Pcf11_helical
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
VHS
Motif
Other DBs
NCBI-GeneID:
106547146
NCBI-ProteinID:
XP_013919678
UniProt:
A0A6I9Y5B9
LinkDB
All DBs
Position
Unknown
AA seq
1741 aa
AA seq
DB search
MSGGGGAATTASSSEGAAGGGGGGSSSTTTTGGGGNSDDACRDYQSSLEDLTFNSKPHIN
MLTILAEENVPFAKDIVSLIEAQIAKAPSNEKLPVMYLMDSIVKNVGREYLAAFTKNLVS
TFVNVFEKVDENTRKSLFKLRSTWDEIFPLKILYALDVRVNSVDPAWPVKPLPPNVNTSS
IHVNPKFLSKSPEEPAAPSSTVCSLPVSCSAVSSTPIVPEIQKNLTQEQLIRQQLLAKQK
QLLELQQKKLELELEQTKAQLAVSLSVQQSGSNLGQGPLKQHVPQPPHMPVKAPHPACLP
PEKNHLPPLQDAKIPNRDPRLNRTSQHSSHLKDQTHRKDFLMNAVSQPDPKTSKTPQSEK
QNATKPEKLKQNEKLQKKEFDQMDAKLKSPSPLQNKLLHPKETRNQECENPRVSEINKRD
PRLKKHLLEKPDGKDDDIKEKRRCLERKDKEEHRSVGGRNKVINGIVQKQDPNTEESEKQ
SGKPGRSSTRKRSRSPRSRSPSAHSPKRRERRSPKRRLRSLSPTGSKIGKPRQSGPKQSH
LEDFGSGARDDRSSNKRNIKQEVRDSRRPKKIHEDRPQEGMNQHSSKSNSEPKENLENWQ
GSKSSKRWKSGWEENKNPQLTEEHQGLGKSPHQRHRDTWATNKGVPSPRTPKQQHRLSVD
ANLQIPKELTLANKREILKKASERLTSGEITQDEFLVLCHKIRQLFQYQEGKHRCEWDNT
SGEKGISKKKPLLSESDLIYHEHKAKLKRTQVQHSFPRLNMMDAEEILDYHLPDGFLSGI
ECDQTKNKCSTQFGERSRRHSPVGGSRPYSDNSPHDVRRRHDEPSASKGLREEQRMNDIF
KRSRYEDTEKPFTDLSGSRFGVSDGKQRFSSLIEERAHFEGSPRHPGIRASGDGQPGHFE
GPANAAPRIEGPPAQTNLRFEGSLGQPSSLFEGPQGQSGGKNSHLFDGPPAQLGSGPLRF
DGPSGQVSTGSAIRFEGPIGQPGGGLRFEGPSGQPVGGMRFEGTHGQPSSGMRFEGPHSH
ATAGIRFEGPHSQSSAGMRFEGMHDQPSNNIRFDGQPSGGLRFEGPHGQPSNAIRFEGPH
DRSVGPHGPPGSGMRFEGPHGQPVGPHGQQGSGLRLEAPHMQPVGSLGQPGSNMPFDGPH
GQPIGPHGQPASGLRFEGPHGQPVGPHGQPLGSRFEGPHNQPLGPHGQLGISPRFETPSV
QTGGGLRFEGPINQTRFDGCPSRFDGQPGQPSILQRLDGLHVQPGSRFEIGPAQTPPRFD
GPPGQQVQPRFDTMLQRFDEPQHPATRYDLLLGHQGPRIENVANHPGSRLEAAPYGQTGP
YNEAPNQPPYNGASQGLQFQRPDQIFDNPQGPNFSGPPVSAAQHFPNAINRAPGPFYDDK
NLQGPQFRNFNNLAVGNVQPPQQVPVMPVSSGQPFNQGQPLLPVHGQNPGGFVQNQPGNI
PLSYPDNHLGQLDVNELFSKLLSTGILKSLQPDSSSSQVSEVSTQPPPEEEEDDQDQNED
IPDLTNFGIEELKQRYDSIINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKD
VSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPA
GPAGVDESCEICQEQFEQYWDEEEEEWHLKNAIRVEEKIYHPSCYEDYQKTSSFDSTPSP
SKTPVENPLNIMLNIVKQEGQDSCNSPKVKEEPEEKATDCTEGNIPESAEIKTEPLKVES
V
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcggcgccgccacgacggcgtcgtcgtccgaaggggccgctggcggt
ggcggcggcggcagcagctccaccaccaccaccggtggtggcggcaacagcgacgacgcc
tgccgcgactaccagtcgtcgctggaagacctgacgttcaacagcaagccgcacatcaac
atgctgaccatcctggccgaggagaacgtgcccttcgccaaggacatcgtctcgctgatc
gaggcgcaaatcgccaaggctccttctaatgagaaacttcctgttatgtacctaatggac
tccattgtcaagaatgttggacgagaatatcttgctgcatttactaaaaacctagtttca
acatttgttaatgtgtttgaaaaggtggatgaaaatactaggaaaagtttatttaaattg
