Thamnophis sirtalis (common garter snake): 106547240
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Entry
106547240 CDS
T06107
Symbol
PCDH18
Name
(RefSeq) protocadherin-18
KO
K16499
protocadherin delta 2
Organism
tsr
Thamnophis sirtalis (common garter snake)
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tsr04515
]
106547240 (PCDH18)
Cell adhesion molecules [BR:
tsr04515
]
Cadherins
Protocadherins
106547240 (PCDH18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Syndecan
DUF3481
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
106547240
NCBI-ProteinID:
XP_013919807
UniProt:
A0A6I9XZI8
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MPCLGRKMHFPFFFVLATVMSCWEGAAAKNLKYRIYEEQRVGSVIARLSEDVADVLYRLP
NPSSVRFRAMQRGNSPLLLVREDNGEISIGAKIDREQLCQKNLNCSIEFDVITLPTEHLQ
LFHVEVEVLDINDNSPQFSRALIPLEISESAAVGTRIPLDSAFDPDVGENSLYTYSLSAN
DFFTVEVRTRTDGAKYAELIVVRELDRELKSSYELQLTASDNGVPQRSGSSLLKISISDS
NDNSPVFEQQTYIIQLLENSHVGTLLIDLNATDPDEGANGKVVYSFSSHVNPKIIETFKM
DSESGQLTLLKPVDYETTKSYEIDAQAQDLGPNSIPAHCKIIIKVVDVNDNKPEINLNLM
SLGKEEIAYISEKASTETFVALVRVQDKDSGLNGEVVCKLHGHGHFKLQKTYENNYFILT
NTTLDREKRSEYSLTVIAEDKGTPSLSTVKHFTVQIIDENDNPPQFQTNRYEIVILENNS
PGAYITSVTATDPDLGDNGQVTYTILETLSILGSSITTYVTIDPSNGAIYALRTFDHEEV
NQIVFMVQARDGGSQQLASNTTVVLTIIDENDNAPLIVGPALHNNTAEISIPKEADSNYC
ITRIRAIDRDSGVNAEISCSLATSSEEGLFVMDPQTCDICFNASIESVISTEWELTVVVR
DKGSPQLSTKALLKCSVVKNIYQLSSTEATYPSQPPLDISMITIISLGAICAVLLVVMVV
FATMCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHKASP
SSSPTLERGQMSSRQSHHSHQSLNSLVTISSNHVPENFSLELSHATPAVEVSQLLSMLHQ
GQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEG
FSDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFQPQQSQ
PPQEEEDHQEVESSEKKKSFSTFGKDNQNIEEAADICTSSLLSEMNSVFQRLLPPSLDAY
TECNEIEPPSSLERRKGHLPAKAVSYPQGVAAWAASTHFQNPASSTGLTMGTHSGAQPTS
KWLPAMEEIPENYEEDEFDNVLNHLSDGKHELMDASELVAEINKLLHDVRQN
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgccgtgtttgggtcgaaaaatgcactttccttttttctttgtactggcgaccgtcatg
tcctgctgggaaggcgcagcggccaaaaatctgaaatacaggatctacgaggagcagagg
gttggctcggtcattgccaggctttccgaagatgtcgccgacgttttgtataggttgccc
aatccttcatctgtgcggttccgagccatgcagagggggaattctcccttgttgctggtt
cgggaggacaacggagagatcagcattggggctaaaattgaccgggagcaactctgccag
aagaacttaaactgttccatagagtttgacgtgatcactctgccgactgaacatctgcag
cttttccatgtcgaggtcgaagtgttggatattaatgacaattcgcctcaattctccaga
gctcttattcctcttgaaatctcggagagtgccgccgtaggtacgcggattcctttggat
agtgcttttgatccagatgttggggaaaattccctctacacatactcactttcggccaac
gatttctttaccgttgaagttagaacaaggacagatggagccaaatatgcagaattgatt
gtggtgcgggaactggaccgggagctgaaatcaagctatgaactccaactgactgcctct
gataatggtgtgcctcagagaagtggatcatctctcttgaaaatcagcatttcggattct
aatgacaatagtcccgtttttgaacaacagacatacattattcaacttttagaaaattca
catgttggcacgttacttattgacctcaatgccactgatccagatgaaggtgctaatggc