cgttccacgtgggatgaaattttccctctgaagattctctatgctctcgatgttcgggtg
aattcagttgaccctgcttggcctgttaagccgttaccccctaatgtgaatacttctagc
atccacgtgaatcctaagtttttaagtaaatcgcctgaggaacctgcggcacctagctct
actgtctgttctcttcctgtgtcctgttctgctgtgtcctccactccaattgttcctgaa
atacaaaagaatttaacgcaagagcagctgataagacaacagctgctggcaaaacaaaaa
cagttgttagaacttcaacagaagaaattggaacttgaattagaacagacaaaagcacag
ctggctgtttccctcagtgttcagcaaagtggatctaatctgggccaaggacctttaaaa
caacatgtgccgcagccacctcacatgccggttaaagctccccatccagcttgtctgcca
ccggagaaaaaccatttgcccccactccaggatgccaaaatacccaatagagatcctcgt
cttaacagaacgagtcagcactcgtctcatttgaaagatcagactcataggaaggacttc
ctgatgaatgcagtcagccagcctgacccgaagactagcaaaactccacaaagtgaaaag
caaaatgccacaaagccggaaaaattaaaacagaacgagaaattgcagaagaaagagttt
gatcaaatggatgcaaagttgaaatcaccctctccgttgcaaaacaagctgcttcaccct
aaagaaaccaggaaccaagaatgtgagaatcccagagtgtctgaaatcaacaagagagac
cccaggttaaaaaagcatctcctggagaaaccagatggcaaagatgatgacatcaaagag
aaaagaagatgcctggagaggaaagacaaagaggagcatcgatccgttgggggtagaaat
aaagtaattaatggcattgtacaaaagcaagatcccaatacagaagagtcagagaaacag
agtggaaaaccaggacggtcaagcactaggaagaggtcacgttctcccagatctcgatca
ccgtctgcacattctccgaaacgaagagaaagaaggtcccctaaaagaaggctcaggagc
ctctctccaactggatctaagatcgggaaaccacgacaatctgggcccaaacagtcccat
ctagaggactttgggtcaggggcacgggatgacagaagctcgaacaagaggaatatcaag
caggaagtgagagattcccggaggccgaagaaaatccacgaagaccgaccgcaagaagga
atgaaccaacattcttccaagtcaaattcagaacccaaagaaaacctggagaattggcaa
ggttccaaatcgagcaaaaggtggaaatctggctgggaggaaaataaaaaccctcaactt
accgaagagcaccaaggacttggtaaatctcctcatcagaggcacagggatacttgggca
actaataaaggagttccttcaccccgcaccccgaaacagcaacatcgattaagcgtagat
gctaatttgcaaatacccaaagaactgaccttggccaacaagagagagatacttaaaaag
gcaagtgaacgtctcacatctggggaaataacacaggacgaattcctcgtcctgtgccat
aagattcgccaacttttccagtatcaggaagggaagcatagatgcgagtgggataataca
tcaggcgaaaaggggatttccaaaaagaagcctttgttatctgaatcggatttgatatac
catgaacacaaagctaagctaaaacgaacgcaagttcaacattcgtttccaagactcaat
atgatggatgctgaagaaatattagactatcacttacctgacggatttctttctggaata
gaatgtgaccaaacaaagaacaaatgcagcactcagtttggcgaaagatcaagacgacat
tctcctgttggtgggagcagaccctactctgataactctccacatgatgtcaggagaaga
cacgatgagccaagtgcctcgaaaggtcttcgggaagagcagaggatgaatgacattttc
aagcgatcgagatacgaagatacagagaagccgttcaccgacctttcaggatcacgattt
ggggtctctgatgggaagcagagattcagttcattgattgaggagagagctcattttgaa
ggttctcctagacatcctggcatcagggccagtggagatggacaaccgggtcattttgaa
gggccagctaatgcagctcctcgaattgaagggccaccagcacagaccaatttaaggttt
gaaggatctctaggtcagccgtcttctctgtttgaagggccccaaggacagtctggagga