aaggttgtctactctttcagtagtcacgtgaaccccaaaattatagagacttttaaaatg
gactctgaaagtggtcaactaactcttctcaaaccagtggattatgagaccaccaaatcc
tatgaaattgatgctcaggcacaagatttgggtccaaattcaattccagctcactgtaaa
atcattattaaggttgtagatgtgaatgacaacaaacctgaaatcaatttaaacctgatg
tctctaggaaaagaagaaattgcctatatttctgaaaaagcatccacagagacttttgtg
gcccttgttagggtgcaagataaagattctggactgaatggagaagtggtttgcaagctt
catggacatgggcacttcaaacttcagaagacctatgagaataattatttcatattaaca
aatactactttggatcgagaaaagcgatctgagtatagcctgacagtcatagcagaagac
aaaggaactccaagtctttctacagtgaaacattttactgtccagatcattgacgaaaat
gacaacccaccccaatttcagacaaacagatatgaaattgtaatcttggaaaataattct
cctggtgcatatatcacctctgttacagcaactgatccagatctgggagataatgggcag
gtgacctacactatcttggagacgctatctattttgggaagttccataactacatatgtg
accattgatccctctaacggagccatctatgcacttaggacttttgatcatgaggaagta
aaccagatagtctttatggttcaagctagagatggagggagtcaacagttggctagcaat
acaacagtggtactaactattattgatgaaaatgataatgctcctttgattgtggggcct
gcactgcacaacaatacagcagagatttcaatccctaaggaagctgacagtaactattgc
atcactaggataagagccatagatagagactcaggggttaatgcagagataagctgctca
ttagcaactagtagtgaagaaggactctttgtgatggatccacagacatgtgacatttgt
tttaatgctagtattgaatctgttatatcaacagaatgggaacttacagtggttgttagg
gacaaaggaagccctcaactgagtaccaaagcacttctgaaatgcagtgttgttaaaaat
atttatcaactttcatctacagaagcaacatatccaagccaacctcctctagatatttcc
atgatcacaataatatccttaggagcaatatgtgcagttttgttggtggtcatggtcgtc
tttgctacaatgtgtaatcgtgagaagaaagacacccggtcttataactgtcgtgttgca
gaatccacataccagcatcatcccaaaaggccatcaagacaaattcacaaaggggacatt
acattagtgcctaccattaatggtactttaccaatcagatcccatcacaaagcttcacct
tcatcatctccaaccctggaaagagggcaaatgagcagtcgacaaagccatcacagtcat
cagtctttaaatagtctggtgaccatctcatcaaatcatgtacctgagaatttctctctt
gagctcagtcatgctactcctgctgttgaggtgtctcagcttctctccatgcttcatcaa
ggccaatatcagccaaggccaagttttcgaggcaacaagtattccagaagctacaggtat
gcccttcaagatatggataagttcagcctgaaagatagtggccgtggtgacagtgaagca
ggagacagtgattatgatttaggaagagattctcctattgaccgacttcttggagaagga
ttcagtgacctttttcttacagatgggagaattcctgcagcaatgagattatgcacagag
gaatgcagagtcctggggcattctgaccagtgctggatgccacccctgccttccccatct
tctgattatagaagcaatatgtttataccaggagaagaatttcagcctcagcaaagccag
ccaccacaggaggaggaggatcatcaggaggttgaatcatctgaaaagaaaaagagcttt
tcaacttttggcaaagacaatcagaatatagaagaagcagctgacatatgtacctcatct
ctactctctgaaatgaacagcgtcttccaacgtctcttgcctccttcgttggatgcttac
acagagtgtaatgaaatagagcctcccagctcactagagcgcaggaaaggacatttgcca
gccaaggctgtaagctatccacaaggggtcgcagcctgggcagccagtactcattttcaa
aaccctgcaagtagcactgggcttactatgggaactcattcaggtgcccagcccacttca
aaatggctacctgccatggaggaaattccagagaactatgaagaagatgagtttgacaat
gtacttaaccacctcagtgatggtaaacatgaactcatggatgctagtgaactggtggca
gaaattaacaagctgctacatgatgtccggcaaaactag
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integrated database retrieval system