aaaaattctcacctgtttgatgggccaccagcacagcttgggagtggtcccttaaggttt
gatggaccctcggggcaagttagtacaggaagtgctatacggtttgagggtccaatagga
caaccagggggaggtttacgatttgaggggccttcaggccaacctgtgggtggaatgaga
tttgaagggacccatggccagccctcgagtggaatgaggttcgagggacctcacagtcat
gcaacggctggtattcggttcgaggggcctcacagccagtcttctgctggaatgaggttt
gaaggcatgcatgatcagccatcaaataatatcagatttgatggccagccttcgggtgga
ttgaggttcgaagggcctcacggccaaccttcaaatgccataagatttgaaggaccccat
gaccggtcagtaggacctcatggtccaccaggtagtggaatgagatttgaggggccacat
ggacagcctgtagggcctcatggccaacaaggatctggcctaagattagaagccccacat
atgcaaccggtggggtccctgggacaaccaggaagtaatatgccatttgacgggccacat
gggcagcccattggtccacatgggcagcctgcgagtggtctgagatttgagggccctcat
gggcaacctgtagggccacacggtcaaccccttggctctaggtttgaggggcctcacaat
cagcctctggggccacatggacagctgggaatttctcccaggtttgagacaccgtccgtt
cagactggaggtggacttagatttgaagggcctattaaccagacaaggtttgatggctgt
ccgtcaagatttgatggtcagcctggccagccatcaattttacaaagactggacggattg
cacgtacaacctggttcaaggtttgaaattggccctgctcagacgccacctcgattcgat
ggcccacctggccagcaggtccaacctcggtttgacacaatgcttcagcggtttgacgag
cctcaacacccagccacacgatatgacctcctcctcggacaccaaggcccaagaattgaa
aacgtagctaaccatcctggctcaagattagaggcagcaccctatggacaaaccggccct
tataatgaagctcccaaccagccaccttataatggggcttcacaaggactgcagttccag
agacctgaccaaatatttgataacccccaaggaccaaacttcagtggcccacctgtttct
gcagcacagcactttcctaatgcaattaacagggccccaggacctttttatgatgacaag
aatcttcagggccctcagttcagaaattttaataatttggcagttggaaacgttcagcca
ccacagcaggttcctgttatgccagtatcttctggccagcctttcaatcaagggcagcca
ctattgccagtccatggacaaaaccctggaggttttgttcaaaatcagccaggaaacatc
ccactttcctaccctgataatcaccttggacaacttgatgtgaatgagttattttcaaaa
ctactctctacaggaatccttaaatctttacagcccgattcatcttcatcacaagtcagt
gaagtttcaactcaaccacctccagaggaagaagaggatgatcaagatcagaatgaggat
attccagacctaactaattttgggatagaagaactaaaacaacgttacgatagcattata
aacaggctctacaccggcattcagtgttactcttgcggaatgaggtttacaacttcccag
acagatgtgtatgcagaccatttggattggcactatcgccagaaccgtacagaaaaggat
gttagcaggaaaatcactcatagaagatggtactacagcttaactgattggatcgagttt
gaagaaatagccgatttagaggagcgtgcaaagagccagttctttgaaaaagtacatgaa
gaagttgtattaaaaactcaagaagctgctaaggagaaggagtttcagagtgtccctgca
ggcccagctggagtggatgagagctgtgaaatctgccaggagcagttcgaacaatattgg
gatgaggaagaggaggaatggcacttaaaaaatgcaattcgtgtagaagaaaagatctac
catccatcgtgttacgaagattatcaaaagacttcatcatttgattccaccccatctcca
agcaagactcctgtggagaacccactaaatattatgttgaatattgtcaaacaagaggga
caggactcctgtaacagccccaaagtcaaagaagaaccagaagaaaaagctacggattgc
acggaggggaatatacctgaatctgctgaaattaaaacagagcctctaaaggttgaatcg
gtttaa
DBGET
integrated database retrieval system
